LOCUS       NM_001393812            2211 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus major facilitator superfamily domain containing
            13A (Mfsd13a), transcript variant 1, mRNA.
ACCESSION   NM_001393812 XM_006231506
VERSION     NM_001393812.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2211)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Mar 16, 2021 this sequence version replaced XM_006231506.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.5592.1,
                                           SRR26360190.3265402.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-62                JAXUCZ010000001.1  255160493-255160554
            63-279              JAXUCZ010000001.1  255169214-255169430
            280-362             JAXUCZ010000001.1  255169875-255169957
            363-815             JAXUCZ010000001.1  255170420-255170872
            816-939             JAXUCZ010000001.1  255170979-255171102
            940-1036            JAXUCZ010000001.1  255172405-255172501
            1037-1208           JAXUCZ010000001.1  255174466-255174637
            1209-1402           JAXUCZ010000001.1  255174715-255174908
            1403-2211           JAXUCZ010000001.1  255176923-255177731
FEATURES             Location/Qualifiers
     source          1..2211
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q54"
     gene            1..2211
                     /gene="Mfsd13a"
                     /gene_synonym="RGD1309313; Tmem180"
                     /note="major facilitator superfamily domain containing
                     13A"
                     /db_xref="GeneID:309454"
                     /db_xref="RGD:1309313"
     exon            1..62
                     /gene="Mfsd13a"
                     /gene_synonym="RGD1309313; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     exon            63..279
                     /gene="Mfsd13a"
                     /gene_synonym="RGD1309313; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     CDS             112..1665
                     /gene="Mfsd13a"
                     /gene_synonym="RGD1309313; Tmem180"
                     /codon_start=1
                     /product="transmembrane protein 180"
                     /protein_id="NP_001380741.1"
                     /db_xref="GeneID:309454"
                     /db_xref="RGD:1309313"
                     /translation="MGLDWPPAWLLGLPTAVVYGSLAFFTTILHNVFLLYYVDTFVSV
                     YKINKVSFWVGETVFLLWNSFNDPLFGWLSDRRFLSSQPRSGAGLSSRDVVLTRVRAL
                     GWHGPLLALSFLAFWVPWAPAGLQFLLCLCLYDGFLTLVDLHHHALLADLALSAHDRT
                     HLNFYCSLFSAAGAMSVFASYAFWNKEDFSSFRAFCVVLAAGSGLGFLGATQLLKRRI
                     EATRKDRGCPGLVMDGGVCEEEPLVGGEEAGSITLGQYLRQLAHHQNFLWFVGMDLVQ
                     VFHCHFNSNFFPLFLEHLLSDHISLSTGSFLLGISYVAPHLNNLYFLPLCRRWGVYAV
                     VRGLLLLKLSLSLLMLLAGPDHPGLLCFFIASNRVFTEGTCKLLTLVVTDLVDEDLVL
                     NHRKQAASALLFGMVALVTKPGQTFAPLLGTWLLCFYTGHDLFQQPPVTSVGSVQPWP
                     EPPAPAPVQAPTLRQGCFYLLVLVPIICALLQLFTWSQFTLHGRRLRMVKAQRQNLAQ
                     IHTLNIKMV"
     exon            280..362
                     /gene="Mfsd13a"
                     /gene_synonym="RGD1309313; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     exon            363..815
                     /gene="Mfsd13a"
                     /gene_synonym="RGD1309313; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     exon            816..939
                     /gene="Mfsd13a"
