LOCUS       XM_017600733            4504 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mohawk homeobox (Mkx), transcript
            variant X1, mRNA.
ACCESSION   XM_017600733
VERSION     XM_017600733.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017600733.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017600733.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4504
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4504
                     /gene="Mkx"
                     /note="mohawk homeobox; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 13 ESTs, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 32 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:291228"
                     /db_xref="RGD:1305652"
     CDS             976..2046
                     /gene="Mkx"
                     /codon_start=1
                     /product="homeobox protein Mohawk"
                     /protein_id="XP_017456222.2"
                     /db_xref="GeneID:291228"
                     /db_xref="RGD:1305652"
                     /translation="MNTIVFNKLGGAVIFDDRGTPDRERGSRPYGGVLDNPHTGPEVG
                     IPDGPPLKDNLSLRHRRTGARPGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEK
                     ILLALGSQMTLVQVSNWFANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSS
                     ADDSCSEDGENPPRTHMNEEGYSTPAHHTVIKGESSAIKAGGRPESRAAEDYVSPPKY
                     KSSLLNRYLNDSLRHVMATSTAMMGKTRRRNHSGSFSSNEFEEELVSPSSSETEGTFV
                     YRTDTPDIGSTKGDKGDSTANRRGPSKDDTHWKEINAAMALTNLAQGKDEAQGTTTSC
                     IIQKSSHIAEVKTVKLPLVQHF"
ORIGIN      
        1 gccattcttt cgccttgctc catatgaatt taggttctaa gcctggggtg cttgtagatc
       61 caagtctcct cgcactcggt ctgctgcaca cctggctatg gcagcacagg cacctgagct
      121 ctcctttccc cacccctgtc ttcccgctct gccttcccgc atttctacct ctgcagtgct
      181 cttcccgcga agcggacgct tgcctggcct tgccctccac agccgggact tcgccggcca
      241 gcctagcgac accaaaaggg gttcccaggt gcaagaagct ttaacctcct ggtaatcagg
      301 agggaaacgc ctggggcgtc ttcaccgcct tcacgctccc ggcctagctt ggtgacattt
      361 ccggcaccag gagcagttaa gacacaggat ttgcaccgca acctctgtac tggtgacgcg
      421 agccccgggc tccggacagc ttctcctatt gcttctctga gcgcaagagg aaagaaagaa
      481 ccggtcttgc tgggcgctgc taggcgaaag catccgggag cgttgccccg ctgggaggat
      541 gcgaccgccc gggactcccg gcgtggccgg aggcagcgtc tacgcgagga gttaacagca
      601 gctcccgctg cccggcggac gcgatcgctt cctctctcgc cgcccgggaa catggatacc
      661 gcgcccgcgg gatgttcgcg ggctgggccg ggcagtcggg aaacatgaga aggcttcggt
      721 attccggttc ccgggccgcg cgcgcctgtc tgggtaaata aagccgagac gacgccggtg
      781 gccgcggtga gcgcgttgga gcctgcgccg agaacatgcg gcggggatgg gagtgtgcct
      841 agtcctgaga ccggacaacc agccactggc tgaggtcttc gcggccatag aacccgagcc
      901 ctgctgcgga gctcctggtg gccggactct gaggcgctgc ggcaaggccg ccgcgcgtcc
      961 ctgtcagccc ttaccatgaa taccatcgtc tttaacaagc ttgggggagc tgtgattttt
     1021 gacgaccgag gcaccccaga tcgggaacgt ggcagccggc catacggcgg cgtcctggac
     1081 aatccacata caggcccgga ggtgggcatt ccagacggcc cgcccctcaa ggacaacctc
     1141 agcctgagac accggaggac cggggcgagg cctggaggga aggtgaggca caagcgacag
     1201 gccctgcaag acatggcgcg gccgcttaag cagtggcttt acaagcaccg tgacaacccg
     1261 taccctacga agactgagaa gatactcttg gctctaggct cgcagatgac gctagtgcag
     1321 gtgtcaaatt ggttcgctaa tgctagacga cggctgaaga acactgtccg gcagccggat
     1381 ttaagttggg ccttaagaat aaagttgtac aacaagtatg ttcagggcaa cgccgagcgg
     1441 ctcagtgtga gcagtgcgga tgactcctgc tctgaagatg gagaaaatcc cccaagaact
     1501 cacatgaacg aagagggcta tagcacccct gcccaccaca ctgtgattaa aggggagagc
     1561 tcagcgataa aagctggtgg gagaccggag tcaagggcag ctgaggacta tgtgtcaccg
