LOCUS       XM_017594450            4759 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MIA SH3 domain ER export factor 2
            (Mia2), transcript variant X1, mRNA.
ACCESSION   XM_017594450
VERSION     XM_017594450.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017594450.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017594450.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4759
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4759
                     /gene="Mia2"
                     /gene_synonym="Ctage5; Mgea6"
                     /note="MIA SH3 domain ER export factor 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 66 ESTs, 1 long SRA read, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 11 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100912115"
                     /db_xref="RGD:6488546"
     CDS             197..4387
                     /gene="Mia2"
                     /gene_synonym="Ctage5; Mgea6"
                     /codon_start=1
                     /product="melanoma inhibitory activity protein 2 isoform
                     X1"
                     /protein_id="XP_017449939.1"
                     /db_xref="GeneID:100912115"
                     /db_xref="RGD:6488546"
                     /translation="MAEVSVQRILLLVISLAKCLEGTKLLAHLKKCGDLECETLITRV
                     LALRDHTGPDCRYLNFTTGEEISVYVKLGGDREDLWAGSKGKDFGFFPRDAVEIEEVF
                     ISEEVEMPTKESDFLCLLGEGYIFGSEQSEFISDDDGEEHMYPYEKDEDQHYNIYEDD
                     FQPEHDFYEASEGSLPEDQISASEAAEDFRFSSKWKDWEGTASEGTGEQDYTPDPDQA
                     LPSLSTPERQGWFGLGIEEAEEKTFEPDTEPTQESSFQSRKLTLEEESDLEKLHDGEP
                     QGELEQEPKSQFDSETSEFSSAPEEQFDLASGSESAPNPKASGWFGGGFTSYLGFGNE
                     GAELEPLSEESHLPLQDVPSPVSPDEDAPAPCRETSTVKEDTVVNDSSVLSPSWFYFG
                     FGMLGFTNADEDKIISDNGENEDGEVDDLKHPTKNDFDPEKEQKRKTEDQTGKESTLE
                     KIDDSGSMQYLKKFFDNPWGFQNRPEDTELPFSKQRLDEDDIVGSDKTEELLTENSPT
                     GSMRDSMMSRSRYSLSDVASETESPTGVHEGINFKSSSSERNEEDSKSWVDPEELSVA
                     QTESLEGALLETQLVSPNERAAEFQLLKYLLHIDVYSFMRSAFSPIEILLESVVAALP
                     EDMRADFNPNGFSLELAICVLTVGLLAIVLFLWRGFRSIRSRFYVGREKKLALELSAL
                     IEEKCKLLEKVSFVQKEYEGLESSLKEASFEKESTEAQSLEAAYENLERSKSKLEDEI
                     LLLEKKLEEERVKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEER
                     LRGAIKDALNENSQLQESQKQLLQEAEIMKEQVSDLDKQKVTLEESRAQAEQVLSEKE
                     TQIESLIKSLLKMKDWAAVLGDDTADDGNLDLDMKSGLEDTASLDNQPKGALKKLIYA
                     AKLNASLKALEGERNQIYTQLSEVDQIKEDLTEHIKSLESKQASLQSENTEFESESQR
                     LQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDERISHAAEELETYRQRA
                     KDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLRKENAHNRQKLTETEF
                     KFELLEKDPYALDVPNTAFGREHSPYGPSPLGRPPSETRAFLSPPTLLEGPLRLSPLL
                     PGGGGRGSRGPENLLDHQMNTERGDSSYDRLSDAPRAPSDRSLSPPWEQERRMTAHPP
                     PGQPYSDPVPQRQDRFYSNSGRLSGPAELRSYNMPSLDKVDGPVSSEMESSRNDTKDN
                     LGNSNVPDSPHPTESEAAGRGFIPPPFPPVRAPLFPVDPRSQFMRRGPSFPPPPPGNI
