LOCUS       NM_001169116            4163 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus mitotic deacetylase associated SANT domain
            protein (Mideas), mRNA.
ACCESSION   NM_001169116 XM_001057760 XM_001057823 XM_001057875 XM_234404
VERSION     NM_001169116.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4163)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Sep 25, 2014 this sequence version replaced NM_001169116.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.27498.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-517               JAXUCZ010000006.1  109559796-109560312 c
            518-2182            JAXUCZ010000006.1  109539236-109540900 c
            2183-2482           JAXUCZ010000006.1  109537931-109538230 c
            2483-2828           JAXUCZ010000006.1  109528325-109528670 c
            2829-2895           JAXUCZ010000006.1  109526508-109526574 c
            2896-3038           JAXUCZ010000006.1  109525891-109526033 c
            3039-3142           JAXUCZ010000006.1  109525684-109525787 c
            3143-3218           JAXUCZ010000006.1  109524975-109525050 c
            3219-3307           JAXUCZ010000006.1  109524242-109524330 c
            3308-3457           JAXUCZ010000006.1  109522530-109522679 c
            3458-3670           JAXUCZ010000006.1  109521205-109521417 c
            3671-3867           JAXUCZ010000006.1  109519602-109519798 c
            3868-4163           JAXUCZ010000006.1  109519011-109519306 c
FEATURES             Location/Qualifiers
     source          1..4163
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q31"
     gene            1..4163
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /note="mitotic deacetylase associated SANT domain protein"
                     /db_xref="GeneID:314306"
                     /db_xref="RGD:1306119"
     exon            1..517
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /inference="alignment:Splign:2.1.0"
     exon            518..2182
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /inference="alignment:Splign:2.1.0"
     CDS             758..4027
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /note="ELM2 and SANT domain-containing protein 1; ELM2 and
                     Myb/SANT-like domain containing 1; ELM2 and Myb/SANT
                     domain containing 1"
                     /codon_start=1
                     /product="mitotic deacetylase-associated SANT domain
                     protein"
                     /protein_id="NP_001162587.1"
                     /db_xref="GeneID:314306"
                     /db_xref="RGD:1306119"
                     /translation="MNLQAQSKAQNKRKRCPYGDQEPAAKEQPPPLQAPPQSLRAKEE
                     QYGPHEGPAGVASTTQPVELSPPNNLALLNSVVYGSERTTAAMLSQQAQVSSVKWPNS
                     VMTPGRGLECGGGAGISDSGWQQQPGQPPPHSTWNHLPLYSGPKGGPHPGVGVSPYYN
                     HAEALKGNKPGGPQLDHYGNAVQPMVPQKMQLEVGRPQAPLNSYHSAKKPPNQTLPLQ
                     PFQLAFGHQVNRQVFRQGPQPSNPTTSFPPQKQQQQQQQQQPPAALPHMQLFENYYPM
                     HQPPSQQHQDFTLAPGGPLGQTHLPHRGMAPYPFPHNPELRKALLQDPASQPVLPQPQ
                     MAFPRRSRRLSKEGILPSNSLDGAGTQPGQEPTSNLFLHHWSLQQPPPGALGQPHSEA
                     LGFPLELRESQLLVDGDRLAPNGREREAPAVGNEEVSRAGGLGDCGQMMRSGVIQSTR
                     RRRRASQEANLLTLAQKAVELASLQDANGSEEKRKSVLASTAKCGVEFSEPASAAKRA
                     REESGMVPLIIPVSVPVRTVGPTEVAQVGGSDEDGKGLEQFPTDHKPSVIVTRRRSTR
                     VPGTDTAAQAEDLNAKLEGEPSMRKPKQRPRPEPLIIPTKAGTFIAPPVYSNITPYQS
                     HLRSPVRLADHPSERSFELPPYTPPPILSPVREGSGLYFNAILSTSNVPAPPPITPKS
