LOCUS       XM_006245404            3011 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus melanophilin (Mlph), transcript
            variant X3, mRNA.
ACCESSION   XM_006245404
VERSION     XM_006245404.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006245404.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006245404.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3011
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3011
                     /gene="Mlph"
                     /note="melanophilin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 9 ESTs, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 45 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:316620"
                     /db_xref="RGD:1310733"
     CDS             296..2065
                     /gene="Mlph"
                     /codon_start=1
                     /product="melanophilin isoform X3"
                     /protein_id="XP_006245466.1"
                     /db_xref="GeneID:316620"
                     /db_xref="RGD:1310733"
                     /translation="MGRKLDLSKLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQ
                     KESSKRELLSDTAHLNETHCARCLQPYRLLVNSRRQCLECGLFVCKSCSHVHPEEQGW
                     LCDPCHLARVLKIGSLEWYYQHVRARFKRFGSAKVIRSLCGRLQGGGGSEPSLEEGNG
                     DSEQTDEDGELDTKAKDQSLNSKKKKRLLSFRDVDFEEDSDHSIQPCSHTLGLSSVPE
                     SAQSLQSLSGEPYSEDTTSLEPEGMEETGAGASGCYPSPEEQPYSPLPSGEDAHTELH
                     SPATSCKSTFGTTAMPGIDDNKGKQLPSQYLADVDTSDEDSIPGPRAASQHTKRRART
                     VPETQISELNKRMSAVEHLLVHLENVVLPPSDQEPAVETHPSADTEEETLRRRLEELT
                     SNVSGSEISSEDETKPDAPFRGVSPKVCTDTGHMEAQERSPRSPGNPAQPTKSTDEEL
                     SEMEDRVAMTASEVQQAESEVSDIESRIAALRAAGLTVKPSGKPRRRSGIPIFLPRIT
                     EKLDRIPKTPPADPENQAKVPKATAVPCLMRRKYSPSSQGIDGGSFDRKSVYRGSLTQ
                     RNPNGRKGTARHIFAKPVMAQQP"
ORIGIN      
        1 ccgctcttgg cctgtccagg caccctgggg tgcacggtga acccggagct gggcgggaca
       61 ggagtagccc acgtgatctg agccgcaagc tgggcaggac tggtgccaca gctgactgga
      121 tccctgcact cagctctgtc tagctcagtg ctccctgact ggacactggc ctcagtgcct
      181 ggggtttctc tctcacgacc taagagaaag gagcagaggc caggactcac agagccagag
      241 ccagaggctg agcaatccca ggagagaggc tgggtggcct ggaggaggcg cagagatggg
      301 gagaaagctg gacctttcca agctcacaga cgaggaggcc gaacatgttt gggcagtggt
      361 tcagcgggac ttcgacctca ggaggcgaga agaagaaaga ctccaggggc tgaagggcaa
      421 gatccaaaag gagagctcca agagggagtt gctgtcggac acagcccatt tgaatgagac
      481 ccactgtgcc cgctgcctgc agccttaccg gctactcgtg aacagcagac ggcagtgtct
      541 agaatgtggt ctcttcgtct gcaaaagctg cagccacgtc cacccagaag agcagggctg
      601 gctctgcgac ccctgccact tggccagagt cttgaagatt ggctccctgg aatggtacta
      661 ccagcacgtg agagctcgct tcaagcgttt tgggagtgcc aaagtgatcc ggtctctctg
      721 cgggcggctg cagggtggag gtggatctga gccaagcttg gaagaaggaa atggagacag
