LOCUS       XM_039087724            3918 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MLLT6, PHD finger containing (Mllt6),
            transcript variant X1, mRNA.
ACCESSION   XM_039087724
VERSION     XM_039087724.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087724.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3918
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3918
                     /gene="Mllt6"
                     /note="MLLT6, PHD finger containing; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 19
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 181
                     samples with support for all annotated introns"
                     /db_xref="GeneID:303504"
                     /db_xref="RGD:1306689"
     CDS             418..3753
                     /gene="Mllt6"
                     /codon_start=1
                     /product="protein AF-17 isoform X1"
                     /protein_id="XP_038943652.1"
                     /db_xref="GeneID:303504"
                     /db_xref="RGD:1306689"
                     /translation="MKEMVGGCCVCSDERGWAENPLVYCDGHACSVAVHQACYGIVQV
                     PTGPWFCRKCESQERAARVRCELCPHKDGALKRTDNGGWAHVVCALYIPEVQFANVLT
                     MEPIVLQYVPHDRFNKTCYICEEQGRESKAASGACMTCNRHGCRQAFHVTCAQMAGLL
                     CEEEVLEVDNVKYCGYCKYHFSKMKTSRHSSGGGGGAGGGGSGGSGSGTSGGGGGTGG
                     GGSSNSFLSGRRSRSASPSTQQEKHPTHHEKGQKKSRKDKERLKQKHKKRPESPPSIL
                     APPVVPTADKVSATTSSHHEASTQETSESSRDSKGRKSSSHSLSHKGKKLGSGKGVSS
                     FTSASSSSSSSSSSSSSGGPFQPAGSSLQSSPDFAAFPKLEQPEDDKYSKPPAPTPPA
                     PPSPTIPEPPKADLFEQKVVFSGFGPIMRFTTTTSSSSRARAPSPGDYKSPHVSGSGT
                     SAGSHKRMPALSATLGPAEEAPETTLKEKKHKASKRSRHGPGRPKGSRGKEGATGPTA
                     SLPAAQLAGFTATAASPFSGGSLVSSGLGGLAPRTFGPSGSLPSLSLESPLLGAGIYT
                     SNKDPISHGGGMLRAVCSTPLSSSLLGPTGTSALPRLSRSPFTSTLPSSSASISTTQV
                     FSLAGSTFSLPASHIFGTPMGTVNPLLTQAESSHTEPDLEDCSFRCHGTSPQESLSSM
                     SPISSLPALFDQTSAPCGGGQLDSTAPGTTNMEQLLEKQGDGEAGVNIVEMLKALHAL
                     QKENQRLQEQILSLTAKKERLQILNVQLSVPFPALPAALPAANGPVPGPYGLLPQAGS
                     SDSLSISKSPPGKNCLGLDNTLSTSSEDPHSGCPSRSSSSLSFHSTPPPLPLLQQSPA
                     TLPLALPGAPAPLPPQPQNGLGRAPGAAGLGAMPMAEGLLGGLAGSGSLPLNGLLGGL
                     NGAAAPNPAGLSQAGGAPTLQLPGCLNSLTEQQRHLLQQQEQQLQQLQQLLASPQLTP
                     EHQTVVYQMIQQIQQKRELQRLQMAGGSQLPMASLLAGSSTPLLSAGTPGLLPTASAP
                     PLLPAGALVAPSLGSNTSLMAAAAAAAAVAAAGGPPVLTAQTNPFLSLPGADASGNGS
                     KGGVSTGPGPPIYSYGTSRGGWL"
ORIGIN      
        1 gccgggcagg ggggccgggg gggcggcgcg tgagcgggcg gcgcggggcg ggcgggcgcc
       61 cgcgatgtgc cactcggcgc ctcccccgcc gggccctggt tgcaccgcgg ccgggcggcc
      121 ctggtagccg acgagcggcg cggaagggga gcgcagcgcg cgagtctcat tgttgggggg
      181 gggggcccgt cggggcatga gggcgagagc acggcggggg gggcggccag acagagcgag
      241 cgaggaggag gaggaggacg ccgaggagga ggaaggagga ggcaaagaaa agaagcggcg
      301 acggcggcgg aggagggggc gaggaggcgc gcggcccccg ctccctccct ccccccctga
      361 cccccgaccc ccaccggccg gcccccagcc ccagccccgg agggagctca tgggagtatg
      421 aaggagatgg taggaggctg ctgcgtatgt tcggacgaga ggggctgggc cgaaaacccg
      481 ctggtctact gcgatgggca cgcgtgcagc gtggccgtcc accaagcttg ctatggcatc
      541 gtccaggtgc caacaggacc ctggttctgc aggaaatgtg aatctcagga gcgcgcagcc
      601 agggtgaggt gtgagctgtg cccacacaaa gatggggcat tgaagaggac tgacaatgga
      661 ggctgggccc atgtggtgtg cgccctgtac atcccggagg tgcagttcgc caacgtgctc
      721 accatggagc ccattgttct gcagtacgtg cctcacgatc gcttcaacaa gacctgttac
      781 atctgtgagg aacagggccg ggaaagcaag gccgcgtcag gagcctgcat gacctgtaac
      841 cgtcatggat gccgacaagc tttccatgtc acctgtgccc agatggcagg cctgctgtgt