                     AHRTLLRSNSSEVTPPVLSVMGEATPVSIEPRINVGTRFQAEIPTMRDRSLAAADPHK
                     ADLVWQPWEHLESSWEKQRQVDDLLTAACSSIFPGAGTNQELALHYLHESRGDILEAL
                     NKLLLKKPLRPHNHPLATYHYTGSDEWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTV
                     AQCVEFYYTYKKQVKIGRNGTLTFGDLDTGAEKSGQEEVEVDVKTSQKFPRVLPPRRE
                     SPSEERLEPKREMKEPKKEGEEEVPDTQEKGEQEEGRERSRRAAAVKATQTLQPTEAA
                     NDVLILRSHEPNAPGSASVQTSEKPREGPGKSRRALPFTEKKKKPEAFNKTQNQENTF
                     PCKKCGRVFYKVKSRSAHMKSHAEQEKKAAALRLKEKEAAAAAAHQQALKEESGEGEK
                     G"
     exon            2183..2482
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /inference="alignment:Splign:2.1.0"
     exon            2483..2828
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /inference="alignment:Splign:2.1.0"
     exon            2829..2895
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /inference="alignment:Splign:2.1.0"
     exon            2896..3038
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /inference="alignment:Splign:2.1.0"
     exon            3039..3142
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /inference="alignment:Splign:2.1.0"
     exon            3143..3218
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /inference="alignment:Splign:2.1.0"
     exon            3219..3307
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /inference="alignment:Splign:2.1.0"
     exon            3308..3457
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /inference="alignment:Splign:2.1.0"
     exon            3458..3670
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /inference="alignment:Splign:2.1.0"
     exon            3671..3867
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /inference="alignment:Splign:2.1.0"
     exon            3868..4163
                     /gene="Mideas"
                     /gene_synonym="Elmsan1; RGD1306119"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctggttcctg ctcgccgccg tgccgcgcgc gccggccagc cactgggcgc tcggagctcc
       61 cagcctcgag ttgtgcaatc ctttgtagca cgccagcgag tcctcctcct tcgctcttgc
      121 ctctcgccct ctctcttttt ttcaagctgt gagctcaacc gatgagtcag agccgtgcaa
      181 tcctgacact gcatcgcagg actgggggtg acacgcaggg agggagagcg ctctcgaggc
      241 ggactgtaag ggcgcggggc gcgccgaggc tgccgagtcg cgagcagcgg gtgacagcac
      301 acacgtcccg cccgggccct gccagcaaac ttccaggctt cgggaagcgc gggcttggct
      361 gaaaccctgc gaacgccgcg gggaagcgac ggcgcctgtt tgtttttaaa atccgggagt
      421 gtgtgcaggc gactgggttc ttcagaggcg acctaaggcg gcggcccgcg gcggaaggaa
      481 ggggcactgc tgaggccgga ggccgagtgg gagctgggct ccaggacctg gtgcagcatc
      541 atgactgggg aagtgtagct gagctcaaga ctctccctag aagaggaagg accagtggac
      601 gtttctcggc tcttgcctga gggctcctga gttttcctct gcccctcttc tgccttccct
      661 ggctactgga ctggggccag gcttccagca ggaccttctc ccaagggatg ggcatctgct
      721 gaaggacgtc tcattgtcag gcttagctgg ccacaccatg aacctccagg cccagtccaa
      781 ggctcagaat aagcgcaagc gttgtcctta tggggaccag gagccagctg ctaaggaaca
      841 gccaccacca ctgcaggctc caccacagtc cctcagagct aaagaggaac agtacggtcc
      901 ccacgaaggt cccgcggggg tcgcctccac cacccagcct gtggagctat ctcctcccaa
      961 caacctggct ctgctgaaca gtgtggtata tggatctgaa cggaccacag cagccatgct
     1021 gtcccagcag gcccaggtca gctcagtaaa gtggcccaac tccgtgatga ctccagggcg
     1081 gggcctggag tgtgggggag gtgcaggcat cagcgacagt ggctggcagc aacaacctgg
     1141 ccagccccca ccccactcca cgtggaatca cctgcccctc tacagtggac ccaaaggggg
     1201 ccctcatcca ggtgtggggg tctctcccta ctataaccac gccgaggcac tgaaggggaa
     1261 caaacctggg ggtccacagc tggatcacta tggaaacgca gtgcagccca tggtgccaca
