LOCUS       XM_039108680            8745 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MINDY lysine 48 deubiquitinase 4
            (Mindy4), transcript variant X1, mRNA.
ACCESSION   XM_039108680
VERSION     XM_039108680.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108680.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8745
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8745
                     /gene="Mindy4"
                     /note="MINDY lysine 48 deubiquitinase 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:312365"
                     /db_xref="RGD:1562590"
     CDS             140..2614
                     /gene="Mindy4"
                     /codon_start=1
                     /product="probable ubiquitin carboxyl-terminal hydrolase
                     MINDY-4 isoform X1"
                     /protein_id="XP_038964608.1"
                     /db_xref="GeneID:312365"
                     /db_xref="RGD:1562590"
                     /translation="MDSLYVEEVAASLVREFLSRKGLNKTFMTMDQERPRCELSINSR
                     NDLRRVLHLEFLYKENKTKEKPLKTNLELITRYFLDHFGNTDSTESQEAPIPAIPIPK
                     KNSKLPLRYPEATLVNIYDLSDEDTGRRTSWSETGKARHDNLDGDIFGNFMSSKKNPY
                     KSKPAHMVLGDSLPLVPAWEKVDQLHSSEPGIDMKRTVERTRPKSGLIVRGMMAGPVA
                     SSSQDSFRKRSLRRSSTLSRKLQAPEESQQQSEPFVHTPVCPGPQEVSASSSDSFSRS
                     PLGQLNELSIEKPNATPSSQGPCQRDRPRLRSISEDSPLGYSHTEIITTPLRLDLPDG
                     NSRMPQERLERAFKRQGGQPPSLRFKVMETSLLSQTLIPSLEGKSGKLCAKKCHFHQV
                     FMPLGRWRRRSGVLTRGKVSWCLTGRVISQTPCSWVGEAHPAGLRLHMWLSPEDVEDE
                     LIKEDIVLFPPPSMLKLLTVSKPIDLSLAKEIKTLLFGSTFCCFSEEWKLQNFSFNDI
                     ASLKYGIVQNKGGPCGVLAAVQGCVLQKLLFEGDNRINSNLQLQPSDAQRTRCLALAI
                     ADILWRAGGKEQAVVALASGTPHFSPTGKYKADGVLETLTLYSLTSSEDLVTFLQQSV
                     HQFEAGPYGCILLTLSAILSRSLELVRQDFDVPTSHLIGAHGYCTQELVNLLLTGRAV
                     SNVFNDVVELDSGDGNITLLRGIEARSDIGFLSLFEHYNVCQVGCFLKTPRFPIWVVC
                     SESHFSILFSLQPELLCDWKSERLFDLYYYDGLANQQEEIRLTVDTTKTAPEDNCSDL
                     VPPLELCIRTKWKGASVNWNGSDPIL"
ORIGIN      
        1 ctggtttccc aggaagggga ggagttcttc ctggcgcgga tgccaccgtc gctagggcaa
       61 cgccgcttta ctgggcccaa cggattacgc ggcctggggg tgcaggcagc cgcgtggcct
      121 cgtgggcagc gctagcagca tggacagtct gtacgtggag gaggtggccg cctccctggt
      181 cagggagttt cttagcagaa agggtttgaa caagacgttc atgaccatgg atcaggagcg
      241 cccccgctgt gagctgagca tcaacagcag gaatgacctc cgcagagttc tacatctgga
      301 gtttctctac aaggagaaca agacaaaaga aaagcctctg aaaacaaacc tggaactcat
      361 taccagatac tttctggatc attttggaaa tacagacagc actgaaagtc aggaagcccc
