LOCUS       NM_001419632            7434 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus MICAL-like 1 (Micall1), mRNA.
ACCESSION   NM_001419632 XM_002729832
VERSION     NM_001419632.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 7434)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7434)
  AUTHORS   Kobayashi,H. and Fukuda,M.
  TITLE     Rab35 establishes the EHD1-association site by coordinating two
            distinct effectors during neurite outgrowth
  JOURNAL   J Cell Sci 126 (Pt 11), 2424-2435 (2013)
   PUBMED   23572513
REFERENCE   3  (bases 1 to 7434)
  AUTHORS   Giridharan,S.S., Cai,B., Vitale,N., Naslavsky,N. and Caplan,S.
  TITLE     Cooperation of MICAL-L1, syndapin2, and phosphatidic acid in
            tubular recycling endosome biogenesis
  JOURNAL   Mol Biol Cell 24 (11), 1776-1790 (2013)
   PUBMED   23596323
REFERENCE   4  (bases 1 to 7434)
  AUTHORS   Rahajeng,J., Giridharan,S.S., Cai,B., Naslavsky,N. and Caplan,S.
  TITLE     MICAL-L1 is a tubular endosomal membrane hub that connects Rab35
            and Arf6 with Rab8a
  JOURNAL   Traffic 13 (1), 82-93 (2012)
   PUBMED   21951725
REFERENCE   5  (bases 1 to 7434)
  AUTHORS   Abou-Zeid,N., Pandjaitan,R., Sengmanivong,L., David,V., Le
            Pavec,G., Salamero,J. and Zahraoui,A.
  TITLE     MICAL-like1 mediates epidermal growth factor receptor endocytosis
  JOURNAL   Mol Biol Cell 22 (18), 3431-3441 (2011)
   PUBMED   21795389
REFERENCE   6  (bases 1 to 7434)
  AUTHORS   Rahajeng,J., Giridharan,S.S., Naslavsky,N. and Caplan,S.
  TITLE     Collapsin response mediator protein-2 (Crmp2) regulates trafficking
            by linking endocytic regulatory proteins to dynein motors
  JOURNAL   J Biol Chem 285 (42), 31918-31922 (2010)
   PUBMED   20801876
REFERENCE   7  (bases 1 to 7434)
  AUTHORS   Sharma,M., Giridharan,S.S., Rahajeng,J., Naslavsky,N. and Caplan,S.
  TITLE     MICAL-L1 links EHD1 to tubular recycling endosomes and regulates
            receptor recycling
  JOURNAL   Mol Biol Cell 20 (24), 5181-5194 (2009)
   PUBMED   19864458
REFERENCE   8  (bases 1 to 7434)
  AUTHORS   Yamamura,R., Nishimura,N., Nakatsuji,H., Arase,S. and Sasaki,T.
  TITLE     The interaction of JRAB/MICAL-L2 with Rab8 and Rab13 coordinates
            the assembly of tight junctions and adherens junctions
  JOURNAL   Mol Biol Cell 19 (3), 971-983 (2008)
   PUBMED   18094055
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Apr 13, 2023 this sequence version replaced XM_002729832.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.40844.1,
                                           SRR26643294.29834.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-699               JAXUCZ010000007.1  112557192-112557890
            700-748             JAXUCZ010000007.1  112562631-112562679
            749-890             JAXUCZ010000007.1  112563004-112563145
            891-982             JAXUCZ010000007.1  112567782-112567873
            983-1125            JAXUCZ010000007.1  112568754-112568896
            1126-1571           JAXUCZ010000007.1  112571257-112571702
            1572-1629           JAXUCZ010000007.1  112573234-112573291
            1630-2000           JAXUCZ010000007.1  112573989-112574359
            2001-2410           JAXUCZ010000007.1  112575751-112576160