     1321 gaagatgcag ctggaggtgg ggaggcccca agcgcccttg aactcttatc attcagccaa
     1381 gaaaccccca aaccagacac tgcccttgca acccttccag ctggcatttg gccaccaggt
     1441 gaaccgccag gtcttccggc agggccctca gccctctaac cccaccacct ccttcccgcc
     1501 ccagaagcag cagcagcagc agcagcagca gcagccgccg gcagccctgc cccacatgca
     1561 gctatttgag aactactacc ccatgcatca gccgccttca cagcagcacc aggactttac
     1621 cctggcaccg ggcgggcccc tgggacagac tcacctgcct caccgcggca tggcccccta
     1681 cccgttcccc cacaacccag aactgcgcaa ggccctcctg caggaccctg cttcacagcc
     1741 cgtgctacct cagccccaga tggccttccc gcgccgctcc cgccgtctct ccaaggaggg
     1801 gattctgcct tccaactccc tcgatggagc tggcacccaa cctggacagg agcccacgag
     1861 caatctgttc ctccatcact ggtctttgca gcagccgccg ccaggcgccc tggggcagcc
     1921 ccattccgaa gccctgggat tcccgttaga actccgggag tcgcagctgc tggtggatgg
     1981 ggacagactg gcacccaatg gccgagagcg ggaggctccc gccgtgggta atgaggaggt
     2041 ctcgagggca gggggcctcg gggactgtgg gcagatgatg cgaagcgggg tgatccagag
     2101 cacaaggcgg agacgcaggg cgtcccagga agctaatttg ctgaccctgg cccagaaggc
     2161 ggtggagctg gcctctctgc aggatgccaa tggctctgag gagaagcgga aaagcgtgct
     2221 ggcctcaact gccaagtgtg gtgtggagtt ttctgagccc gcctcagctg ccaagagagc
     2281 tcgggaggag agtgggatgg tgcccctcat catccccgtg tctgttcctg tgaggaccgt
     2341 gggccccacc gaggtggccc aagttggagg ttctgatgag gatgggaagg gtcttgagca
     2401 gttccccact gaccacaagc cgtcggtcat cgtaacccgc aggaggtcta cccgagtgcc
     2461 cgggacagat actgcagctc aggccgaaga cctgaacgcc aagttggagg gagaaccttc
     2521 tatgcggaaa ccaaagcagc ggccacggcc ggagcctctc atcatcccca ccaaggcggg
     2581 cactttcatt gcccctcctg tctactccaa catcaccccc taccagagcc acctgcgttc
     2641 tcctgtgcgc cttgctgacc acccctctga gaggagcttc gagctgcccc cttacacacc
     2701 accccccatt ctcagccccg ttcgggaagg ctctggcctc tacttcaatg ccatcctgtc
     2761 aaccagcaac gtcccggccc ctcctcctat cacgccaaag agtgcccata ggaccctgct
     2821 ccgctctaat agttctgaag tcaccccgcc cgtcctctct gtgatggggg aggccacccc
     2881 tgtgagcatc gaaccacgaa tcaacgtcgg cacccggttc caagcagaaa tccccacaat
     2941 gagagacaga tccctggcag ccgcagaccc ccataaggct gacttggtgt ggcagccttg
     3001 ggaacatctt gagagcagct gggagaagca gaggcaagtg gatgacctgc tgacggccgc
     3061 ctgttcaagt attttccctg gtgccggcac caaccaggaa ctggccctac actatctgca
     3121 tgagtcccgg ggggacatcc tggaggcgct gaataagctg ctactgaaga agcccctgcg
     3181 gccccacaat cacccactgg ctacctatca ctacacaggc tctgacgagt ggaagatggc
     3241 tgagaggaag ctgttcaaca agggcattgc catctataag aaagatttct tcctggtgca
     3301 gaaactgatc cagaccaaga ctgtggctca gtgcgtggag ttctactaca cctacaagaa
     3361 acaggtgaaa attggccgca acgggacact cacctttggt gacctggata ccggtgctga
     3421 gaagtccggc caagaggaag tcgaggtgga cgttaagact tctcagaagt tcccaagggt
     3481 gcttcctccc agaagagagt ccccaagtga agagaggctg gaacccaaga gggaaatgaa
     3541 agaacccaag aaggaggggg aggaggaggt accagacacc caggaaaagg gagagcagga
     3601 ggaggggcga gagcgcagcc gtcgggccgc ggctgtcaaa gctacacaga cactacagcc
     3661 cactgaggcg gccaatgatg tcctcattct ccggagccac gaacccaatg ccccggggtc
     3721 tgccagtgtt cagacctcag agaagccaag ggaagggccg gggaagtcac gaagggctct
     3781 gcctttcaca gagaagaaga aaaaaccgga ggcatttaat aaaacccaaa accaggagaa
     3841 cactttccct tgtaaaaagt gtggcagggt gttttataag gtgaagagcc gcagtgctca
     3901 catgaagagt cacgcagagc aggagaagaa ggctgcagct ctaagactga aggagaagga
     3961 ggctgcagcc gccgccgcgc accagcaggc gctgaaagaa gagagcggcg aaggcgagaa
     4021 gggctgaggc cctgctggat cctcttgccg ggctccccag aactctgtac ctggaacctc
     4081 tagagaaggc caggagagga tcacttggac tttgctttgc aaaacaaatc aaataatgaa
     4141 aaataaacag gctcttttat tta
//