      421 gatccctgca atccctattc caaagaaaaa cagcaaattg cctttgcgat acccagaggc
      481 cacactggtg aatatatatg acctttcaga tgaagacaca ggaagacgga catcatggtc
      541 agagacaggc aaagccaggc atgacaatct ggatggggac atatttggta atttcatgtc
      601 ttcaaaaaaa aacccataca aaagtaagcc tgcgcacatg gtcctgggtg acagcctccc
      661 tttggttcct gcgtgggaga aggtggacca gcttcactca tcagagcctg gcatagatat
      721 gaagaggaca gtggagagga ccaggccgaa gtctggcctg attgtccgag gcatgatggc
      781 tgggcctgtc gccagctcct cgcaggactc tttccgcaaa cgctctctgc gacggtcctc
      841 gactttgagc aggaagctcc aagccccaga ggagagccag cagcagtccg agccatttgt
      901 tcacacccca gtctgtccag gaccacagga ggtctctgct tctagcagtg actccttctc
      961 caggagtcct ctgggtcagc tgaatgaact gtctatagag aagccaaatg ctactcctag
     1021 cagccaaggg ccgtgccaga gggacaggcc caggctaaga agtatttcag aggacagccc
     1081 actggggtac agccacacag aaatcatcac gacacctttg aggctggact tgcctgacgg
     1141 gaattccagg atgccccagg aacggctaga aagagcattc aagcggcaag gcggccagcc
     1201 cccgtctctc aggttcaagg ttatggagac atccttgctg tcccagactc tcataccatc
     1261 cttggaaggc aagtctggga agctttgtgc taagaagtgc catttccatc aagtcttcat
     1321 gcccctgggg aggtggagaa ggaggagtgg agtcctcact agaggaaaag tcagttggtg
     1381 tctgacagga cgggtgataa gccagacgcc ctgcagctgg gtaggtgagg ctcatccggc
     1441 tgggctgcgt ctgcatatgt ggctctctcc agaggatgtt gaagatgaac tgataaagga
     1501 agacattgtc ctgttcccac ctccgtcaat gctcaagctt ctaactgtgt ccaagccaat
     1561 tgacctctct ctggctaagg agataaagac ccttctgttc ggctctacct tttgctgctt
     1621 cagtgaagaa tggaaactcc agaacttttc cttcaatgac attgcctcgt taaaatacgg
     1681 cattgtgcag aacaagggtg gtccctgtgg ggttctggca gcagttcaag gctgtgtgct
     1741 tcagaaactc ctgtttgaag gagataacag aatcaactct aatctccagc tgcagccctc
     1801 agatgcccag aggactcgct gccttgccct ggccattgca gacatcctgt ggcgagctgg
     1861 aggcaaagag caagccgtgg ttgcactggc ttcaggaaca ccgcacttca gtccaacagg
     1921 gaaatacaaa gcagacggag tcttagaaac actcacactg tatagtttga ccagctctga
     1981 ggacctggtg acttttctcc agcagagcgt tcatcagttc gaagcgggac cctacggttg
     2041 catcctgctc accttgtctg ccatcttgtc cagatcccta gagcttgtcc gccaggactt
     2101 tgatgtcccc accagccatc tcattggagc tcacggatac tgcacacagg aacttgtcaa
     2161 tcttctcctg accgggagag ccgtgtctaa tgttttcaat gatgtagtgg agctggactc
     2221 gggcgatggg aacatcacgc ttctccgagg cattgaggca cgcagtgaca tcggtttctt
     2281 atctctcttt gaacactaca atgtgtgcca ggttggctgc ttcctgaaga ccccaaggtt
     2341 ccccatctgg gtggtctgca gtgagagcca cttcagcatc ctcttcagcc tacagccaga
     2401 gctcttgtgc gactggaagt ctgagcggct ctttgacctg tattattatg atggcttggc