            2411-2545           JAXUCZ010000007.1  112579133-112579267
            2546-2672           JAXUCZ010000007.1  112579795-112579921
            2673-2763           JAXUCZ010000007.1  112580041-112580131
            2764-2837           JAXUCZ010000007.1  112580254-112580327
            2838-2952           JAXUCZ010000007.1  112582048-112582162
            2953-2999           JAXUCZ010000007.1  112582325-112582371
            3000-7434           JAXUCZ010000007.1  112583184-112587618
FEATURES             Location/Qualifiers
     source          1..7434
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..7434
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /note="MICAL-like 1"
                     /db_xref="GeneID:362958"
                     /db_xref="RGD:1305415"
     exon            1..699
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     CDS             554..3121
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /codon_start=1
                     /product="MICAL-like protein 1"
                     /protein_id="NP_001406561.1"
                     /db_xref="GeneID:362958"
                     /db_xref="RGD:1305415"
                     /translation="MAGPRGALLAWCRRQCEGYRGVDIRDLSSSFRDGLAFCAILHRH
                     RPDLLDFQSLSKENVFENNRLAFEVAEKELGIPALLDPNDMVSMSVPDCLSIMTYVSQ
                     YYNHFTSSGQAAASPPKPGKDPAAPSPTSTSPAVQPGEEAQGDDLSPDSLSEQGKPQP
                     PSSACAACGQRVHLVQRYLAEGRLYHRHCFRCRQCSSTLVPGSYSSGPEEGTFVCAER
                     CTRLGLGGRSGTRPLSLQKQQPAAAAEAKDGEDSDLSKSVVVVAAEADGLQASSEVQP
                     HTLTKPPLPSKPQDLASPPVSRPTPAPRKASESSALTPPTPRPRSSLQQDGMVEQSVS
                     GDLVNGRLQELPVPKPRGTPKLSERMTAPRKDPPWITLVQTEPKKKPAPLPPSSGPGP
                     LSQASRQVENGGLEEKTQKSPAAEPEPKPYNPFEEEEEEEEASVPAVPSPAPAPPETT
                     PKSLHPWYNITPTSSPKTKKRPAPKAPSASPLVLHASRLSHSEPPSATPSPALSVESL
                     SSESSSHTANTEPSEPPAVPKSSSDPAVHVPGTPGTSANSVTPSAHSSLSSSGELGQP
                     SGEQMPQARTRGSPGTHSTKPFSGATPTPFLLAGDQKSPAPPMGSSSPQMLIKSSCKE
                     NPFNRKPSPSTSPTVRKATKGAKPVRPPAPGHGFPLIKRKVQADQYIPEEDIYGEMDS
                     IERQLDALEHSGVLLEEKLRGGANEGSEDDMLVDWFKLIHEKHLLVRRESELIYVFKQ
                     QNLEQRQADVEFELRCLLNKPEKDWTDDDRAREKVLMQELMTLIEQRDAIVNCLDEDR
                     QREEEEDKMLETMIKKKDFQREAESDSKKKGKFKTMKVLKLLGNKRDAKSKAPTGKS"
     exon            700..748
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     exon            749..890
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     exon            891..982
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     exon            983..1125
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     exon            1126..1571
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     exon            1572..1629
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     exon            1630..2000
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     exon            2001..2410
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     exon            2411..2545
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     exon            2546..2672
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     exon            2673..2763
