LOCUS       XM_039113186            5400 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mirror-image polydactyly 1 (Mipol1),
            transcript variant X8, mRNA.
ACCESSION   XM_039113186
VERSION     XM_039113186.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113186.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5400
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5400
                     /gene="Mipol1"
                     /note="mirror-image polydactyly 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 5 ESTs, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:100911970"
                     /db_xref="RGD:6504372"
     CDS             270..1208
                     /gene="Mipol1"
                     /codon_start=1
                     /product="mirror-image polydactyly gene 1 protein isoform
                     X5"
                     /protein_id="XP_038969114.1"
                     /db_xref="GeneID:100911970"
                     /db_xref="RGD:6504372"
                     /translation="MSVRIKLEALVEEVYFAQRERDEAIMCRLQLALEERDEAIARMK
                     HMEMSLKMLENINPEENDMTLQELLNRINNADTGIAIQKDGAVIVDRIYKTKECKKRI
                     TAEEMSAVIEERDAALSQCKRLHQELHRLKEQNQTSANNTRHPTAENNQERALKAKLL
                     SMQQARETAIEQYKRLEEEIQTLRVYYSLHKSLSQEETLKDQFNHALSIYEDALKNRE
                     SVVSITQQQNEELATQLQQALTEHADMELQLQCAVEVSRAASEKVQKHTTCSSIFLVN
                     AWQLKYKAHTVPWLMLERLVDVLRKKVGTGTVRTVI"
ORIGIN      
        1 cagtgtggaa tgtggaaaga attatgaatc tgtgatttat catcaagtta tctctgactt
       61 aaataaagag acatcagtag catatcttca aaaagaattg gaaattctca gagcaaacaa
      121 taaaaagtgg tggctttact ttgctttgtc atccagcttc aagaaaaatt ggctaaagaa
      181 gataaagaaa agagaaaatt aaagcttcag ttggacctcc acgaaaaagc agcagaggct
      241 gccattgcgg aaaggactgc aggtagtgga tgagtgttcg cattaagctc gaagctttgg
      301 ttgaagaagt gtattttgca cagcgagaac gtgatgaagc tattatgtgc agactacagt
      361 tagcccttga ggagagagat gaagccattg cacgtatgaa gcatatggaa atgtcactaa
      421 aaatgctaga aaatattaac cctgaagaaa atgacatgac attacaggaa ttactgaaca
      481 gaataaacaa tgcagacact gggatagcta ttcagaagga tggagctgta attgtggata
      541 ggatctacaa gaccaaggaa tgtaaaaaga gaataactgc agaagaaatg agtgcagtca
      601 tagaagagcg ggatgcggct ttatctcagt gcaaacggct gcaccaggag cttcatcgtc
      661 tgaaagagca gaaccagact tcagcaaaca acacgagaca tccgactgct gaaaacaatc
      721 aggaacgtgc tctgaaggca aaattattat caatgcagca agccagagaa actgcaattg
      781 aacagtacaa aaggctggaa gaagaaatcc agacattacg agtttactac agtttgcaca
      841 aatcattatc tcaagaagaa accttgaagg atcagtttaa ccacgccctt agtatctatg
      901 aagatgcctt aaaaaaccga gagagcgtgg tctccatcac tcagcagcag aatgaagaac
      961 tggccaccca acttcagcag gctctcactg agcacgcaga catggagcta cagcttcagt