     2461 caaccagcag gaggagatac ggctgactgt tgataccacc aagactgccc cagaggacaa
     2521 ctgcagtgac cttgtccctc ctcttgagct ctgtatcaga accaagtgga agggggcatc
     2581 tgtgaactgg aatggctcag accccatcct gtgacccttg gatgcatgga gttctatggc
     2641 ttcagcactc atcactggga tgacccctgg accccaggtt ttagggtcat gtctcttaga
     2701 ggagtcaccc tgccagagtt tgcatggcca cagaggcatg tggagtcttc cagttccttc
     2761 cataaagggc tgtggtaggg tcctgtgcac tgttgatgtc cctcctggcc cacctgtgac
     2821 tgccaaagac aggaaggagg ccaccagaga ctctgctgcc tttcgtttgc atccttcttg
     2881 gatagccctc tctctaaggc ttctggtgtc actggccttg gggactctgg agccttgtta
     2941 ctgcagcttc cataaagcaa cagtcaagcc tatgactagg gccaagactt tgtggttcat
     3001 tggtgtgagt ggaacacagg tctgctctca gcatggctaa gatgggacag acgggtggag
     3061 acccaggacc ccgactggca aagcatctcc tagccaagat ctgaggacaa accctgccct
     3121 ttgtcccaga gttgtcctcg actgggtccc caggtctctc agttttccac aggagcagca
     3181 tagtccaaga tacaagctac caagagcagc caaaggtctg gagagcccaa ttcagggaag
     3241 acctggctgt cttgtgaagc cacatgagga tggggtgggc aagggtagaa cgctacccag
     3301 gaagtgactt cttgcccaga caagcaaaaa tgatggagac aagcagaggg atcaggtgtc
     3361 aacttccctg tggctatggg gagaactggc tgctgtggga gtgggcaggg ctttagatga
     3421 actcacattg cagaataaga gaggttggat gggaagatgg tatgtcacca catgttgtac
     3481 atcctctggc ttttgtcatg aagggtgata aaacagcaat gggtagctag ggaaggtgct
     3541 ggctggttca gagccagagt ccagggctgc ttgcagcagt tacaagaggt accctagggg
     3601 taaagctcca gacctcagag tccccgccac atgactatcc aactaggata cctcctcccc
     3661 tagcctggca gcccatggag tttaggagcc tagctgctct aggctgtgtc ctctgtagta
     3721 agaggtctcc tcgctgtaag aagaaacccc ctcctttaag gagttaggga tgtagtgggg
     3781 gacaactaca gagcttgtct tgtgttccta gggcacatgc cgtgtcccaa ctgcagattt
     3841 ttgcagaggc agggaggagc caactatgcc ataggagaag cagagggcgg gaagggctgt
     3901 gtcctgcccc aggctccctg ggggcttact gtgtaaactt tagtggccat tcacagcagg
     3961 ttcccagtag aaatgcttcc tatatctcct tgaaatgttt atgcatttgt tttccttggc
     4021 cagagatgga cagctgcaga gtgcctggct gaggaagttg gtttccctgc aatgaccttg
     4081 tttatcggcc tggggaggaa aagtatcttt tcaatgaaac ccacttagtc tccttgccag
     4141 gggctctttg gcagggctag agaaaacaaa caattcccag cattactgca gaaggttgac
     4201 ccaacaaagc acagagcttg ctcttctcgg agccctgatg cagatacaca agtactacgc
     4261 tgtggagagg aaggtaggca gagatgggta taactgctcc caggctttga agccttttca
     4321 gtaacactct tagggctgta ggaccgaaac ccctcctcac aaggggacag tgttctctgt
     4381 gggtgcagtg gtaggcgtca cagccctctc ccgaactgca ttaaaaacat taatgctcac
     4441 atacatatgt gctaagggcc tgtacttttc tgtctctgtt actctaagtg gagacaaatt
     4501 cctactcttt ttctgttgac tttgctttct ctttagcatt tgcttcttga tctagagagg
