LOCUS       XM_039111598            2881 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MIA SH3 domain ER export factor 2
            (Mia2), transcript variant X17, mRNA.
ACCESSION   XM_039111598
VERSION     XM_039111598.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111598.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2881
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2881
                     /gene="Mia2"
                     /gene_synonym="Ctage5; Mgea6"
                     /note="MIA SH3 domain ER export factor 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 62 ESTs, 1 long SRA read, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 60 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100912115"
                     /db_xref="RGD:6488546"
     CDS             170..2509
                     /gene="Mia2"
                     /gene_synonym="Ctage5; Mgea6"
                     /codon_start=1
                     /product="melanoma inhibitory activity protein 2 isoform
                     X17"
                     /protein_id="XP_038967526.1"
                     /db_xref="GeneID:100912115"
                     /db_xref="RGD:6488546"
                     /translation="MRADFNPNGFSLELAICVLTVGLLAIVLFLWRGFRSIRSRFYVG
                     REKKLALELSALIEEKCKLLEKVSFVQKEYEGLESSLKEASFEKESTEAQSLEFVEGS
                     QISEAAYENLERSKSKLEDEILLLEKKLEEERVKHSEQDELMADISKRIQSLEDESKS
                     LKSQVAEAKTTFRIFEINEERLRGAIKDALNENSQLQESQKQLLQEAEIMKEQVSDLD
                     KQKVTLEESRAQAEQVLSEKETQIESLIKSLLKMKDWAAVLGDDTADDGNLDLDMKSG
                     LEDTASLDNQPKGALKKLIYAAKLNASLKALEGERNQIYTQLSEVDQIKEDLTEHIKS
                     LESKQASLQSENTEFESESQRLQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKL
                     SKVDERISHAAEELETYRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLER
                     NLNDLRKENAHNRQKLTETEFKFELLEKDPYALDVPNTAFGREHSPYGPSPLGRPPSE
                     TRAFLSPPTLLEGPLRLSPLLPGGGGRGSRGPENLLDHQMNTERGDSSYDRLSDAPRA
                     PSDRSLSPPWEQERRMTAHPPPGQPYSDPVPQRQDRFYSNSGRLSGPAELRSYNMPSL
                     DKVDGPVSSEMESSRNDTKDNLGNSNVPDSPHPTESEAAGRGFIPPPFPPVRAPLFPV
                     DPRSQFMRRGPSFPPPPPGNIYTAPRDYFPPRDFPGPPLPPFPGRTVYAPRGFPPFLP
                     PRAGFFPPPPHHENRSELPPDMSPPSKEPAADPPETQET"
ORIGIN      
        1 gcaactcctg ctatctcctc atagtagcag tttctgaaac tccctagggt gatgtggcaa
       61 agaagagttt tgagtatcga caaagtaggc ctccgtttgg tcttagaaat cacaggctgc
      121 accgtggctg tttctgattt tgtgtgttgt ggcagcattg cctgaagata tgagagcaga
      181 cttcaatccc aatggttttt cattggaatt ggcgatatgt gtgcttaccg ttggactgct
      241 tgcaattgtc ctgtttctgt ggagaggctt ccgatcaatt cgaagccgat tttatgtggg
      301 gagagaaaaa aaacttgctc ttgagctttc tgcactaatt gaagaaaaat gcaaactact
      361 tgaaaaagtc agctttgttc aaaaggagta tgaaggctta gagtcatctt taaaggaggc
      421 cagctttgag aaggagtcaa cagaagcaca aagtttggag tttgttgaag gatcacaaat
      481 atcagaggca gcctatgaaa atctagaaag atccaaatct aaacttgaag atgaaatact
