LOCUS       NM_001109531            4059 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Rattus norvegicus MIS18 binding protein 1 (Mis18bp1), transcript
            variant 2, mRNA.
ACCESSION   NM_001109531 XM_001070314
VERSION     NM_001109531.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4059)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CH473947.1.
            
            On Oct 4, 2007 this sequence version replaced XM_001070314.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMD00132261, SAMD00132262
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4059
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..4059
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /note="MIS18 binding protein 1"
                     /db_xref="GeneID:689296"
                     /db_xref="RGD:1594757"
     exon            1..189
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /inference="alignment:Splign:2.1.0"
     exon            190..808
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /inference="alignment:Splign:2.1.0"
     CDS             280..3252
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /note="isoform 2 is encoded by transcript variant 2;
                     mis18-binding protein 1"
                     /codon_start=1
                     /product="mis18-binding protein 1 isoform 2"
                     /protein_id="NP_001103001.1"
                     /db_xref="GeneID:689296"
                     /db_xref="RGD:1594757"
                     /translation="MILTPLKHSGIHLSSGTLQRRNIPLDAVFIDSIPSGTLTPVKDL
                     VKYQKSSLKLKVHQNNQLLETTTSNNKNIFQSTMLSGTTPLNRSFDVSVIKPNMDRLK
                     NETIYESPQKIFQRMKEKVQRDKEELSRISSMLASPKCEHKVFPLNRDKETRLQHTYI
                     CEEKEKSFQSNNPSLEDPPVLNQEQKYVLASCISRKALTRAQFGRQVLHSKESPVKTT
                     VSKKNTFVLEGIDSTYEKFESTDVSTISTICVPIKNHSQLTTSNNDMTTENTAKEDIT
                     EQNDKTTSRRTVLQDPIRNTSEIICANPRLNSTISGQPQRKLTKLETIVGEVKKYQVV
                     KLQEWMIKVINNNTAICVEGKLVDMTDVYWHSNVIIERIKYNELRTLSGNTYILKGML
                     DQASMKEAGYPCYLIRKFMFGFPRKWKEYIDDFLEQLRAEEKNKNKTRQKTARFQEKQ
                     KSIKNDAEDKQTDILRKASVTYDLNDDSLERTEVLNVPIDPLKSLEQPTSNKERHPPL
                     GQKEAYVLMTPLRTTKLIEQRCMEHSLSIEGVRGFLKANHQEESESDVHGMSTSKSSE
                     TFEHSVDYKGSSKEDCSKCDIITVTHSIPIPCPKSKQMFTNDFKKKNKLPSKLQKTEN
                     QIDVSLYSQSSSHLSSKENEIEVKGKTRARNKKQRLDQQRKNTNYITKDILISESSGE
                     SGSYVTPKKPRSSAKESHYKSDITKDFLIEVKASDTTNGQLLDHQPGSTDDGEWNEQE
                     LQKLHRAFASLPKHKPGFWSDVAMAVGSRTADECQKKYTEEPQGRGSRKYVSKKKQAN
                     FKVQNGEADDADDKQTVKITARVGTLKRKRQMRDYLEQLPKDNHDDFFTATPLQKQRI
                     QLPSFQYSQDDDFLLAMDRNPVSPASITSTLTSTTPKCQHVSPSMLASINRNDCDKYI
                     YHMQKNAKKYGKSNGNLVWGNIRKKTVETDLSSPTPTRKALFNKDLGENTDIAKYFID
                     DRESDEEEKDYYFSSSDL"
     exon            809..1275
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /inference="alignment:Splign:2.1.0"
     exon            1276..1349
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /inference="alignment:Splign:2.1.0"
     exon            1350..1480
