LOCUS       XM_039102353            3073 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MINDY lysine 48 deubiquitinase 1
            (Mindy1), transcript variant X3, mRNA.
ACCESSION   XM_039102353
VERSION     XM_039102353.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039102353.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3073
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3073
                     /gene="Mindy1"
                     /gene_synonym="Fam63a"
                     /note="MINDY lysine 48 deubiquitinase 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 32 ESTs, 1 long SRA read, 1 Protein, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 113 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:310665"
                     /db_xref="RGD:1559660"
     CDS             1220..2641
                     /gene="Mindy1"
                     /gene_synonym="Fam63a"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase MINDY-1
                     isoform X2"
                     /protein_id="XP_038958281.1"
                     /db_xref="GeneID:310665"
                     /db_xref="RGD:1559660"
                     /translation="MEQPQAECPAPSKTNSAETVESEKHEALSGPEKHPQDKDGADAA
                     PEKHPQDKDGADAHGEAGKQKSGDQTLPPVQDGGNLECPPPEASSSPPGPACGIPSEV
                     ETTEACSRPQQLPQSPRIQQPDLDFYCVKWIPWKGERTPIITQSSNGPCPLLAIMNIL
                     FLQWKVKLPPQKEVITSDELLTHLGNCLLSIKPQEKSEGLQLNFQQNVGDAMTVLPKL
                     ATGLDVNVRFTGVSDFEYTPECSVFDLLGVPLYHGWLVDPQSPEAVSAVGKLSYNQLV
                     EKIIICKHSSDSNLVTEGLIAEQFLETTAAQLTYHGLCELTATAKEDELSVFFRNNHF
                     STMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKSHGAEG
                     GSGSPEKQLQVDQQQQQPQGMLGLSDLELAQQLQQEEYQQQQAVQPVRTRAPSSPGRG
                     ATSGRPAGERRQRSKTESDCVLL"
ORIGIN      
        1 gcaaatatct cctcatacgg ttcttggagt gttgcaaccg tgactttgct tcctgggtct
       61 ctgttgcaac tgttctctca gctttcggag ttgattgaag ccttatcctt tggccgtcac
      121 atcaatagag tttaaagaag ccttcagaac attttcctgc ttctcaggca agtgagaaga
      181 ggcagaagag cgtcttcctc accctcgacc agctccagag tagaggctgc ggccggccgg
      241 catccaggga ggtctaatca gctgctgctg tcccgccctg ctcctccggg ctctgccagg
      301 ccgcctgctt ttcccggttc tcaccggaga ggcacacgcg ctccgtccct tccagcggca
      361 ggcggaggga agagaaaggg tctgttgttt ttctctcttc ctttctgcgg ctcaccgggc
      421 tgctgaccca ctccgacagc cctgatggaa atcctcggtg gctgagcagg cccctcctcc
      481 tccagggact gcgtccttgg ctaatttgtc tttgtccgga cctgggggaa agagggagag
      541 agagaagaaa aagaaaaccc acaaacttcc tttgaaagcc agtttgtagg cagggcctgg
      601 agcgcacgcc ggaggctcgc tcacttggga atcttaaaga ctctgaaagc cgtgggggat
      661 cgcctaggct gagctctgct tgtcctcgcc cccaaccctg ctctgacacc ccgggtgttg
      721 agtgtgagtc cggaagtggc cgcgacccag gctggacgcc gcgagagtaa acccgtgtca