                     /gene_synonym="RGD1309313; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     exon            940..1036
                     /gene="Mfsd13a"
                     /gene_synonym="RGD1309313; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     exon            1037..1208
                     /gene="Mfsd13a"
                     /gene_synonym="RGD1309313; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     exon            1209..1402
                     /gene="Mfsd13a"
                     /gene_synonym="RGD1309313; Tmem180"
                     /inference="alignment:Splign:2.1.0"
     exon            1403..2211
                     /gene="Mfsd13a"
                     /gene_synonym="RGD1309313; Tmem180"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcactggctg gcacctggct cccccgcagc cgcggaataa gcaatcgtct gccaggactg
       61 cgagacgagg atggtcggag tggcaatggg gctgaggcac cacctgcagc catggggcta
      121 gactggcccc cagcctggct gttgggcctg cccacagccg tggtgtatgg ctccttggct
      181 ttcttcacca ccattctgca taatgtgttt ctgctgtact acgtggacac ctttgtctcg
      241 gtgtataaga tcaacaaagt gtccttctgg gttggagaga ctgtatttct cctctggaat
      301 agcttcaatg accccctctt cggttggctc agtgaccgcc ggttcctcag ctcccagccc
      361 cggtcaggag cagggctctc ctccagagat gtggtgctga cccgggtgcg ggctctgggt
      421 tggcacgggc cactgctggc actgtccttc ctggcattct gggtgccctg ggcccctgct
      481 ggcttacagt tcttactgtg cctgtgcctt tatgatggct tcctgacact cgtggacctc
      541 caccatcatg ccttgctggc cgacctggcg ctctcggccc atgaccgcac ccacctcaac
      601 ttttactgct ccctcttcag tgcagctggc gccatgtctg tctttgcctc ctacgccttt
      661 tggaacaagg aggacttctc ctccttccgt gccttctgtg tggtactagc tgctggctct
      721 gggctgggct ttttgggggc cacacaattg ttgaagcggc ggattgaggc gaccagaaag
      781 gacaggggtt gcccgggcct ggtcatggat ggtggcgtgt gtgaagagga gccgctggtg
      841 ggtggtgagg aagcaggcag cattaccttg ggtcagtatc tccggcaact ggcacaccac
      901 caaaacttcc tgtggttcgt gggcatggac ctggtacagg tgtttcactg ccacttcaac
      961 agtaacttct tccccctctt cctggagcac ttgctgtcgg accacatctc tctctccact
     1021 ggctccttcc tgttgggcat ctcctatgtt gctcctcatc tcaacaacct gtacttcctg
     1081 cccctgtgcc ggcgctgggg tgtctatgcg gtggtgcggg ggcttctcct gctcaagctg
     1141 agcctaagcc tcctcatgct gctggctggc ccagaccacc ctggcctgct ttgcttcttc
     1201 attgccagca accgtgtctt caccgagggt acctgtaagc tgctgaccct cgtggtcact
     1261 gacctggtgg atgaggacct ggtgctgaac catcggaagc aggcagcctc ggcgcttctc
     1321 tttggcatgg tcgccctggt aaccaaaccc ggccagacct ttgccccact gctgggcacc
     1381 tggctgctct gcttctacac aggtcatgac ctttttcagc agcccccagt gacttctgtg
     1441 gggagtgtgc agccatggcc agagccgcca gccccagccc cagtgcaggc tcccacactg
     1501 cgccaaggct gcttctacct gctggtcctc gtccccatca tctgtgcact gctgcagctc
     1561 ttcacctggt cccagttcac actgcatggg agacgcctac gtatggtcaa ggcccagcgt
     1621 cagaacctag ctcagatcca taccctgaac attaagatgg tgtgagacgt ctggcagggc
     1681 cactgtgctg agatcattca ttgccctagt cccagcagta gcctctcttg ccagctagca
     1741 tcctgcttcc tcaccacctc tgggtttaag cccagcgaac agatgatgtc ggggagctcc
     1801 tagggtagaa ccaggagcat caccaaggtc tgcccttctt tagtcacatg actcagcttg
     1861 tgcaagggct gggcgtatgt gctcagggac ctgcagctcc tgtagggcag gaagaaagga
     1921 ccagaaaggg caggactgag tgcggtgccc aggagctgcc tgggacccgt agctggggct
     1981 ggccactcgg tgggctccag ggcttctgat gctgtgactg ccccctttgc ccactcaggt
     2041 gaagctgaaa gtgccacttg cctattctag tagtttctca gagggtcctc tgcttcagct
     2101 atgctggaag tggcatgccc cctctactgc agggctcccc aaagcccagc aggcctccaa
     2161 acgctaaaga ggctcatctc atttcaaatc aagtaaagcc agccattccg a
//