     4561 gacacacagg ccgtgactgt tgatttttga cattatgcag cgtgtgtgga acctgtgtaa
     4621 tggccactta actccaaact ctcctgagga aagtcctccc ttcccctgag atgttcatct
     4681 gaacaggtgc cggggcagcc tgttttcact tcccagcctt gctccaggag acctccagac
     4741 ccagaaccac ccctggctct ttcagagaag agggtcagcc agacagttgt ttgctgtttt
     4801 gactttgtat tgattctttt cgagtttccc atcatgcacc tcagtcctgc tcatctcctc
     4861 atagccatcc tttgcccttg caacctcccc agccaaacaa aaaacaaaac agccccctcc
     4921 cccccaagca aagcagagaa aacatctcat tgtagaagct gtatcatgtc actgtgtgtc
     4981 ccctttggtc cacgcacctt cactggtaaa tgttcattgc aatgagtcat tggtctggtt
     5041 tgaggtctct ggcttctgtg acaccattaa tattgaatcc tcactggtac ttcttccagt
     5101 tatcctgttg ttgccctgtg tcatggagat cctgcagctt tgacagcaga accgaccctt
     5161 ttacttgtcc cagctgctca cagatgatgt agattttggg gtgggccaac tcagagccct
     5221 ggatctgggc ctgtgaggta gctgagttgg tcagcccttg gctgtctctt atcagcacca
     5281 ccagggtgag ctctccagca ctgccttgtc taggccaccc catgcctcca ttgcaggaag
     5341 caatgttaac tctcttgctc tcatgcccat gctctcacct gcacccacac ctccagagcc
     5401 agctccactg tgctgcccag tcaaggttca ggacccactc tcccaagtgc tgcagcctga
     5461 aaggggcaag gacagctctt ttgctctcat gacacccctc ccccctcaac cggggtcagt
     5521 tcctcctact gccacaggtg gtgggggatg agagggctaa gggcacccct gcacccacgc
     5581 caccttaatg cagaccaatg gcaggccaac tatgcctctc tcacagctca cactcttggg
     5641 gtgagctcac ccacacccct gtactgccca gtgaagatgc aggacctact ctcctgagtg
     5701 ctgagtgctg ggctagctcc actgggctca gtcttcccaa ttgctggagg tggcaagagg
     5761 tgtggggatc acctctccca aaccaccact accagggccc actccatggt gctgcctggg
     5821 tgaggtacag ggcccctttc actgtcagtg agatgaaacc agctctccag agtaccacag
     5881 ccagtgaggg atggagccag ctctgtacag cccctggacg tccacatggt ccccagtagc
     5941 tgcccctacc acagatgggt ccccatgttc tctagtggta atatgagcca tagacatcaa
     6001 cactgacccc tgcagctgca tagctacaga tgcagacatg gcccatggct ccgggtggca
     6061 gggctggtca ctcgcaatag gatactcctc tctacccccc agtcctcagt tccatctctc
     6121 ttcatgatgc acactgtggt ggctttgaca tctgaccacc acatatttgc accttgtggt
     6181 gactcctgct gctgtctgac cacacacctg acaagctccc aggtgacagt ctccatcagc
     6241 gttatgtggt gtggtagcaa agaggtgcct atgccgtgct ccagagggca ggagctagac
     6301 aatcctgacc tgtatgctgc ggccgttcta gaggctgctc tttgccacca gtaggcacac
     6361 agagagttct ggctccttcg tttctcagga tgttttatgt gggggagtcc tccctcatct
     6421 acttagggca ggccagctct tcagtgggga cagcctctct cccattcctt gtgtggaaca
     6481 ccaagtcttt cctccatgga atccatttgc gagccatgtg aagcccgtgt gtccttccgt
     6541 gcacacagga ttagcacaca caggatcagc tctgagtgct ctgtgccttg gcttttgcca
     6601 taactttacc caggagaccc agccaccatt ccttccatca ggagtgggcg ggttgtccac
