LOCUS       XM_039103882            5356 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mitoguardin 1 (Miga1), transcript
            variant X1, mRNA.
ACCESSION   XM_039103882
VERSION     XM_039103882.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103882.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5356
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5356
                     /gene="Miga1"
                     /note="mitoguardin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 32 ESTs, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 33 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362058"
                     /db_xref="RGD:1559958"
     CDS             375..2210
                     /gene="Miga1"
                     /codon_start=1
                     /product="mitoguardin 1 isoform X1"
                     /protein_id="XP_038959810.1"
                     /db_xref="GeneID:362058"
                     /db_xref="RGD:1559958"
                     /translation="MSGETVSRSQFSLKTCAIRVFALPVSWYYSLSQIKFPPAAKKLF
                     MVTAVSAVSVIFLAHHFKRRRGKQKGKVLPWEPEHLLLEHTRRAASDKGSSCSSSRQN
                     LTLSLSSTKDKGSQSCNYPNGGLLSRYSGSAQSLGSVQSVNSCHSCACGNSNSWDKAD
                     DDDVRLVNIPVTTPENLYLMGMELFEEALHRWEQALTFRSRQAEDEACSSVKLGAGDA
                     IAEESVDVRTSAEEQASDIISTEFIHKLEALLQRAYRLQEEFEAALGGSDPDSLANDT
                     DKDTDLSVRETVDEFGLPDTANIDSADLFASATELAEHREAQQALSLESFCRCPFYEE
                     AMHLVEEGKIHSRVLRTEMLECLGDSDFLAKLHCIRQAFQLILAEADNRSFLAESGRK
                     ILSALIVKARKNPKKFQDVFDEMIYFLEQTDHWDSTEMELAARGVKNLNFYDVVLDFI
                     LMDSFEDLENPPTSIQSVVTNHWLSASFKETAVASSCWSVLKQKRQQMKQISDGFFAH
                     FYAICEHISPVLAWGFLGPRNSLYDLCCFFKNQVLFFLKDIFDFEKVRYSSIDTLAED
                     LTHLLIRRTELLVTCLGADALRQATTCTSGHSHAVPTALLEARVQ"
ORIGIN      
        1 gcgggagcgg cctcgcacgt agcccctcac gcagtccgcc cgcggcccct ccacttttcc
       61 tacctttgcg tcgtgacccc ggaaggactc cgcctcccac agccagaggc tgctcggtgc
      121 gggctgcggc ttggaagagg aggaggagca gacagggtct cagtacgtat ctctgtctgg
      181 cccggaactt gccatgtagg ccacactgac cgcaaactca cagagatctg cctcccaaga
      241 actggaagca aaggcataca gcgcccgcca taccagcaag aatttcactt cgcatgtctc
      301 atggataagg cagctagaaa tccctgtggc tgatcaattt ctgtttcact gaattaagat
      361 tagacagaga cgacatgtcc ggagagacag tcagcagatc acagttctcc ttgaagacat
      421 gtgcaattag agtgtttgcc ctccctgtgt cttggtacta ttctctctcc cagatcaagt
      481 ttcccccagc agctaagaag ttgtttatgg taaccgcagt aagtgctgtg tctgtgattt
      541 ttctggctca ccacttcaaa agacgacggg gaaaacagaa aggaaaggtg ctgccctggg
      601 agccagagca cctgctcctt gagcacacta ggagagcagc gtcagacaaa ggttcgagct
      661 gttccagtag caggcagaac ttgaccttgt cattaagttc caccaaagac aaagggtctc
      721 agtcttgcaa ctacccgaat ggaggacttc tcagcagata ctcgggttct gcccagagct
