LOCUS       XM_039103911            2055 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MINDY family member 4B (Mindy4b),
            mRNA.
ACCESSION   XM_039103911
VERSION     XM_039103911.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 12% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2055
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2055
                     /gene="Mindy4b"
                     /note="MINDY family member 4B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 54% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:108350017"
                     /db_xref="RGD:11362385"
     CDS             1..1455
                     /gene="Mindy4b"
                     /codon_start=1
                     /product="inactive ubiquitin carboxyl-terminal hydrolase
                     MINDY-4B"
                     /protein_id="XP_038959839.1"
                     /db_xref="GeneID:108350017"
                     /db_xref="RGD:11362385"
                     /translation="MSTSRPTNFCYRRSNQVGKQSCNSPGNNFLKVKNGEGLVAQAVT
                     LSLVAPSSNTHIKQHNLRLFDTHNVTQNHDGSHRFAEETGGGSRMSPSQGQRQLSSSG
                     VCSIPRLAVISSKLHGFPISPAMATMLQRSLFGNTNQVLGSDWRKAHFKFHDPFSDLA
                     FALQVEKGGAQSIQMAVQGSIIKYLLFAREGKDCSLHSLCNLSQREQEQALAAVLAGI
                     LWAAGTAQKAIVCFVTKDIHSTSTLDCSRDNFIERLQLFEFSEKEATEKFVYDHLQRF
                     QGEGSHGVILFLYSLVLSRTFERLQKDLDSTTTHLLQSQAGGILCRQAVLNMILTGRA
                     SPNVFNGYEEGRSEGALHGVLTRSDVGYLQWSKDTAEGDQLSQVGSRLKTPVFPIWLC
                     NINGNYSILFCTNRQLLSDWKMERVFDLHFYSGQPSQQRPVHLTIDTHSHQWERGHHE
                     DKRGSGRRFSSLEMLIRTKWREATINWNGTSPFF"
ORIGIN      
        1 atgtcaacaa gccgtcccac aaacttctgc tacagaagat ccaaccaggt tgggaagcag
       61 tcatgcaact ccccaggtaa taactttctc aaagtcaaaa atggagaggg gcttgtagct
      121 caggcagtga cgctctctct agttgctcct tcttcgaaca ctcacattaa acagcataat
      181 ttgcgtttat tcgacacaca caatgtcacc cagaatcatg atggcagcca tagatttgct
      241 gaggaaactg gaggtggatc cagaatgtcc ccatcccaag gacagagaca gttgtcatcc
      301 agtggtgtct gttctattcc gagactcgcc gtcatctctt caaaactgca tggttttcct
      361 atctccccag caatggccac aatgttgcaa agaagcctct ttggaaatac gaaccaagtc
      421 ctcggcagtg actggagaaa ggcacatttc aagttccatg atcccttctc tgatctggct
      481 tttgctttac aagtcgaaaa gggaggtgcc cagagcattc agatggctgt tcaaggatct
      541 atcatcaaat atttactgtt cgcaagagag gggaaagact gcagccttca cagcttatgt
      601 aacctgagcc agcgtgaaca ggagcaagcc ctagctgctg tgttagctgg catcctgtgg
      661 gctgcaggca cagctcagaa agccatcgtc tgctttgtca ccaaagacat ccatagcact
      721 tcaactctcg actgctccag agacaatttc attgagaggc tgcagctgtt tgaattctca
      781 gagaaagaag ccactgagaa attcgtctat gatcatttac agcgtttcca aggagaagga
      841 agccatggtg tcatcctctt cctctacagc ctggtcctct ccagaacatt tgagaggctt
      901 cagaaggacc tggatagcac caccactcat ctcttgcaat ctcaagctgg aggcatcttg
      961 tgcaggcagg cagttttgaa catgattttg actgggagag caagtccaaa tgtcttcaat
     1021 ggctatgagg aaggaagatc tgagggagca ttacatggag tcctgacccg cagtgatgtt
     1081 ggctacttgc agtggagtaa ggacactgct gagggtgacc agctctcaca ggtaggcagc
     1141 aggctgaaga ctcctgtgtt tcctatctgg ctgtgcaaca tcaacggaaa ttacagcatc
     1201 cttttctgca caaataggca gctcttatca gactggaaaa tggagcgcgt ctttgatctg
     1261 cacttttaca gtggccagcc ctcccagcaa aggcctgtgc atcttacaat agatactcat
     1321 tctcaccaat gggaaagggg gcaccatgaa gataaacgcg gatcgggaag acggttttct
     1381 tcgctggaaa tgttaatcag aaccaaatgg agagaggcta ccatcaactg gaatggaact
     1441 agtccctttt tctaaaaaga aaactaggaa ggactctgaa gggtcagaac aaaaaggatg
     1501 aaaatgtgca gtgcaggggt gggcgtttaa ttcctatatt tcccctttcg cgagtcccac
     1561 tgagaagcac ccctgttggt ttctcattct ttcgctatgc tgtgcctttt cagtcattat
     1621 cagtgctgta gagaatgtgt ttttatccca gggtctgagt ggtaattcct tcatttaatt
     1681 cagaagagaa aacactgtct ctcctcttca tgttttccga attgttcttt ttctgtggct
     1741 tcactaagac tggaggctga ggctcacttc catttgagga tgaagtcatc agagtgcatc
     1801 atcggctttt agtcatggca acagctcaag tcttctcgag ccttcctggt acaggcagtg
     1861 ctcctctcca aggacacctc tcacagggcc acattagcta aggggcctcc tcctactggg
     1921 agagggcggt gcccagtggg ggaggagctc tgcaggtgct cagacgactc aagcagttaa
     1981 aacatcaggc caaaggagac attcttccta ccggtattct ttttgtttct ttctcttaag
     2041 gtagatataa ataat
//