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     exon            2764..2837
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     exon            2838..2952
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     exon            2953..2999
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
     exon            3000..7434
                     /gene="Micall1"
                     /gene_synonym="RGD1305415"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtaaggagt tgtcccatct tcccagaggg gctctccacg ggacgggttg actcggtctg
       61 gaggagagag aggggctatg tggggcgtcc gcccttccgg ggaaaggggc tcgacggcgg
      121 gggcgtggtc gcagggtggg gccccatcct cctcgcgctc ccccgcaacg cgggccggca
      181 ggggcgggga cggaggcggt gggcgcccat ggccggccca caatgaggac agcgggccgc
      241 ggtgagtaag cggcggccgg ccgggccggg ccacgcgggg cggaggctgc gcgggcaggt
      301 cggggcaggc tggccgggcg gggtcgggag ccgagtccgc agccctagtc gcgccggagc
      361 cgagcgagga caccgaggcc ccgccccggc cgccggtggc gccccgacct ccgagcggcg
      421 ccgcagacac agccggaaac tggccccgcc ggagcccgag cgccagccta gtgccacctg
      481 accccgagtg ggagccacac gaaccgcagc ccgagtccga gtcccagtcc gggccgtccg
      541 agcccggcct gccatggcgg ggccgcgggg cgcgctcctg gcctggtgtc gccgccagtg
      601 cgagggctac cgcggcgtgg acatccgcga cctgagcagc tccttccggg acggcctggc
      661 tttctgcgcc atcctgcacc ggcaccggcc cgacctgctt gacttccaat ctctctccaa
      721 ggaaaatgtc ttcgagaata accgattggc ctttgaagtg gctgaaaagg aactgggcat
      781 ccctgctctc ctggacccca atgacatggt ctccatgagt gtccctgact gtctcagcat
      841 catgacttat gtgtcccagt actacaacca cttcaccagt tctggccaag ctgctgcctc
      901 accacccaaa ccaggaaagg acccagcagc cccctccccc acatccacat cacctgctgt
      961 gcagccagga gaggaggctc agggtgatga cctctcccca gacagcctgt ccgagcaggg
     1021 caaaccgcag ccccccagca gtgcatgcgc agcctgtggg cagagggtgc acctggtgca
     1081 gcggtacttg gcggagggca ggctctacca ccggcactgc ttccgatgtc ggcagtgctc
     1141 cagcacgttg gtcccaggct cttacagtag tgggcccgag gaaggcacct ttgtgtgtgc
     1201 agaacgctgc accaggctgg ggctgggagg ccggtcagga actaggcccc tttcactgca
     1261 aaagcaacag ccggcggcgg cagcagaagc caaggatgga gaggatagtg acctgagcaa
     1321 gagcgtggtt gtggtggccg ctgaggcaga tgggctccag gccagctctg aggtacagcc
     1381 ccacaccctg accaagccac ctcttcccag caagccccag gacctggcca gtccccctgt
     1441 tagcaggccc acacctgccc ccaggaaggc ttctgagagt tcagccttaa cgcctccaac
     1501 accgcggcct cggtctagcc tacagcaaga tggcatggtg gagcagagtg tcagcggtga
     1561 ccttgttaac ggaagactac aggaactgcc tgttcccaag ccaagaggga cacccaagct
     1621 gtcagagagg atgacagcac caaggaagga ccccccctgg atcacattgg tacagacaga
     1681 gccaaagaag aagccagccc cactgccccc cagcagtggt cctgggccac tgagtcaggc
     1741 cagcaggcag gtggagaacg gaggcctgga ggaaaagacc cagaaaagcc cagcagctga
     1801 gccagagccc aagccctaca acccctttga ggaggaagag gaagaagaag aagcgtctgt
     1861 cccagcagta cccagccctg ccccagcccc accagagacc acccccaagt ccctgcaccc
     1921 ctggtacaac atcaccccca ccagcagccc caagacaaag aagcgccctg cccccaaagc
     1981 acccagtgct tccccacttg ttctccacgc ctcccgccta tcacactcag aacctccttc
     2041 agcaacgccg tcaccagccc tcagtgtgga gagtctgtca tccgagagtt ccagtcacac
     2101 tgccaataca gagccttcgg agccacctgc cgtgcctaag agctcctcgg atcctgctgt
     2161 gcacgtgcct ggcacccctg gcacatctgc gaactctgtc accccctcag cccactcttc
     2221 cctatcgtct tctggggagc tagggcagcc tagtggtgaa caaatgccac aggccaggac