      781 tgagcagaca gatgaggatg gagagctgga cacaaaggcc aaagaccagt ccctcaacag
      841 caaaaagaaa aaacgcctgc tctccttccg ggacgtggac tttgaagaag actcagacca
      901 ctcgatacag ccttgcagcc acaccctggg cctgtcctca gtccctgagt ctgcccagag
      961 cctgcagtcc ctctcaggtg agccctactc tgaggacacc acctctctgg agcccgaggg
     1021 catggaggag actggtgcag gggcttcagg gtgttacccc agtcctgagg agcagccata
     1081 cagcccttta ccctctggag aggatgctca cactgaactg cactcgcctg caacatcctg
     1141 caagagtacc tttgggacca cagctatgcc tgggatagat gataacaagg gcaaacagct
     1201 gccctcacag tacctggctg atgtggacac ctctgatgaa gacagcatcc cgggccccag
     1261 ggcagcctcc cagcacacca agcggagggc acggactgtg cctgagactc agatctcgga
     1321 gttgaacaag cgaatgtcag ctgtggagca tctgctggtc cacctggaaa atgtggttct
     1381 gcctccctca gaccaggaac cagctgtgga gacacacccc agtgctgaca cagaggagga
     1441 gacactcagg aggaggctgg aggagctgac cagtaacgtc agtggttctg aaatctcatc
     1501 agaagatgag accaagccag atgccccctt ccgtggagtg tccccaaagg tgtgcacaga
     1561 cacagggcac atggaggcac aggaaaggag ccctcggagc cccgggaacc ctgctcaacc
     1621 tacaaaaagc acggatgagg agctctctga gatggaggat agagtggcca tgacagcctc
     1681 ggaagttcag caagctgaaa gtgaggtctc agacattgag tccagaattg cagctctgag
     1741 ggcagcagga ctcacagtga agccctcggg aaagcctcgg agaaggtcag gcatcccgat
     1801 ctttcttccc cggattactg agaaacttga caggatccca aagactccac ctgcagaccc
     1861 tgagaaccaa gccaaggtgc ccaaggcgac ggctgtgccc tgtctcatga ggaggaagta
     1921 ttctcccagc agccaaggca ttgacggtgg ttcttttgat cggaaatcag tgtaccgtgg
     1981 ctcgctgaca cagaggaacc ctaatgggag gaaagggaca gccagacaca tcttcgcgaa
     2041 acccgtgatg gcccagcagc cctgaaggag aggctcatgg cacaggacag tactacaagc
     2101 gccccacagt ttcctccacg tgaccgtcat agccccctgg gctctgagcc tcttgatgct
     2161 cagacctgct tgtagtcatc atcccagtga gaagtaagaa ctcagactgt ggatctcaag
     2221 cctccagctg tcaccaggtc accagcccaa gccagggaac ctgccagcct ctgacccagg
     2281 aaatacaaac tatgtgactt cccctcagtt gatgttctct gcctgctgaa ggactctcag
     2341 attccctctc actgtgattc tctaacccca tcatcagcct tgcctagcca cgctcacagc
     2401 tgggatggga agagctggtt caggggaggt cctgaaggtg cacacactcc cgagtgggca
     2461 ggggagcggg aggcagaatc gagagtgtct gtgggcatga tgggacagtg tgcagttcag
     2521 gtggtgaatg aggagggatg gattcctccc ccaccccaca gatcttgttc ttcaaatgtc
     2581 cttgtgtgtt acagatggga gcaaataaca ctgtccccca ccccagcatt cccatcacaa
     2641 tgaccaccac attgagacca agcctccaat acaggctttt ggtgtacact acatagggag
     2701 cttgctttct agatagctcg tgcttcaaat gcaggtgtct aacacacaca gatgactgct
     2761 ctaggattta tcaagaactc agatcttcca gagtcaagtg tgtcagggcc agttttgctg
     2821 gtgtctgcac ggtctgcctt cacagccacc ccaccgctac aggagggctg tttcccacac
     2881 ccagggctgc ctctttcctg tcagcttgta tcctgctctg ggagtctaga gaacacacgg
     2941 gtcagagcca catatatcct agtgtcttct gagaataaac tccaggaaga agtctctcat
     3001 tcattcatgt a
//