                     YTAPRDYFPPRDFPGPPLPPFPGRTVYAPRGFPPFLPPRAGFFPPPPHHENRSELPPD
                     MSPPSKEPAADPPETQET"
ORIGIN      
        1 cagactgaga ccagagagtg ttagttcctg aagctgagcc agcgcaccgt gaggaaaatg
       61 tagctacaaa gggattgaag aacactcagc tttttcctcg ctacggaagg aagcatcaac
      121 tctaaagcat caactctctc tggcatgcct ggtgcattct aacgctggtg caggatcctt
      181 ggtggcttgt ttaagcatgg cggaagtcag tgttcaaaga atccttcttt tggttatttc
      241 tctggcaaag tgtctggagg gtacaaagtt gctggcacac cttaaaaagt gtggtgactt
      301 ggaatgtgaa actttgatca ccagagtctt agccctgaga gatcacacag gacctgactg
      361 tcggtacctg aacttcacta cgggagaaga gatatctgtt tatgtgaaac tcggaggaga
      421 cagagaagat ctgtgggcag gaagcaaagg aaaagacttt ggattttttc ccagagatgc
      481 agtcgagatt gaagaggtgt tcatatctga agaagtcgaa atgccaacta aagagtctga
      541 ctttctgtgc cttcttggag aaggctacat atttggaagt gaacagagtg agtttatcag
      601 tgatgatgat ggtgaagaac atatgtaccc atatgaaaaa gatgaagacc aacactataa
      661 catatatgaa gatgattttc agccagaaca cgacttttat gaagcttctg aagggtcttt
      721 gccggaagac caaatttcag catcagaagc tgctgaggat tttaggtttt ccagtaagtg
      781 gaaggactgg gaagggactg caagcgaggg cacaggggag caggattaca ctccagaccc
      841 cgaccaagcc ttgccatccc tcagtacgcc ggaaaggcaa ggatggtttg gcctggggat
      901 agaagaagct gaagagaaga cttttgaacc agatacagaa cccacacaag aaagctcatt
      961 tcagagcaga aaattaacac tagaagagga gagtgacctg gagaaactac atgatggcga
     1021 gccccaaggg gaacttgagc aagagccaaa atcacagttt gattcggaga catcagaatt
     1081 cagttcagcg ccagaggaac agtttgacct ggcatctggg tcggagagtg cacccaatcc
     1141 gaaagcctct ggctggtttg gtggtggatt tacaagttat ttaggttttg gaaatgaggg
     1201 tgccgaactt gagccattgt ctgaagaaag tcatctgcca ttacaagatg ttcccagtcc
     1261 tgtctcaccg gatgaagatg ctccagctcc atgcagagaa acatcaacag tcaaggaaga
     1321 tacagttgtc aatgatagct ccgttctcag tccaagctgg ttttactttg gttttggtat
     1381 gctaggcttt acaaatgccg atgaagacaa aattatttca gacaacgggg aaaacgaaga
     1441 cggtgaggta gatgacctca aacatcctac aaaaaatgac ttcgaccctg aaaaggaaca
     1501 aaaaaggaaa acagaagacc aaacaggcaa ggaaagcacc ttggagaaga tagatgattc
     1561 tggttctatg cagtatctga agaagttctt tgataatcct tggggcttcc agaatcgccc
     1621 ggaggacaca gaattaccat tttccaaaca gaggctagat gaagatgaca tagtaggaag
     1681 tgacaaaact gaagaacttc tcactgaaaa ttctcccacc ggtagcatga gagattccat
     1741 gatgtcgagg agcagataca gtctgtcaga tgtggcctct gaaacagagt cacccacggg
     1801 agtccacgaa ggaataaatt ttaaatcctc atcttctgaa aggaatgagg aagattcaaa
     1861 atcatgggtg gaccctgaag agctctctgt ggcacaaaca gagtctctgg aaggtgcctt
     1921 gctcgagact cagctggttt ctccaaatga gcgtgctgca gagtttcagc ttctgaagta
     1981 tttgttacac atcgatgtct acagtttcat gagatctgct ttttcaccaa ttgaaattct
     2041 tttagaaagt gttgtggcag cattgcctga agatatgaga gcagacttca atcccaatgg
     2101 tttttcattg gaattggcga tatgtgtgct taccgttgga ctgcttgcaa ttgtcctgtt
     2161 tctgtggaga ggcttccgat caattcgaag ccgattttat gtggggagag aaaaaaaact
     2221 tgctcttgag ctttctgcac taattgaaga aaaatgcaaa ctacttgaaa aagtcagctt
     2281 tgttcaaaag gagtatgaag gcttagagtc atctttaaag gaggccagct ttgagaagga