     2281 aaggggcagc ccaggtaccc actccaccaa gcccttcagt ggtgccaccc ccacgccctt
     2341 cttgttggct ggagatcaga agagccctgc acctcccatg gggagctctt caccacagat
     2401 gctgatcaag tcttcctgca aggagaatcc tttcaaccgg aaaccatctc cctccacatc
     2461 tccaactgta aggaaggcca ccaaaggagc caagcctgtg aggccacctg cccctggaca
     2521 tggctttcca ctaatcaagc gcaaggtcca ggctgaccag tatattcctg aagaggacat
     2581 ctatggtgag atggacagta ttgagcgcca gctggatgcc ctggagcaca gcggagttct
     2641 gttggaggag aagctgcgtg gtggagccaa tgaaggcagc gaggacgaca tgctggtgga
     2701 ctggttcaag ctcattcacg agaagcatct actagtgcgg cgagagtcgg agctcattta
     2761 tgtcttcaag cagcagaacc tggagcagcg ccaggctgat gtggagtttg aactccggtg
     2821 ccttctcaat aagccagaga aggactggac agacgacgat cgggccagag agaaggtgct
     2881 gatgcaggag ctcatgaccc tcatcgaaca gcgcgatgcc attgtcaact gcctggacga
     2941 ggaccggcag agggaagaag aggaagacaa gatgttggaa actatgatca agaagaaaga
     3001 tttccaaaga gaggcagagt ctgacagtaa gaagaagggc aagttcaaga ccatgaaggt
     3061 gctgaagctt ctgggaaaca agcgagatgc caagagcaag gcccctacgg gcaagagctg
     3121 acagccaagg aagctgcctt cctttcctct cctggatcct ggaggccaga gcagcactct
     3181 gctgcccctg gacctgccaa gggggacagt gaccttggga aggagtctct gggtgacctt
     3241 tgccctcctc aggggtctcc agctggtctg ggctaaagat ttttccctct tccctgtgtc
     3301 ccagacagct gtgactttgc cctgactcca gatgctgtga cgtgcctggg gacaagcagg
     3361 gatgcaggct ccaggcagag gcagtggctc tccttgttgc tctctgaacc aggccagatg
     3421 gggtcgtcat cagtcctgct cacagcaggc cctggcttag ggcttgcata ccttgcagca
     3481 ggccagcagc aaggttggct gcctcgctgc ttccttccgc cctgaccctt ggcccacctt
     3541 cctgtctagt gcagatgccc ttgagactct gtcacctcac cctggagctt tatttatgaa
     3601 gtctcaagtc cagcccttga gtgagtgctc tgtgtagtgt cagaagggaa tggactgatg
     3661 acagttgttt cctccccctc atctccctcc atctgtggaa atcctcatct actacacagg
     3721 gacctctgct ggctgtgctg gggccgtgac tcaggtcagc ctaggaaggt gtgctttggc
     3781 tggaggttct ctaattcagg ctttctgccc actctatgcc caggggatgg gcccattcct
     3841 tttttgtggt tggtgcagcc tgtcttttct gttgtctctt cactctgagg tctgctagcc
     3901 actcaccact gagtgaagtg atgggatgcc tctttttgct gtggactgtg ctaggcagct
     3961 tatggtccaa gcactgttct tacactcgca gacttcagag ttcctccctc tgtgcatcct
     4021 gggaaggaac tcactatatc tcagttgccg gtgccctaca gccttgggca cagccacatc
     4081 tgtgccctct tgcttgtctg agctgtccac tcagttgaga acctgaccca tgtagccttt
     4141 ggtggtctct ccagatgcac ctgctgtcct agagccaagg ccaccacctc agaggtcttt
     4201 cacaggagcc ttatgactca gttgctataa cccaagaggg ctctaccagg ctgtttcact
     4261 gtcaaggaaa gttcatatct cagtggaaca gaacaacctt tctcatagtc acctgtgttc
     4321 tgtgagcatg ggcccagggt tgccagatct tgcccatttt tttcagaaga aactcagaat
     4381 ccagttctcc tacaggtgta agttgtaaat gttgacatca aagttgagtt tctcattgtg
     4441 gactacactt gtcctgggtt ttccattgcg ctaggcctgt aaatttgaaa gcttgtccct
     4501 actaattgaa tgctcatctg ctggctactg catagaccag tttattctat gacaaggaca
     4561 caggtcatat gttctattgg aattatgggg aacgtccagc aggagcagga aatattttca
     4621 tttatgggat aggaaaatga caatattggt gaaggtcagg ctgctcaggg tcaaccgcct
     4681 aaaggaagga cactgatgtg cagtgtacca cctgggatgc aggtggtgca cctggtgggg
     4741 agtgggtgta ccagctgggg agcaggtggg gtgccaagta tcgagaaggg ctgctttcct
     4801 tgtcaggtgc tgcttgacct tcaggctgag gcctcagggg ccctggaaag gaactgtggc