      781 tgggctctgt ccagagtgtt aactcctgtc atagttgtgc ttgtggaaat tctaattcct
      841 gggacaaagc agatgatgat gacgtcagac ttgttaacat tcctgtgacc actcctgaga
      901 acttgtactt gatgggcatg gaactatttg aagaggcgtt acatcgatgg gagcaagcgc
      961 tgacttttcg aagtaggcag gcggaagacg aagcctgcag ctctgttaaa ctgggagccg
     1021 gagatgccat tgcggaagaa agtgtggatg taaggacgtc tgctgaagag caggcctcag
     1081 acatcattag cacggagttc atccacaaac tggaagctct gctgcagaga gcataccggc
     1141 tccaagagga gtttgaagct gccctcgggg ggtccgaccc ggattccctt gcgaatgaca
     1201 ctgacaaaga cacagatctg agcgtgaggg agactgtgga cgagtttggc ctgccagaca
     1261 cagcgaacat tgactcggca gatctctttg cttcagcaac agagcttgca gagcacagag
     1321 aagcacagca agccctcagc ctggagtctt tttgtcgctg ccctttttac gaagaagcta
     1381 tgcatctggt ggaagaaggg aaaattcact ccagagtact gagaaccgaa atgctggagt
     1441 gcctgggaga cagtgatttt ctcgccaagc ttcactgtat tcggcaagct tttcagctaa
     1501 tccttgcaga agcagacaac aggtcgttcc ttgctgaaag tggaaggaaa attttgtctg
     1561 ctttaattgt gaaagcccgg aagaatccaa agaaatttca agatgttttt gatgaaatga
     1621 tctatttttt agagcagact gatcactggg atagtaccga gatggaactt gctgccagag
     1681 gggtgaaaaa cctaaatttc tatgacgtgg ttctggattt tatattgatg gactcctttg
     1741 aagatttaga aaacccgcca acatccatac agagtgtagt gaccaaccac tggctcagtg
     1801 cctccttcaa agaaaccgct gtggcttcaa gttgttggtc agtgctgaaa cagaaaaggc
     1861 aacagatgaa gcagatctca gatggattct tcgcccattt ttacgccatt tgtgagcata
     1921 taagccctgt cttagcctgg ggcttcttgg gtcctagaaa ttctctctat gacttatgtt
     1981 gcttctttaa gaatcaagtt cttttctttc tcaaagacat ctttgacttt gagaaggtgc
     2041 gctattcgag catagacacg ctggcggagg acctcacaca cttactcatc cgccgcacgg
     2101 aactgctggt cacctgtctt ggtgcagatg ccctgaggca ggccactact tgtaccagtg
     2161 gacactccca tgccgtgccc actgcgctgt tagaagccag agtacagtaa gtaccgggag
     2221 agctttgaga atgccgccag tgcttcaggg taatcaccga ctgcagcggt gcctcggaat
     2281 ctacaggacc gatgacatgg actcagggag gaagaaagtt tccacgaacg ggcgactgtc
     2341 ctgcacttag cagaaagttt gcattgaacc catggaaagt atccagagcg actttttaat
     2401 aatctttagg taatttaagt tgtgaagtgc tgcataagtt gtgactgttg cttgagttaa
     2461 agccaatgct ataggagttc attgtcttca cacaatctgt aatgtccagt accgtcctca
     2521 aaacgtgtct tgatgctttg ctccttgaaa acactggccc aaggcgattg tgtttgtgta
     2581 atctctgact tctggtgtca acatacttac ctttgcctga aatgtattcc taaccttagt
     2641 tacttctatg tttaatagaa tttagacaat agaggtattt aactgtgctg tgtacctata
     2701 gcttgtatat ttgctaatgt atttgaacca agaagttatc acaaaggact ggtgcactga
     2761 gaggaagagt gtaatgagca cgccttgggg aggaaactgg tgggttccag agtacttact
     2821 gttgccctgt aagtcataac acactgaggt acttttatct catttcccct caaatgaata
     2881 ttaaatttga aaatataatt tatttaccaa gaaaaataat taaaaatgta tcctctttta
     2941 aatgtaactg tgaggctggc ttaaagtatt aaactttata gaataagata atttcctctt
     3001 tcctttcaca aaacaagctg ttaatgcctc acgcagtgag tatcacatta gaagttggtc