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /inference="alignment:Splign:2.1.0"
     exon            1481..1568
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /inference="alignment:Splign:2.1.0"
     exon            1569..1717
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /inference="alignment:Splign:2.1.0"
     exon            1718..2516
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /inference="alignment:Splign:2.1.0"
     exon            2517..2689
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /inference="alignment:Splign:2.1.0"
     exon            2690..2850
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /inference="alignment:Splign:2.1.0"
     exon            2851..2999
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /inference="alignment:Splign:2.1.0"
     exon            3000..3099
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /inference="alignment:Splign:2.1.0"
     exon            3100..3154
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /inference="alignment:Splign:2.1.0"
     exon            3155..4059
                     /gene="Mis18bp1"
                     /gene_synonym="RGD1305497"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcgctgttg tctgtgttga ggtagtgagt gcggaagtcg agtgtagctc cagcctgtgc
       61 cactgcggtt ttacgtgtca cccttgcccc ggcctccgtg cgtctgaggt gctgcgagcc
      121 ctggggctcc aggcccctgg gcttggagcc gagcggtagc cacggccacg cggtgctgcc
      181 ctcactgagg ttctctggac tccttctgaa gttctgtctg gaattttgtg ttgattgaac
      241 tttctataag aagaattttg tcaccactgt cctatcaaga tgattttaac accattgaaa
      301 cattcaggaa ttcatttgtc ttctgggaca ttgcaaagaa gaaatatacc tctagatgca
      361 gtctttattg acagcatccc ttcaggcaca cttactcctg tgaaagactt ggtgaaatat
      421 cagaagtcct ctctaaaatt gaaggtccat caaaataatc agttattaga aacaacaact
      481 tctaacaata aaaatatatt tcaatccacc atgctatcag ggactacccc tttaaaccgc
      541 tcttttgatg tcagtgttat aaagcccaac atggatagat taaaaaatga aacgatttat
      601 gaatcaccac aaaaaatctt tcaaagaatg aaagaaaaag tacagcgtga caaagaagaa
      661 ctgtcaagga tcagttccat gttggcatca ccaaaatgtg aacataaagt ctttcctctt
      721 aacagagaca aggagactcg gttgcaacat acctatatct gtgaggaaaa agaaaaatca
      781 ttccaatcca ataacccttc attggaagat cctccagttc tgaaccaaga acagaaatat
      841 gttttagctt catgcatttc aaggaaggca ttaactagag cccagtttgg cagacaagtt
      901 cttcattcaa aagagagtcc tgttaaaacc actgtgtcca aaaagaacac atttgttttg
      961 gaaggcattg attctactta tgaaaagttt gaaagtactg atgtgagcac cattagtact
     1021 atttgtgttc ctattaagaa tcatagccag ttgactactt ctaataatga tatgacaaca
     1081 gaaaatacag caaaagaaga tattacagaa caaaatgata aaacgacatc tagaaggact
     1141 gttcttcaag atcccataag gaatacatct gaaattatat gtgcaaatcc aagactcaat
     1201 tcaacaatat ctggccaacc tcaaagaaag cttacaaagc ttgaaactat tgtaggtgaa
     1261 gtaaaaaaat atcaggtagt caagctacag gaatggatga ttaaagtcat caataataat
     1321 actgctatat gtgtagaagg aaagttggta gatatgactg atgtttattg gcatagtaat
     1381 gtaatcatag agcggattaa atacaatgaa cttaggacat tatcaggcaa cacatatata
     1441 ttaaaaggaa tgctagacca ggcttccatg aaagaagcag gatatccctg ttatctcata
     1501 agaaaattta tgtttggatt cccgagaaag tggaaggaat acattgatga ttttctagaa
