LOCUS       XM_002729615            2284 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus MFSD2 lysolipid transporter B,
            sphingolipid (Mfsd2b), transcript variant X2, mRNA.
ACCESSION   XM_002729615
VERSION     XM_002729615.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086024) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_002729615.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2284
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2284
                     /gene="Mfsd2b"
                     /note="MFSD2 lysolipid transporter B, sphingolipid;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 ESTs, 1 long SRA read, 2 Proteins"
                     /db_xref="GeneID:500624"
                     /db_xref="RGD:1561716"
     CDS             92..1576
                     /gene="Mfsd2b"
                     /codon_start=1
                     /product="sphingosine-1-phosphate transporter MFSD2B
                     isoform X2"
                     /protein_id="XP_002729661.1"
                     /db_xref="GeneID:500624"
                     /db_xref="RGD:1561716"
                     /translation="MSVPHGPTRAPVAEPHTQEPGSDKRDGRLSVCTKVCYGIGGIPN
                     QVASSASAFYLQLFLLDVAQIPAAQVSLALFGGKVSGAVADPVAGFFINKSRRTGSGR
                     LMPWVLGCMPLIALAYFFLWFLPPFTSLRGLWYTSFYCLFQALATFFQVPYTALTMIL
                     TPSPRERDSATAYRITMEMAGTLMGATVHGLIVSSAHGSHRCEGTVHPTSTAVSPDVA
                     RLYCIAAAVVALTYPVCGSLLCLGVKEQPDPSAPASGQGLSFFTGLGITSRHPPYLNL
                     VVSFLFISAAVQVEQSYFVLFCTHASKLQDHVQNLVLTILVSAVLSTPLWEWVLQRFG
                     KRTSALGICVMVPFSILLAAVPSAPVAYAVAFVSGVSIAVSLLLPWSMLPDVVDDFQL
                     QHRHGPGVETIFYSSYVFFTKLSGAGALGISTLSLGFAGYEAGACQQAEEVVVTLKVL
                     IGAVPTCMILIGLCILLVGPTPKTPSQDTSSQLSLRRRTSYSLA"
     polyA_site      2284
                     /gene="Mfsd2b"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cctgcacact gggaccacgc ccacttggcc acatccagcc tccccggtag tccccgcgcc
       61 gctacagcag tcagagctga gcagccacag gatgtcggtg ccccacggac ccacccgggc
      121 tccagtcgca gagcctcaca cccaggagcc aggctcggac aagagagatg gtcgcctctc
      181 agtctgtaca aaggtgtgct atggcattgg tgggatcccc aaccaggtgg cctctagcgc
      241 ctcagccttc tacctacagc tcttcctact tgatgtggcc cagatccccg ctgcccaggt
      301 gtcacttgcc ttgttcggag ggaaggtgtc cggggcagtt gcggaccctg tggctggctt
      361 cttcatcaac aagagcagaa ggacagggtc tggacggcta atgccttggg tgctgggctg
      421 catgccctta atcgcactgg cctacttctt cctgtggttc ctgcccccct tcaccagcct
      481 gcgcgggctc tggtacacca gcttctactg cctgttccag gccctggcta cgttctttca
      541 ggtgccctac actgcgctca ccatgatcct caccccgagt cccagggagc gggactctgc
      601 cacagcgtac cggattacca tggagatggc aggaacactg atgggagcca ctgtccacgg
      661 gctcattgta tccagtgccc atgggtccca tagatgtgag ggtactgtgc accctacgag
      721 tactgctgtc tccccagatg tagctcgact ctactgtatt gcagccgctg tggttgcgtt
      781 gacttaccct gtgtgtggca gtttgctgtg cctaggagtg aaggagcaac cagacccttc
      841 tgccccagct tcaggccaag gcctgagctt cttcacaggc ctgggcatca cttcccggca
      901 cccaccctac ctgaacctgg tggtctcttt cttgttcatc tcagctgctg tccaggtgga
      961 acaaagttac tttgtcctgt tctgtacaca cgcctctaag ctacaagatc acgtccagaa
     1021 cttggtgcta accatactgg tctcggctgt gctgagcacc ccactgtggg agtgggttct
     1081 ccagcgattt gggaagagga catctgcatt ggggatctgt gtgatggtgc ccttttctat
     1141 cttgttggct gctgtgccct cagcaccggt ggcctacgct gtggcctttg tctctggcgt
     1201 gagcattgct gtgtccctgc tgctaccttg gtccatgctg ccagatgtgg tggatgactt
     1261 ccagctgcag caccggcatg gcccaggcgt ggagaccatc ttctactcat cctatgtctt
     1321 cttcaccaag ctgtcaggcg cgggcgcctt gggcatctct accctcagtt tggggttcgc
     1381 agggtatgag gcaggagcct gccagcaagc agaagaagtg gtggtcacgc tcaaggttct
     1441 catcggtgct gtgccaacct gtatgatcct tattggtctg tgcatcctcc tggttggccc
     1501 cactcccaag actccaagcc aggacacttc ctcccagcta agccttcgga ggaggactag
     1561 ctacagcctt gcctgaactt taaggggacc tctgtgagct ggaaaggaga aacctgcatt
     1621 ttctggaact ctcttcatcc agcccctgag tatatcctag caacttagct cagggcattt
     1681 tcccttgtgg tggagacttt agtgacatcc cctgagggga tggttcaggt tctgtctgtc
     1741 cgggaactct gccccacagc tccttgcctg ttgaacctgg accttttcag gcttgtactc
     1801 cagactgctc caccttcaag agacctgatt ctgaaagcat cctcctcaaa gatttctgac
     1861 atcaggaagc cctgcctacc ctggccagta cattcccttt gctaaatggc agagctccag
     1921 cacaggaata cagatgcagg catctgagtc tccagtggac accggacaca gtgcgaatgg
     1981 gcgggctgga ggctgagcac cgtctggcca cttctttttt tggttctttt tttcggagct
     2041 ggggaccgaa cccagggcct tgtgcttgct aggcaagcgc tctaccactg agctaaatcc
     2101 ccaacccctg tctggccact tcttaagcag gtatttatcc agcatctgcc ctgttcacag
     2161 gagttaaggt cactttttct ctcagtagac agaggatgac atggaaccat cagaggccag
     2221 ccacttttgc aaattgtgaa atagtctgaa attctatgat atatataaaa ccatataata
     2281 ggaa
//