     3061 gtgttatgca taaattttaa aagtactcat actttgagct tatgttttaa agggattttt
     3121 ctcttagatg ttgaacaaat attttaaatg ctatgggggt gtattttatg tccttatgat
     3181 aaatatatga acaacaggct gttataagta acctccaaag tgtattatat attttcaagg
     3241 tctcattact ttggctttaa gatcatgtgc catgttttca ctagtggatt agattcactg
     3301 acttgttatc ctaaagtggg ctgcattgat tttaagagtg aattatacag aaggatgtga
     3361 aatgagtttt ttaaataatt catttttaga ttaaagtgcc tagattaagg ttaatgatga
     3421 gaaaataaaa ggtaaaaagt ttaatttttt aagattttag ctgtgtacgt acatcacagt
     3481 tatgtaaatt aatacaagag tcggattgag acccgtgcca ttagtgtgtc aggctcttag
     3541 gccgtacgcc tgtgccctcg gtgcacaggg ccttgccttc tccccttcac ccttcatttc
     3601 ccctcaggcc cagctctgcc tgaggacaaa gtgcactgtg ccccacttcc cttcctactt
     3661 tcacatcagc tgttttcacc tatgagatgt caccgaatgt gacacacatg tgcgtgcctt
     3721 cctgttacca cataagcaag acagttgtgg attatattca tttactcatt ggagatctaa
     3781 gtgtgtgtcc tgtggttttg taaacagaga tgtaagtgaa ctgtctttgg gggatcctcc
     3841 ctgagatagt gtggaagaat tgcactgaaa cagtgctgca gcaacatgag gtgaccttgg
     3901 gggtgacctt ccaaaaggtg tccgatctct gtctttacat ttcagttagt aaacaagctg
     3961 tccatcttca aggaagggtt ggtttgtcag gctcagtgct aattaactag aatagtaaca
     4021 agatagtttg tggcctttga cgagagagat taagaatgac caaataaaat ttgggagcaa
     4081 taaatgtaga agaaaaatct ttgattgggg gggggggggg agtcaggaaa gcttaacttt
     4141 ttaaaggaaa atgtcttttt aaaaagaaca tctctggctc tgattgttga aaatacttag
     4201 gagagacaag ttatttgcct taaaagtaga cacagaagca atgctttaac agataaaact
     4261 caaatgaggc tcggccctgt tagggagaaa aggaagggca gcctagtggg ctcacggtgt
     4321 cactgaagac aggcgcatgt gcaagatgtt cgagggcgta gggttgatcc tgagaacgta
     4381 gctggctcct cttttctgga agaacagaga caaattcagt tgattatttc cctttatttg
     4441 tttgtttctc ttatgttctt gttcaattaa aaagggaatt gtttcttccc aaaagtcaac
     4501 aatatgttca tggaatggca aaacaaaatt gtcttttttt ccaatatgcc aaattttctg
     4561 ttctgtgaag gtcagctcca aagagcttta tctgtctcct gaattgttgt caccatgatt
     4621 ctattgattt gagagttaac tgactattca aagtatttac aaatgtttct ctgctgtaag
     4681 atgtagcctt tcctactcac ttcccagcag ctagcctagg aatgaggacg gccagaggga
     4741 gggctaaaaa tggtgaacta ctccacacac agcctgctgt gaccagactg ggggctgtgt
     4801 ttataacgct ggtttttatt tttaatatga acatttatta atagttaaca taatgaattg
     4861 ggctgtaatt ttaaactatg agaattaggc tggattaaaa tctgtgaatt ttaagttaag
     4921 aaacatgtat gtaaaagaag tgtgataatg gaactgtgaa ctagtttgtc cttaatgact
     4981 gtgtcgtgtc acggtctcct tgactggcct cagcatatct gttacttcac tgtaaggacg
     5041 gaactcatta atctgtggaa aagtaaatca ccacagcggc agacaacagc actgtccctc
     5101 acatgcactg gagtgagcat gtgttctgtt cccgccaagt aaaccagtgc tggtgtccta
     5161 gtgctgtgct ggctgcatca gtgacgcttt ccataatgtg cgacacaggt gcctcagaag
     5221 gcctgtttcc cacgtgaggc cacagcagac ggaggcagag agaaagcaaa cacccctagg
     5281 aaggctgaaa tcaagtgtag aatactacca aatatctgtg ctaccgtgga ataaagatag
     5341 cattgtgatg aataaa
//