     2341 gtcaacagaa gcacaaagtt tggaggcagc ctatgaaaat ctagaaagat ccaaatctaa
     2401 acttgaagat gaaatactac tcctagagaa aaagctagaa gaagagagag ttaaacattc
     2461 tgaacaggat gagttgatgg ctgatatttc aaaaaggata cagtccctag aagatgaatc
     2521 aaagtctctc aaatcacaag tagctgaagc caaaacgacc tttagaatat ttgaaatcaa
     2581 tgaagagcga ctcaggggag caataaaaga tgccttgaat gaaaattctc aacttcagga
     2641 aagccagaaa cagcttttac aggaagctga aataatgaaa gaacaagtga gtgatctcga
     2701 taagcagaaa gtgacattgg aagagtccag agcacaggca gagcaagttc tgagtgagaa
     2761 ggaaactcag attgagtctc tgatcaaaag cctgctaaag atgaaggatt gggctgctgt
     2821 gcttggagac gacacagcag atgatggaaa tctggacctg gatatgaaga gtggcctaga
     2881 agacactgct tccttagata atcagccaaa gggagctttg aagaagctga tttatgcagc
     2941 caagttaaat gcttctttaa aagctctgga aggagaaaga aatcaaattt atactcagtt
     3001 atctgaagtg gatcaaataa aagaagacct tacagagcat atcaaaagtc ttgagtctaa
     3061 acaagcatcc ttgcagtcag aaaacacaga gtttgaaagt gagagccaga gacttcagca
     3121 gaaactgaaa gtcataactg agctgtacca agaaaatgag atgaagcttc acaggaaatt
     3181 aacagtagag gaaaattacc gattagagaa agaagaaaaa ctttccaaag tagatgagag
     3241 aatcagccat gcggccgagg aactggagac ctacaggcag cgtgccaagg accttgaaga
     3301 agaactggag agaacaattc attcttacca ggggcaggtt atttctcatg aaaaaaaagc
     3361 acatgataat tggctggcag ctcggactct tgaaagaaat ctcaatgatt taagaaaaga
     3421 gaatgcccac aacagacaaa aattaactga aacagagttt aaatttgaac ttttagaaaa
     3481 agatccttat gcacttgatg ttccaaatac agcatttggc agagagcact ccccatatgg
     3541 tccctcacca ttgggccgac ctccatctga aacgagagct tttctctctc ctccaacgtt
     3601 gttggagggt ccactcagac tctccccttt gcttccaggg ggaggaggaa gaggctcacg
     3661 aggccctgag aaccttctgg accatcagat gaacactgaa agaggagact caagctatga
     3721 caggttatct gatgctccta gagcaccttc tgacaggtcc ctgtcacctc catgggaaca
     3781 agaacgcagg atgacagccc atccaccacc aggccaacca tattctgatc cagtgccaca
     3841 aaggcaagat agattttatt ccaattctgg tagactctct gggccagcgg agctcagaag
     3901 ctataacatg ccttccttgg ataaagtgga tgggccagta tcctcagaaa tggaatccag
     3961 tagaaacgat accaaagata atcttggtaa ctctaatgtg cctgattctc ctcaccccac
     4021 tgaaagtgaa gcagctggcc gaggcttcat cccaccacca tttcccccag tcagagcccc
     4081 attgtttcca gtggatccaa ggagccagtt catgagaagg ggcccctctt ttcccccacc
     4141 tcctccagga aacatctata cagctcctcg agattatttt ccaccaaggg acttccctgg
     4201 accaccactt cctccgttcc cagggagaac tgtgtacgca ccaaggggct ttccaccttt
     4261 ccttccccca agagctgggt tcttcccccc acctccacat catgaaaatc ggagtgagct
     4321 cccgccagac atgagtccgc cttcgaaaga acctgcagct gaccctccag aaacacagga
     4381 gacctgaccg tgttgggtct gtcggcagtc attgccttct cactttcagt ttaagtaact
     4441 gccgttactt acctgattat atttttgctc aaattgaagc ttaatggaat tataattctc
     4501 aggatagtat tttgtaaata aagatgattt aaatatgaat cttatgagta aattatttcc
     4561 attttatttt attttagata gtaactatct tactttgatt acctcatcta tagttatgcg
     4621 gttttatata tgtaatctca tagttgggga catctcaaac tcgaaaggct gtgtctttat
     4681 accgggaatg tgttcaccat ggttgtagac aatgtaaaag taactatgtt taatcaaata
     4741 aaattttaat tgatttaaa
//