     1561 caattaaggg ccgaagaaaa gaacaagaat aaaaccagac agaaaactgc aagattccaa
     1621 gagaaacaaa aatcaataaa aaatgatgca gaagataaac aaacagatat cctccgaaag
     1681 gccagcgtca cttatgacct taatgatgat agcttagaga gaactgaagt tttaaatgta
     1741 cccattgatc cattgaagtc actggaacag cctacctcca acaaagaaag acacccgcct
     1801 cttggtcaga aggaagctta tgttttaatg acaccactta gaaccacaaa gttgatagag
     1861 caaagatgta tggaacacag tctctctatt gaaggagtaa ggggttttct caaagcaaac
     1921 catcaagaag aaagtgagtc agacgtacat ggaatgtcta ccagcaagtc ctcagagacc
     1981 tttgaacaca gtgtggatta taaaggcagt tccaaagagg actgcagcaa atgtgacata
     2041 atcactgtca cacatagcat tccaatacct tgtcccaaaa gtaaacaaat gttcaccaat
     2101 gactttaaga aaaagaacaa gttgccctcg aaactgcaga aaactgaaaa tcaaatagat
     2161 gtatcactgt atagtcagtc ctcatcacat ttgtcaagta aagagaatga aatagaagtt
     2221 aaaggtaaaa ccagagcaag aaataaaaaa caaaggctgg atcagcagag aaaaaacaca
     2281 aactacatca caaaagatat cctgatttca gaatcttcag gtgagagtgg ttcttatgtc
     2341 acaccaaaga aacctagatc ttctgctaaa gaatcacatt acaaatctga tattaccaag
     2401 gactttctaa ttgaagttaa ggcatctgat acaactaacg ggcaactgtt agaccatcaa
     2461 cctggttcaa ctgatgatgg agaatggaat gaacaagagt tacagaaact tcatcgtgct
     2521 tttgcatccc ttccaaagca caaacctggc ttttggtcag atgtggctat ggcagtaggt
     2581 tctcgaactg ctgatgaatg ccagaagaaa tacacagaag aaccccaagg cagaggatct
     2641 cgaaaatatg tctctaagaa aaagcaagcc aacttcaagg tccaaaatgg tgaggcagat
     2701 gatgctgatg acaagcaaac tgttaagata actgccagag tgggaactct taaaaggaaa
     2761 cgccaaatga gggattatct ggaacagttg ccgaaagaca accatgatga ctttttcact
     2821 gcaacaccct tgcagaaaca aagaatccag ttgccaagtt ttcaatacag tcaagatgat
     2881 gatttcctgc tagctatgga caggaatcca gtatctccag catccattac ttcgacattg
     2941 acaagcacta ctccgaaatg tcagcatgtc agtcctagta tgctagcttc tataaacagg
     3001 aatgattgtg acaaatatat ttaccacatg caaaaaaatg ctaaaaaata tggcaagagt
     3061 aatggtaacc ttgtctgggg caacattagg aaaaaaacag ttgaaactga tctctcatct
     3121 ccaacaccaa cacgaaaagc cctgtttaac aaagatttag gtgaaaacac cgatattgca
     3181 aagtatttca ttgatgatag agaatcagat gaagaagaga aagattatta cttttccagt
     3241 tctgacttat agtaaaacgg atttgcagga attttaccat caagcagaat atacttatac
     3301 tttcatttga tgactcacta ttctctttgt agtaagggaa tgcagatttg tctcccaaag
     3361 atgtcctatg tttgtatgca aggtaaacgc cctaagagca ttcctcagaa tgctgttaca
     3421 gctaatgagt atgattattt tgcctgtgta tgcatttgta aattgtatgt ttgtaatgtt
     3481 aatgtatata aagctcaatc tcttgaacat ccaagactgt ttattttagt aatcatgtct
     3541 caaatacatt tttaaataaa aatttaaaag cccttaaatg aagtgaggta agggtctgga
     3601 tttaagagtg tggattggca gatactagaa tggaaacttt tagcatcatg cacaagcccg
     3661 agttccttct ctgtctaagt tatgtaattc aaactgtttc acatgttttt atgttttaca
     3721 tgctttttct tctgatagtt tctcttaaat ttactataca ttggtctgtt tgtgtctcta
     3781 tctctaattc attgttcttt attattttat aaattaaagg aaccagagga caggttctgt
     3841 tatattctgt agccctgtta tatatagttg atagatccac cattataagg aattataatg
     3901 ccagaataaa caggttttcc gtttttgaca gctttaaaag gtaactttca ttctgccatt
     3961 gttttaaagt ttggcctgtt atttgtcctc tggctataat atgtattcat cttcactttg
     4021 catccagtta gactgctcaa ataaaaatgt aaacttgtg
//