     6661 ttgggcacat tagttttttc tgtcttgctt ttcaagacag tttctctgct tagatagagt
     6721 ttctctcttt agccctggct gtcctggaac tcgctctgta gatctggctt accttggact
     6781 cggagatcca cctgcctctg cctcctgagt gctgagatta aaggtgtgtg ctgtcactgc
     6841 ctgtctgtgt gtattgtttt tctagggata aaataagtgg gtatcttctg tgtcacattg
     6901 cctttcccaa cctgtattaa aattacaaac gtccacatac atttgtgtta aagattttgt
     6961 agttctctgt tgatctactt ggagatagac tctgaagtcc actccaagct ttcaagaaat
     7021 tgtcctggga actgccttac ttggctttag gagcaaagac acagcccttt cagaccttgc
     7081 atctgatgcc tctatacaag acacccttgc taattgtagg cccaaattgc cctatggcca
     7141 gagggtaggg atggccagct tcggaggaca ttagctctat tcccttgggg caccacacaa
     7201 agcagtttcc aggacagcag gattcctgtc ggtcagaact aggccagggc ttagagatat
     7261 cctaaggtaa gggtgcactc agactttgtc cgattacccc cagtgtgtct gtgtcacagg
     7321 aatggcacca gctctgacca agggccagca gggaccctca gtctgctgag agtgaaaaga
     7381 cctagtctcc gtacgtactc ggctctgcca agcaggcggc agaggacttt tcctggttct
     7441 ggatgctaac ctcactgtga ctcagagtgg ccctcagagc aacagcatac ttgcagtttc
     7501 tccttcaggg tccatctcat cccccagccc ccaaccagaa tctgcctctt aaaatggtgg
     7561 gacagtttta gtctggaatg ctctggtaca gagcttgtgg ttttcataaa gtctagagag
     7621 atacacagga aactcaacgt gtaggtctga ggaggaagct gcctcagcat ctgcctgacc
     7681 cagtggcccg aagcacttga cttaagtgtg ccgagctttc gtgtctcgtg tgtgaagctg
     7741 tagcctcaca gcattctaag ataaagtgag gtcacacaca gacgcactta gaataggacc
     7801 cagcaataga tgctgcttgc caatctctcc aatgaacaaa gtagaaacgt ctccaagctt
     7861 ctaccctggg ccttaaagca caagtgaata attgaatgaa tgatcattcc agactaaaga
     7921 gcagtgtgag cagacagaca cggccgtcac aatgtctgct tcatcctgga aaaacagagc
     7981 gtgttctcag aggaccattg tcaggagcca agagcagaag aagaccccat ataggccaga
     8041 gtggggcact tcccttggaa aggggatttg ctcaaagttc tgtcagatct ctgtctcttt
     8101 aggtgagggg aaaagcaggg ggctgcgggt gggaaggcag cccaggtaag gagcacaggc
     8161 atgggtaagg tggtaatgtc ctgtgcaggg ccctaacaca gaaccctcaa aggatcctca
     8221 gagttatagg aggcaatcaa actaggctgc caaatctctt ggcaggcatt tggctccacc
     8281 caccagagct ctccctcctc cctaatcctc atggggctgt gagaggtgtg attatcaggc
     8341 aaaaatgcca agcatgcatc gtgataatga agactgcttc atgcacactg cagcccacag
     8401 gatgggggtt ggcggataaa tggcagagcc aggcctaatg tggtcagggc ttttgtgtta
     8461 agcagggtcc cgagcttcta gtagatctag cagttgcaga gagggttcag gaccccacca
     8521 ggcaggctga gggctgagtg accattgcct gcaagtggcc tcactgtgca ctctctcttg
     8581 tgcccagtcc cacaaatacc tgttcttctc caagagagtc agtaaaggcc ctctctgtct
     8641 ctgcagatgg gggaactgag gcacttcttt tgtggcaggc ttttgcaggc cagaccacca
     8701 ggtgatacct gaacctgctt cttcctgtgt tcttcctgcc cccct
//
