LOCUS       XM_039093685            2389 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mitochondrial intermediate peptidase
            (Mipep), transcript variant X1, mRNA.
ACCESSION   XM_039093685
VERSION     XM_039093685.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093685.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2389
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2389
                     /gene="Mipep"
                     /note="mitochondrial intermediate peptidase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 18 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     30 samples with support for all annotated introns"
                     /db_xref="GeneID:81684"
                     /db_xref="RGD:621680"
     CDS             127..2202
                     /gene="Mipep"
                     /codon_start=1
                     /product="mitochondrial intermediate peptidase isoform X1"
                     /protein_id="XP_038949613.1"
                     /db_xref="GeneID:81684"
                     /db_xref="RGD:621680"
                     /translation="MLLAAGTRYAYRLCGRRAAAALQGHAGRSCARSVSTSWSPVGAA
                     FNVKPQGHLWDLLGERRGLFGVPELSTPEGFQVAQEEALRKTEWLVERACSTPPGPQT
                     VLIFDELSDCLCRVADLADFVKIGHPEQAFREAAQEACRSIGTMVEKLNTNVELYQSL
                     QKLLDDKKLMDSLDAETRRVAELFMFDFEISGIHLDEEKRRRAVDLNVKILDLSSAFL
                     MGTNFPIKIQKHLLPEHIQHHFARDGRHLVIDGLHAEASDDLVREAAYKIFLYPNADQ
                     LKCLEELLSSRDLLANLVGYSTFSHRALQGTIAQTPETVMQFLEKLSEKLCERTRKDF
                     EMMQGMKTKLNPQNSELMPWDPPYYSGVIRAERYNIEPSLYCPFLSLGACMEGLNVLF
                     NRLLGVTLYAEQPFKGEVWCIDVRKLAVVHESEGLLGYIYCDFFQRANKPQQDCHFTI
                     RGGRLKEDGSYQLPVVVLMLNLPHASRDFPTLLTPGMMENLFHEMGHAMHSMLGRTRY
                     QHVTGTRCPTDFAEVPSILMEYFSNDYRVVSQFAKHYQTGQPLPKAMVSRLCESKKVC
                     AAAEMQLQVFYAALDQIYHGQHPLKKSTTDILMETQEQFYGLPYVPDTAWQLRFSHLV
                     GYGAKYYSYLMSRAVASMVWKECFLQDPFNRAAGERYRREMLAHGGGKEPMLMIQVLW
                     RNSFLLLPS"
ORIGIN      
        1 gacgctcttg ctaacgagag tcagcgtgca ccagtcgggt ctgcaacgcg agtgcccagc
       61 gcaagctgct accttggaaa cgcagggcgc gcgcttcctg agcgtggcag agccggggtc
      121 ccgaggatgc tgctggcagc cgggacgcgg tatgcctacc ggctgtgcgg ccggcgagcc
      181 gcggcggctc tgcagggaca cgcaggccgg agctgcgccc ggagcgttag cactagctgg
      241 tccccggtgg gcgctgcctt taacgtcaag ccccagggcc acctgtggga cctgttggga
      301 gagcgacggg gtctttttgg agttcctgag ctcagcaccc ctgaaggatt ccaagttgcc
      361 caggaggaag ccttgaggaa gacggagtgg ctggtagagc gagcatgttc cacacctcca
      421 gggccacaga cagtcctcat tttcgatgag ctctcggatt gcctctgcag agtggctgac
      481 ttggcggact ttgtgaaaat tggacaccca gagcaggcgt tcagagaggc tgcgcaggag
      541 gcctgcagaa gtattggcac catggtggaa aagttgaata cgaatgtgga attgtatcag
      601 agtctgcaga aattactaga tgacaagaag cttatggatt cccttgatgc agaaaccagg
      661 cgagtagccg aactatttat gtttgatttt gaaatcagtg gaatccatct agatgaagaa
      721 aagcgcagaa gagccgtgga cctcaatgtt aagatcttgg acttgagtag tgctttcctc
      781 atgggaacca actttcccat caagatccag aagcatctct taccagagca cattcagcac
      841 cactttgctc gtgatggaag gcatttagtc atcgatggtc tacatgcgga agcctccgat
      901 gacctggttc gggaggctgc ttataaaatt ttcctttatc ccaatgctga tcagttgaag
      961 tgtttggagg agttgctaag cagccgagat cttctggcaa acctagtagg ctattctacc
     1021 ttttcccaca gggccctcca gggaaccata gcccagactc cagagactgt catgcagttc
     1081 cttgagaagc tatctgaaaa gctctgcgaa agaactagaa aagattttga gatgatgcaa
     1141 ggaatgaaaa caaaactaaa tcctcaaaat tctgaactaa tgccttggga ccctccctac
     1201 tacagtggtg tgattcgtgc agagaggtat aatattgagc ccagtttata ttgtccattc
     1261 ttatcccttg gagcttgcat ggaaggcctg aatgtcctat ttaacagact gttgggcgtc
     1321 accttatatg cagaacagcc cttcaaagga gaggtgtggt gtattgatgt ccggaagctg
     1381 gctgttgttc atgaatctga agggttgctg ggctacattt actgtgattt tttccagcga
     1441 gcaaacaagc cacagcagga ttgccacttc accatccgag ggggcagatt aaaggaagat
     1501 ggcagctatc agctcccagt tgtggttctc atgctgaatc tccctcatgc ttccagggat
     1561 ttccctacct tattaactcc tgggatgatg gaaaatctct tccatgaaat ggggcatgcc
     1621 atgcactcaa tgctcggacg aactcggtac cagcatgtca ctgggaccag gtgccctact
     1681 gactttgctg aagttccgtc tattctgatg gagtattttt caaatgatta ccgagtagtc
     1741 agccagtttg ccaagcatta tcagactggt cagccactgc cgaaagctat ggtgtctcgt
     1801 ctctgtgaat ctaagaaggt ctgtgccgcc gcagaaatgc agctgcaggt cttttatgcc
     1861 gccctggatc aaatctacca tggccagcat cccctgaaga agtcaaccac agacatcctc
     1921 atggaaacac aagagcagtt ttatggctta ccctatgttc ctgacactgc ctggcagctg
     1981 aggttcagcc acctggtggg atatggcgcc aagtattact catacctcat gtccagggct
     2041 gtggcatcca tggtctggaa ggagtgcttc ctacaggatc cctttaacag ggccgccggg
     2101 gagcgctacc gcagagagat gttagcccac ggtgggggca aggaacctat gctcatgatt
     2161 caagtactct ggagaaacag cttcctgctc cttccttcat gaagcagctc tgatgatgta
     2221 ggattgggaa ggctactgac ctatctaaag gggaacagtg atgtttgcac ccatgctcac
     2281 ctatcaccgc aatcaagatc atgaactcaa atgactctgt ttccaaagcc caagcagcca
     2341 gaacagtcac agctacagca gccgctcgcg tgagtgtgac acacgctcc
//