     1021 gtgccgtgga ggtctcccga gcagccagtg aaaaggttca gaagcatacc acgtgctcct
     1081 caatctttct ggtgaatgcc tggcagttaa agtacaaagc ccacacagtg ccttggctga
     1141 tgttagaaag gttggtggat gtcctgagga agaaggttgg aacaggaact gtgaggaccg
     1201 tgatctgact gaaagccacc cagtctgggg gagcaatcac atctggtgac caggctgcct
     1261 cattcagcac tgtgtaaaca ctaaaagcct taacttagca aacagttgtt agaagtggga
     1321 cactccaacc acattccaag ctgagataaa atcaaatcac aaatgtttaa ccactttgct
     1381 gctgacttca gttatttatc caaatatatt aactacaggc ttttaccagc tataacactg
     1441 cagcttattt tgtagctgtt ttatatttgt gccttcaatg taaatctttt agccagtgta
     1501 ctataaaaag acgtgtgaag tccgtcagga tcggagcccc gcatatggcc ctttctgaat
     1561 caaagtgcag caaagtaaat attgtccaag ccttaatcca ctgtgttagg tcaaaacttc
     1621 aaataaatgc gttttcagta tagagtatat ttcttagctg atgggagacg ctcagacatg
     1681 agagaatgta ggctaccttc aatgtatgta tgaagctatt gttcttgata ttgaagaata
     1741 tggtatagat gccttgaatt aaatgtataa tttactttaa tcgtacaata aatggcagtc
     1801 accaagacat gatttttgtt tcactataaa taatatacac tgttttcaat aaaaagggct
     1861 attaaagtac acttacacat aaatattgtt ggtatttttt aacgttgagt ctaggtaact
     1921 atctaagcat catttaagct gtagaaagag ccaaggttct gctcataatc tgggacgctt
     1981 tgggcttgga agctagcatg agccagtgag catgtctcta tcctaaacgg caagaataca
     2041 ccaaacctgt tagcattctt attatgtttt agattactat ttttgctgtg gtagaaggga
     2101 atctaatata aaatatacaa aaaattccaa atatgaggac ttagaaaaaa gcattcttgc
     2161 aatttggttc aaattactac ttttgaattt atttaagata taacttaaaa taatgaaaac
     2221 atagccactt atatgatgtt atgaatactt atgaaaaata ttgtcaattt tacagattgg
     2281 atagctgaaa ggtcaaacct tgaacagaat gaaatggaga aaagaaaaaa aaatgagtta
     2341 gtgaaatttt atatgcggga acttttctaa gttcctaact catctattag agtgagctaa
     2401 agtatttatc atttcctgtt ttcaggttaa atatgttcag aaggtagact ataccatttt
     2461 ttatatgcca ttagaaatag ccattttatt tctctttcaa ctctgaagaa tattttgagg
     2521 tcatttgtca tagatgaaat atgaatcaaa atactgatac actattttcc tgtaaatctg
     2581 taaaatgaag actcatcccg ctgcattcag ctttgaagtc tactcttgtt tcatgctctc
     2641 agtgatttta aattacgaga gtcgcaagag aaatggcagc gggcattaaa agtaaacaac
     2701 tgcgcttgtt tccaagtcac agagagcatc acaggctctg atagaccagt gactccttaa
     2761 acatggaagt tggtgctagg gttgcttgtt ctcgtgctgt aacagccacc tggcccaccc
     2821 ccttgtgaag acatggcatc tttcaactta cccagggtaa gtatagaaaa tacccattcc
     2881 tgaatgcttc taacacactt gcgggtaaaa gttgaatttt gtttattttt tagaaacaga
     2941 cactttcctg aagttattta ctctgaagtc ttagaacact gagcgcaaat gaaaatgttt
     3001 tataacttcc aaatgtcgct ttgagcaacg gttcctgtac tgttgtacag agcaagagat
     3061 tataaaatga aactcacgaa acacttctaa catccacctc atttaagaat aggttcccca
     3121 aagccttccg aaatgtccca gacaactttt gtcttgagtt cttacactta aaaatgccca
     3181 ccaacactcc ttcaagtaat cgctattttt atgtggagga ataaccgtaa tcgctgaaaa