      541 actcctagag aaaaagctag aagaagagag agttaaacat tctgaacagg atgagttgat
      601 ggctgatatt tcaaaaagga tacagtccct agaagatgaa tcaaagtctc tcaaatcaca
      661 agtagctgaa gccaaaacga cctttagaat atttgaaatc aatgaagagc gactcagggg
      721 agcaataaaa gatgccttga atgaaaattc tcaacttcag gaaagccaga aacagctttt
      781 acaggaagct gaaataatga aagaacaagt gagtgatctc gataagcaga aagtgacatt
      841 ggaagagtcc agagcacagg cagagcaagt tctgagtgag aaggaaactc agattgagtc
      901 tctgatcaaa agcctgctaa agatgaagga ttgggctgct gtgcttggag acgacacagc
      961 agatgatgga aatctggacc tggatatgaa gagtggccta gaagacactg cttccttaga
     1021 taatcagcca aagggagctt tgaagaagct gatttatgca gccaagttaa atgcttcttt
     1081 aaaagctctg gaaggagaaa gaaatcaaat ttatactcag ttatctgaag tggatcaaat
     1141 aaaagaagac cttacagagc atatcaaaag tcttgagtct aaacaagcat ccttgcagtc
     1201 agaaaacaca gagtttgaaa gtgagagcca gagacttcag cagaaactga aagtcataac
     1261 tgagctgtac caagaaaatg agatgaagct tcacaggaaa ttaacagtag aggaaaatta
     1321 ccgattagag aaagaagaaa aactttccaa agtagatgag agaatcagcc atgcggccga
     1381 ggaactggag acctacaggc agcgtgccaa ggaccttgaa gaagaactgg agagaacaat
     1441 tcattcttac caggggcagg ttatttctca tgaaaaaaaa gcacatgata attggctggc
     1501 agctcggact cttgaaagaa atctcaatga tttaagaaaa gagaatgccc acaacagaca
     1561 aaaattaact gaaacagagt ttaaatttga acttttagaa aaagatcctt atgcacttga
     1621 tgttccaaat acagcatttg gcagagagca ctccccatat ggtccctcac cattgggccg
     1681 acctccatct gaaacgagag cttttctctc tcctccaacg ttgttggagg gtccactcag
     1741 actctcccct ttgcttccag ggggaggagg aagaggctca cgaggccctg agaaccttct
     1801 ggaccatcag atgaacactg aaagaggaga ctcaagctat gacaggttat ctgatgctcc
     1861 tagagcacct tctgacaggt ccctgtcacc tccatgggaa caagaacgca ggatgacagc
     1921 ccatccacca ccaggccaac catattctga tccagtgcca caaaggcaag atagatttta
     1981 ttccaattct ggtagactct ctgggccagc ggagctcaga agctataaca tgccttcctt
     2041 ggataaagtg gatgggccag tatcctcaga aatggaatcc agtagaaacg ataccaaaga
     2101 taatcttggt aactctaatg tgcctgattc tcctcacccc actgaaagtg aagcagctgg
     2161 ccgaggcttc atcccaccac catttccccc agtcagagcc ccattgtttc cagtggatcc
     2221 aaggagccag ttcatgagaa ggggcccctc ttttccccca cctcctccag gaaacatcta
     2281 tacagctcct cgagattatt ttccaccaag ggacttccct ggaccaccac ttcctccgtt
     2341 cccagggaga actgtgtacg caccaagggg ctttccacct ttccttcccc caagagctgg
     2401 gttcttcccc ccacctccac atcatgaaaa tcggagtgag ctcccgccag acatgagtcc
     2461 gccttcgaaa gaacctgcag ctgaccctcc agaaacacag gagacctgac cgtgttgggt
     2521 ctgtcggcag tcattgcctt ctcactttca gtttaagtaa ctgccgttac ttacctgatt
     2581 atatttttgc tcaaattgaa gcttaatgga attataattc tcaggatagt attttgtaaa
     2641 taaagatgat ttaaatatga atcttatgag taaattattt ccattttatt ttattttaga
     2701 tagtaactat cttactttga ttacctcatc tatagttatg cggttttata tatgtaatct
     2761 catagttggg gacatctcaa actcgaaagg ctgtgtcttt ataccgggaa tgtgttcacc
     2821 atggttgtag acaatgtaaa agtaactatg tttaatcaaa taaaatttta attgatttaa
     2881 a
//