      781 agccgtgtaa gctccggggc tgacagctgg gaggcagctg gcgcagtcgg agccccccaa
      841 cgatgtcccc tcctcccgcg tcgaaccgcc agagttgagt cctctcctag tgccggaacc
      901 tcatccatct ctttgaggga agaaaccagt tccacccagt atctttcatc ctttccaaga
      961 ctggaaacct aagtccaggt agccacatct ggtcacagca agtcagaggt ttggaatcag
     1021 ctgatacctg tttatactga gaaaaactta atctagagcc agagtggcct accctgttca
     1081 ctttgtcttt tcttgtttcc tttgctctat aattcaatga ccttattggc caggtccttt
     1141 tgcacactag aatagcccta ggcaaggtct ctgaggtcac agagcaactt cattcccctc
     1201 agctgactct gtacccacta tggaacaacc tcaggctgag tgcccagccc ccagtaagac
     1261 caacagtgca gaaactgttg aatctgaaaa gcacgaggcc ctgtctggac cagaaaagca
     1321 tcctcaggac aaggacggtg cagatgctgc accagaaaag catcctcagg acaaggacgg
     1381 tgcagatgct catggggaag caggaaaaca gaagtcagga gaccaaactt tgccaccagt
     1441 ccaggatggg ggaaatcttg agtgtcctcc tcctgaagct agttcaagtc ctcctgggcc
     1501 agcttgtggg ataccatctg aggtagagac aacagaggca tgttccaggc cgcagcagct
     1561 tccccagtcc cccaggatcc aacagcctga tctagatttc tactgtgtca agtggatccc
     1621 ctggaaggga gaacggaccc ccatcatcac ccagagcagc aatggtcctt gtcctctcct
     1681 ggccatcatg aacatcctct ttctgcagtg gaaggtaaag ctgccgcctc agaaggaagt
     1741 gatcacatca gacgagctcc tgacacatct tggaaactgc cttctgtcca tcaaacccca
     1801 agagaagtct gagggccttc aacttaactt tcagcagaat gtgggcgatg caatgacggt
     1861 gctccctaaa ctggccacag gtctggacgt caatgtgcga ttcacaggcg tctcagactt
     1921 cgagtacaca ccggaatgca gcgtctttga cttgttggga gtacctctat accatggctg
     1981 gctcgtggat ccacagagtc ctgaggctgt gagtgctgtt gggaaactga gttataacca
     2041 gctagtagag aagatcatca tctgtaaaca ctctagtgac tccaacctcg tgacagaagg
     2101 cttgattgcg gagcagttcc tggagaccac cgcagctcag ctgacttacc atggcctgtg
     2161 cgagctcaca gccactgcca aggaagacga acttagcgtc ttttttcgaa acaaccactt
     2221 tagcacgatg actaagcaca agagtcacct gtacctactg gtcactgacc aaggttttct
     2281 acaggaggag caggtggtgt gggagagctt gcataacgtg gatggggaca gctgcttttg
     2341 tgactctgac ttccacctaa gtcattccct aggcaaaagc catggagcag aaggtgggag
     2401 tggctctcca gagaagcaac tgcaggtaga ccagcagcag cagcagccac agggcatgct
     2461 gggtctcagt gacctggaac tggcccagca acttcaacaa gaagagtacc agcaacagca
     2521 agcagttcaa cctgtgcgga ccagggcccc ttcatccccg ggtagaggag ccacatctgg
     2581 acgcccagct ggggagcgga ggcagaggtc gaagactgag tcagactgtg ttctgctctg
     2641 actccgcccc atacagcctg ccccgcccct tctttcagag gccttgaccg gcaggacccc
     2701 gccccacctc aatccttgag gcatacagga taacctgtat gcgctattgg ggatcagaac
     2761 agtgggtgcc aagatcagac ttggtaccgt ctttgccctt gtactgctat cttctcttcc
     2821 tctcatccag ggccacatgg gtatgggttg ggtgaagatc tctggttccc agtccccttt
     2881 cctggattag tcacatggat atgccgaccc aggctgctaa gtgagacacc catctcctgt
     2941 gtccttgcct gtctggttgt tcctgggctt aaccgcacag gcctgtcttt gttttagggt
     3001 ttggtttggg tttatatctt tattattttt aatgccttcc taggggtttg gaaataaaac
     3061 tcctttcctg aga
//