     3241 tccatttgcc acgtactaaa cagcagtgca tccattacag agtcccattt gccgtgtttc
     3301 cttgagtttg ccgtaggtac caccaagact gttcctatag cagcaggaga gttcacttct
     3361 taaaaaaata agcaagtcgt ttaaagaaaa gatcagcgtt ggttgtaaca cttgaactgc
     3421 aaaccatttc acatctctct gtatttgact ctaccagcag ccgcatgatg attacgcaga
     3481 ttttagtatc gattttattg ttttatgatc attgttaatt atcgtgattc tgatgagaaa
     3541 acaaatgcag agccttttgg aacttcccag aggactgagg tcttgtaact gtcccccatg
     3601 taggtctcta agccttactg gaaggaaaag aatagtatag caagtatttt tttttctttc
     3661 ttcagacact tgtattgatt ctttgaatat ctcctacaat gtattttaat catattttcc
     3721 actaactgct ccccattagc tcttccaaga tcctccacca aatccttatc tgccctgact
     3781 ttcggtcttt attttaaatt taataaccta gcaatcaaaa tttgtgatgt ctgtataact
     3841 attggtgcag ggatatccac tggagcatag cgaagatttt aatgtctgct gctacacaga
     3901 tgtctttatg gtcaactcgt gtattgctct ggtagaaaac ccaagttgtt tcacagtacc
     3961 caagtcaggt gcctcatagc tttctataac tctggtctga gggacccaac accctctgac
     4021 ctccatgggc acctgtattc acacaagaca cataaaagtc aagtaagcac acacacacac
     4081 cataaatatt aaacattttc aagttctgtc atctctgcta ctattctttc atttcctctt
     4141 tatatgtgtg catgacttct ctagtaatct aaagattata tacgtctctt tctgtgtagt
     4201 tcaatgtaaa cggcacacgt aaatctcttg acattattgt cacctctgtg cactgtataa
     4261 cagcgtgaac tttgcctcag ccttccttaa acctaggcag gagtattcta aactgctttc
     4321 aatttgatct cttgcaaaac ccaatgctgc agtgttacaa aaatcgtaaa gtatatttcc
     4381 aacacactct gcttcctaca atgcaaattt tataaaaacc agttacagtg atggcttaca
     4441 agcaatatat aagcattgaa acaaaattaa tgattgatat aaaataacta tgataaataa
     4501 gccattgtgt tttaagctaa ttagtaaaag tgctttttga aataaatatt ttaagcttct
     4561 attttgtgta tctccttatc aaaataaact gaagaatctt attggacaac ttactaatag
     4621 aatttgctta tttcacacaa aaaaggttta aaagatttgt gggttcaata agaaaagggg
     4681 tgcatagaaa ttaatttgca tctagctttc tagagattat aataacttct tgaagttccc
     4741 accatcagat gctgattaga cgtaaggcat tatatgatgc agtaaccatc acatgtccag
     4801 tcaccttgca tgcagtttgc gtggtacaca gagttctcac atagattaat gtgttcctgg
     4861 taacccattt acagttatcc tctgtgttcg gttattgcat acataaccac acatacacac
     4921 agaagcatat ttgcctgttt aaaattgatt tgtaagtcgg ttgtcaggct ccagtgagca
     4981 gcgttttgtg catgtttggt tggaagtgca tgtggtttct ggggctttta aacaaataga
     5041 tgaaatggtt gaaagattta tattgcccat gcttagctaa atatgtcatc tctagaaaag
     5101 atgtgattta ttttggcacc gttctaaaac tcaaatattt taaacatttg ttaagttgga
     5161 gcttgcacat ttgaactagt agcatacgtt ccaaaccagc atctcgagtt accaaatgtt
     5221 ttgtaatcct tttactgaaa tagcccttac tgaaaagcct ctctctttca ctgtgttctt
     5281 tagtatgagt ttacatctag aaaggttgaa gtggttttcc atgtaagtct tcacaagcag
     5341 aatttgacaa tgataaatgt gcatttttaa gaatcattaa aatgactttc ttactgagaa
//