      901 gaggaggaag tgctggaggt ggacaacgtc aagtactgcg gctactgcaa ataccacttc
      961 agcaagatga agacatcccg gcactccagc gggggaggag ggggagcagg aggaggcggc
     1021 agcggaggca gcggcagcgg caccagcggt ggtggaggtg gcacaggggg aggcggcagc
     1081 agcaatagct tccttagcgg caggagaagc cggtcagcct caccgtccac ccagcaagag
     1141 aagcacccta cccaccatga gaagggccag aagaagagtc gaaaggacaa agaacgcctt
     1201 aaacagaagc acaagaagcg gcctgagtct ccccccagca tcctcgcccc gcctgtggtt
     1261 cccactgctg ataaggtctc agctacgact tcctcccacc atgaggccag cactcaggag
     1321 acctctgaga gcagcaggga ctcaaagggg agaaagtctt ccagccatag cctgagtcat
     1381 aagggcaaga aactgggcag tgggaaaggt gtgagcagtt ttacctccgc ctcctcctcc
     1441 tcctcctctt cctcctcttc ttcctcctct gggggcccct ttcagcctgc aggttcatct
     1501 ctgcagagct ctcctgactt tgcagccttc cccaagctgg agcagccaga ggacgacaag
     1561 tactccaagc ctccagctcc cactccgcca gcccctccgt cgcccaccat ccctgagccc
     1621 ccgaaggctg acctcttcga acagaaagtg gtcttctctg gctttgggcc catcatgcgc
     1681 ttcaccacca ccacctccag ctccagccgg gcccgagccc cctcccctgg agactataag
     1741 tctccccatg tttcagggtc cgggacctca gcaggctccc ataaacggat gcctgcactg
     1801 agtgccacgc ttggacctgc tgaggaggcc cccgagacga ctctgaagga gaagaaacac
     1861 aaagccagca agaggagccg acatgggcca ggccgaccca agggtagccg aggcaaggag
     1921 ggcgctacag gcccgaccgc ctccctccct gccgctcagt tggctggctt tactgccact
     1981 gcggcctcac ccttctctgg gggttctctg gtcagctccg gcctgggtgg cctggctccc
     2041 cgtacctttg ggccttcagg aagcttgccc agtttgagcc tggagtcccc cctgctgggg
     2101 gcaggcatct ataccagtaa taaggacccc atctctcatg gtggagggat gctgcgggct
     2161 gtgtgcagca ccccactctc ttccagcctg ttggggccca cagggacctc agccttgccc
     2221 cgcctcagcc ggtccccgtt caccagcacc ctcccatcct cctctgcttc catctccacc
     2281 actcaggtgt tttctctggc tggctcaacc ttcagcctcc ctgcatccca catctttgga
     2341 acccctatgg gcactgttaa ccccctcctc acccaagcgg agagcagcca cacagagcca
     2401 gacctagaag actgcagctt ccggtgtcat gggacctccc cccaggagag tctgtcttcc
     2461 atgtctccca tcagtagcct ccctgcgctc tttgaccaga catcagcgcc ctgtgggggt
     2521 ggccagttag actccacagc ccccggaaca accaacatgg agcagctgct ggagaagcag
     2581 ggtgatggag aggctggtgt caacattgtg gagatgctga aggccctgca tgcactgcag
     2641 aaggaaaacc agcggctgca ggagcagatc cttagcctga ccgctaagaa ggagcgactg
     2701 cagatcctta acgtgcagct ctctgtgccc ttccctgccc tgcctgctgc cctgcctgcc
     2761 gccaacggcc ctgtcccggg gccctatgga ctgcttcctc aagctggcag cagtgactcc
     2821 ctgagcatca gcaagagccc tccggggaag aactgccttg gcctggacaa caccctgtcc
     2881 acatcttctg aggacccaca ctcaggctgc ccgagccgca gcagctcatc gctctccttc
     2941 cacagcacgc ccccaccgct gcccctgctc cagcagagcc ctgccactct gcccttggcc
     3001 ctgcctgggg ctcctgcccc actcccaccc cagccacaga atgggctggg ccgggcgccc
     3061 ggagcagcgg ggctgggagc catgcccatg gcagaggggc tgttgggtgg gctggcaggc
     3121 agcgggagcc tgcccctcaa tgggcttctg ggagggttga atggggctgc tgctcccaac
     3181 cctgcgggct tgagccaggc tggcggggcc cccacgcttc aactgccagg ttgtcttaac
     3241 agcctcacag agcagcagag acacctcctt cagcagcaag agcagcaact acagcagctg
     3301 cagcagcttc tggcctctcc acagctgacc ccagagcacc agactgtggt ctaccagatg
     3361 atccagcaga ttcagcagaa acgggagctg cagcggctgc agatggctgg gggctctcag
     3421 ctacccatgg ccagcctact ggccggaagc tccaccccac tgctgtccgc gggcacccct
     3481 ggcctgctgc ccacagcatc agccccaccc ctgctgcctg ctggagccct ggtggcccct
     3541 tcactgggca gcaatacaag tctcatggct gcagcggctg cggccgcagc agtggcagcg
     3601 gcaggcggac ctccagtcct cactgctcag accaacccct tcctcagcct gcccggggcg
     3661 gatgccagtg ggaatggctc caaaggaggg gtgagtacgg gacctggacc tcctatatat
     3721 tcctatggga caagcagagg gggatggtta tagcaacgtc atcaaatagg tctccagtgg
     3781 gaggcagcaa cctctaggtc aaccaggcag cctgctgtag acagcaggac gctgccctca
     3841 ttggtgttac ctgagaggag ataaagggct acttagaaaa cagcccttca gcctagtgac
     3901 agcctagtgt gttaaaaa
//