     4861 atctgccagg gcccttttgc atagggcctt ctcttttgca tttttcccag tctttggatg
     4921 ccatccccgt gacctttgcc ctgagtgggc tgctctgcag ttaattactt gagtatcttg
     4981 gtgaacatga gttttcacac cgtagtcctg aaggttagca ctggttgcag gctgcttatg
     5041 aaccttgtta accctttctt ctggaaattt gcaaacagcc attagactcc acctgtgctg
     5101 gacagattct gaatctgaac aaataagcag taccctgggg aaacaaggtg cacatgtcac
     5161 ggccaagtga aatgtgttta ttggccagtt aatcattgtg gttaaacatt tgcctaagac
     5221 tacaaggcgg caaagactta gatcctaagg aaggaaagaa tcatgttcac ttttaggttc
     5281 agaaaggcag aacagagcac ctgaggccag ctgtgacatc agaaaagccg gagagagggt
     5341 gccctcaggc acacgtccaa ggtggtgagc ctgagcttca ccatggtgtg cctgggcctt
     5401 tccctagaaa ggcttcagta cagtagctgg gacatggaca tcccactgag gctctgcatc
     5461 cctgggcagc gtctagggta ctgtctcatg ccccaggaca gtgccatatc atgatctggc
     5521 atggcctgtg tgggtggaca ggcctgggag gtgacactgc agagtgaagg gctccagttc
     5581 tggctgttgt gctaggttgg cagtctcact gggcgagccc gccctagtct tggtctaagt
     5641 ggtggtgagg gccttccgaa gctccttgct cctcctgcga tcaatgtcct ccatttcccg
     5701 gagtttctgc aaagagccgc caggaagagc tgtggtcatg gcaggatgcc tgagatgcca
     5761 cctatccttg aggcctgggt tcctcccatt tgactctact cttcccctct ttggtggcct
     5821 ctcctacctg ggagatttca gccaggatga ttcctcggta ttgcttgccc tgtcccagag
     5881 cctccatggc agccaagaat tctttcctgt cctggatttc cttcaccact gcacagaggg
     5941 gaggggccat catgtgcaca gggcagtgtg actagagtgc acagggtctc aggcagtgca
     6001 tggtctctga gggagactgg gtgtctatca agccatgttg ctcttgttag ccccagcagt
     6061 tctacaccac acactacaca acacacacac acacacacac acacacacac tagctcacgt
     6121 tcgtcaaacc ggtccagctc aggagctggg tcttcttgct gcacgtgggg aacctttttc
     6181 cgttcctcca tgtccttccc agtggcaaag atattttgga gtcttcgttt ctccttctcc
     6241 agatctcctg tggggcccag aaatgatctt gctaagtaag gtacagagca aggcctgctc
     6301 ccttgttccc attagcggct gtgtgcactg tgggtatctg ggttgtgagg agtgggcctc
     6361 tccagatccc gctcttcact gtctgttcct gagcagaact tgttaggcta gcagtggaaa
     6421 caaccaagaa aaggcaccag tgcaaagcta atgggtaacc cagaaaccag gcctctgaaa
     6481 tgacctgtgt gtaggaactg tggggatgtt agtgggtctg ggccaaaggc aatgttagag
     6541 gaggaggggc tccccaatgt ggcctcaaat gcaggcagat gaacttgagg gaacaggagg
     6601 ataagcagct cacagccaca tgtccctctg ggattgggaa aactggatta atttgaagga
     6661 agttctagga agataaaggg ggccacctgc ctggtttcct gccagagttt gttactagct
     6721 cgtttgaatg atactgtgtg tcctgggctg atgtgacccc agaagagagc tctacggtca
     6781 ccacttactg gtggcctgag gcttgaattg ctcacgactg tatgccccat tggcttgaca
     6841 caagctggcg ggcctgaggt gagtgtgggt agccaggatg ggaggcaggt agatggctgc
     6901 agctgatttc ttggagggag agcccctctg gctggatgtc gggttgcact gcaggggtag
     6961 aggggctcct cctgggaaaa aaaaagagca agtgggagca cctgtttggc ttgctttcag
     7021 agaaataagg tagctgccag aagccaaaca gtgtagacag tctccaaatc cgtccaggcc
     7081 cgctcctctg aaagctatag taacaattag gtggttgctc cttgttcttg aagcttctaa
     7141 aacatccaag gattgatcgt ttggtatgta cacatacggt tcttacactg gatcataccc
     7201 tatggtcagt aacagatcct ttcacttagc aatttatcac ggccagcttc ctgtaagcac
     7261 atgcacaggt aacttatttt tcatagctgt gtactagttg taaaaacgtt acattattta
     7321 ttcagctagt ccacttctgg acattctggt tgtccctggt attttgtttc ttttttgttg
     7381 gctggatttt tactacttct gacaatgctg caataaacat tcttatacac tgaa
//