     1621 cccaagtata agagcagctt gttgaaccgt taccttaacg actctttgag acatgtcatg
     1681 gccaccagca ctgccatgat ggggaaaaca aggcgaagga accattcggg gtcttttagc
     1741 tcgaacgaat ttgaagaaga actggtgtct ccatcatcat cagaaactga aggcaccttt
     1801 gtctatcgca cagacacccc agacattgga tctactaagg gtgataaggg tgacagcact
     1861 gctaacagaa gggggccgag caaggatgac acacactgga aggagatcaa cgcagccatg
     1921 gccttaacaa acctcgccca gggaaaagac gaagcgcagg ggacgaccac cagttgcatc
     1981 atccagaagt cttcccacat agcagaagta aagacagtca agctgccact ggtgcagcac
     2041 ttctagagtg gccagggagt gctgggcttg tcagtgggtt tgtttgtttg tttgttgttt
     2101 gttgtttgtt gtttgttttt taccgtaatc ctcatcctaa gagccaaagc aggggtgaag
     2161 aggactccca tttaaacctc ctgagttcaa ctatcctaaa tatatccgtt gcttctataa
     2221 aaagatgtat aagttataaa aattcatttt agtcaaaaat attaacttat tttatgttac
     2281 tgaaactatg cataaagcgt ctgcattgcc attacagtaa gtgccttgct tccctgaggt
     2341 aagctccaac gtgggcacag tggagcgctg tgcctcaaac tgtcaacgcc aatacttgct
     2401 agactacatc actccagact ggcccaggac tgaagccaat cgcggaaagc tcccgaaaca
     2461 aactcagtca ttcacacgtt caaacttgga gatctgttca gcccagatga ggtgatcttt
     2521 tatttgcctt ttaatgcctt caggactgga aactgttctt tgtgttttcc agggcgatgg
     2581 tgagagtttt atgtgtgggt tttgtttgca taggctagcg catccaaaat ggaaggccca
     2641 gcagggccac gtgatgcgta tgtttaagaa gggatgtttt caaatcggtt taacattgcc
     2701 agagtatatt gtcgtgagga tttgttttcc caagcactgt tggaaagtat cccaaagccc
     2761 tttacaacta attgggattt tttttcctga ggttttaaaa agaaccttat tatataaatc
     2821 tttgaatttt ttcctgagga aaactaaacc taaagtttag ttttaaatta taatcttgtt
     2881 tgcactagag ctcagggttc ctttgtgatg gaagcagctt tcatatggag taactaaaag
     2941 cgttttattt ggttcatttc tttttttaac ggattttttt ttttttttcg gagctgggga
     3001 ccgaacccag ggccttgcgc ttcctaggta agcgctctac cactgagcta aatccgcagc
     3061 cccttatttg gttcatttca aatcccagtt cagatggaca atttgtattg caatgagaac
     3121 aagacaacga agaaaataat ctgtgtgtgt ggatatacat atacatgcag aaggattaat
     3181 gtttaaaatt taaagcgtat gggtaacaaa acatgaatgg tctctgattt ttgccaagca
     3241 ggacattcaa gtaaaaatta agtgaaatct tgagtcgaaa ggaagaaagt cttatttcta
     3301 aatgtcacta ccacagagtg agagtaatgg atatcaagga agaagagtgt cttttccatc
     3361 aaacaataac gtcctcccca gcttcggaag actgcgaacg gaagggatgt ggagacgccc
     3421 aatagaaaag gaaatctgga gatgccttaa tgtaggagag caaaggttta acggcaaact
     3481 aggctcttgg gggaagggca ttttttctgg atatgtgata tattttgtaa ttggtttagg
     3541 ctggaaaaca tttttgcaag tgtgaatgac atctggtttc accgcacaca ctgacatttt
     3601 tttcttcatt ttacaaaacg ctttttaccc tgaaggttaa tctggttgct cagcagacac
     3661 gacggcctcg atggccatcg taggacactt tctcctgtat catagcatag tggggtgggg
     3721 gttatctagt gtaatgaaga taatttgata tgaaaatatt ttgtatgtat atttttactt
     3781 tgttttctta agtgccgttg gcagttgcag taagccctag gtgagatgtg taagtgctga
     3841 ctgtatgagt ggatgaagta ttggcttctt ctggtgcatc cttgatactg ggatgcgaag
     3901 tgggagtcac tacaaaacaa gcctgcccag atgtatgcga ggcagtgaga aacaagaatg
     3961 aatacttcac tccttttcat actattataa gttattctgg tattaaatat tttaataaaa
     4021 atgttcttgt tttaacatgt tgcaattaga taagtgaact ctgggttgta ttttatttga
     4081 aattgtcatg ttttattttt ttctgtcctt tgggggaaaa ttcagctaat ttgttctgta
     4141 ttatgaacac aaccaatgag aggatactat cccataattt ctgtaaagta acaaagcttg
     4201 gagtctggcc tatgcacaca tgaaaaatag gtaattagca tattctgggc aatgtctcca
     4261 attgcaatca ttttgaattt attatttttc ttgtgttgct gttgttttat ctggaaatca
     4321 gagtcccttg tccctcaaaa gaaccttgaa caatgccaag ccagcagccg agagagagag
     4381 cttggctgac atgtaattta tatgaaagag aaagagactt gctctcattt tacagttgta
     4441 tttgaataaa attaaaatct gtcaggagtt cttgacagat ttaaaataaa agttcatttc
     4501 taga
//
