LOCUS       NM_001191680            1960 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus major facilitator superfamily domain containing
            10 (Mfsd10), transcript variant 1, mRNA.
ACCESSION   NM_001191680 XM_006251243 XM_223533
VERSION     NM_001191680.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1960)
  AUTHORS   Cheng,L.C., Baboo,S., Lindsay,C., Brusman,L.,
            Martinez-Bartolome,S., Tapia,O., Zhang,X., Yates,J.R. 3rd and
            Gerace,L.
  TITLE     Identification of new transmembrane proteins concentrated at the
            nuclear envelope using organellar proteomics of mesenchymal cells
  JOURNAL   Nucleus 10 (1), 126-143 (2019)
   PUBMED   31142202
REFERENCE   2  (bases 1 to 1960)
  AUTHORS   Ushijima,H., Hiasa,M., Namba,T., Hwang,H.J., Hoshino,T., Mima,S.,
            Tsuchiya,T., Moriyama,Y. and Mizushima,T.
  TITLE     Expression and function of TETRAN, a new type of membrane
            transporter
  JOURNAL   Biochem Biophys Res Commun 374 (2), 325-330 (2008)
   PUBMED   18638446
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On or before Oct 3, 2022 this sequence version replaced
            XM_006251243.4, NM_001191680.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643291.35721.1,
                                           SRR26643294.50355.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-222               JAXUCZ010000014.1  80328434-80328655
            223-415             JAXUCZ010000014.1  80328790-80328982
            416-512             JAXUCZ010000014.1  80329069-80329165
            513-616             JAXUCZ010000014.1  80329410-80329513
            617-775             JAXUCZ010000014.1  80329758-80329916
            776-937             JAXUCZ010000014.1  80329998-80330159
            938-1046            JAXUCZ010000014.1  80330377-80330485
            1047-1158           JAXUCZ010000014.1  80330576-80330687
            1159-1267           JAXUCZ010000014.1  80330831-80330939
            1268-1358           JAXUCZ010000014.1  80331034-80331124
            1359-1406           JAXUCZ010000014.1  80331208-80331255
            1407-1496           JAXUCZ010000014.1  80331330-80331419
            1497-1960           JAXUCZ010000014.1  80331521-80331984
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q21"
     gene            1..1960
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /note="major facilitator superfamily domain containing 10"
                     /db_xref="GeneID:305449"
                     /db_xref="RGD:1311900"
     exon            1..222
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            223..415
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /inference="alignment:Splign:2.1.0"
     CDS             242..1612
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /note="tetracycline transporter-like protein"
                     /codon_start=1
                     /product="major facilitator superfamily domain-containing
                     protein 10"
                     /protein_id="NP_001178609.1"
                     /db_xref="GeneID:305449"
                     /db_xref="RGD:1311900"
                     /translation="MGWAGDAGCTPRPPIRPRLASERRVIIVIFLGLLLDLLAFTLLL
                     PLLPGLLERHGREQDPLYGSWQRGVDWFATAIGMPAEKRYNSVLFGGLIGSAFSLLQF
                     FSAPLTGAASDYLGRRPVMMMSLTGLAISYAVWATSRSFTAFLASRVIGGISKGNVNL
                     STAIVADLGSPPTRSQGMAVIGVAFSLAFTLGPMLGAFLSVEMVPWISLLFAVSDMLF
                     IFCFLPETLPQEKRASSVTLGFHTAANLLSPLALLRFAAVAHSQDPPTEDGLRNLRRL
                     GLVYFLYLFLFSGLEYTLSFLTHQRFQFSSLQQGKMFFFIGLTMATIQGTYARRIRPG
                     KEAAAVKRAMLLLVPAFLLIGWGHSLPMLGLGLMLYSFAAAVVVPGLSTMVSSYGSPG
                     QKGTIMGILRSLGALGRAVGPIMAASVYWLTGAQVCFTMCSALFLLPFLLLQKLQHPA
                     QTLKEE"
     exon            416..512
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            513..616
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            617..775
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            776..937
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            938..1046
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            1047..1158
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            1159..1267
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            1268..1358
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            1359..1406
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            1407..1496
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /inference="alignment:Splign:2.1.0"
     exon            1497..1960
                     /gene="Mfsd10"
                     /gene_synonym="RGD1311900; Tetran"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtccatccac ccgtttgtcc ccgccaggag cctcagcaca cgtgcacagg tcccaggtgg
       61 gtggataaga agcaagggct tggatttcgc ctgaggaggc caaagtggca cacgaacagg
      121 tgctctgggc gcctgcgact cctcctccgt cttctccccg ttacccgctt cgcaacaggg
      181 ggcgccctga ccactgcggc cctgagctta ctgctaccct agcagggtcg gagtttccac
      241 aatgggatgg gcaggggatg caggctgtac gcctcgtccg cctatacggc ctcggctcgc
      301 gtccgagcgc cgcgtgatca tcgtgatctt cctcggcctg ctactcgacc tcctggcgtt
      361 cacactgttg ctgcctctgc tgcctggact gcttgagagg cacggccgcg aacaagaccc
      421 cctctatggc tcctggcagc gtggggtaga ctggtttgcc acagccatcg ggatgccagc
      481 ggagaagagg tacaacagcg tcctgttcgg aggtctcatc ggctcagcct tctccctcct
      541 gcagttcttc tctgcaccac tcacaggagc tgcctctgat tacctgggga ggcgcccagt
      601 gatgatgatg tccctgacag gtttggccat ctcctatgct gtgtgggcta cctctcggag
      661 ctttacggcc ttcttggcct ccagagtaat aggaggcatc agcaagggga acgttaacct
      721 ctccacagcc attgttgctg acctgggctc acctccgacc cgcagccaag gcatggcagt
      781 cattggggta gccttctccc tggcctttac tctgggtccc atgctcggag cattcctgtc
      841 tgtggaaatg gttccctgga tcagcctact ctttgccgtc tccgacatgt tgttcatctt
      901 ctgcttcttg ccggagacac tgccccagga aaagcgggca tcttctgtca ccttgggctt
      961 ccacactgct gccaacctgc tcagccccct ggccctgctt cgttttgcag ctgtagctca
     1021 cagtcaggat ccacctactg aagacgggct cagaaactta cgccgtttgg gtctcgtcta
     1081 cttcctctac ctcttcctgt tctcgggcct ggagtacacg ctcagcttcc ttacacacca
     1141 gcgcttccag ttcagcagcc tgcagcaggg caagatgttt ttcttcatcg gcctcaccat
     1201 ggccaccata cagggcacct acgcccggcg gatccgccct ggcaaggaag ctgcagccgt
     1261 gaagcgggca atgttgctgc tggtaccagc cttcctctta atcggctggg ggcactcact
     1321 gcctatgttg ggcttgggac tgatgctcta ctccttcgct gccgctgttg tagtgcctgg
     1381 tctgtccacc atggtctcca gctatggttc tccaggacaa aaaggcacaa tcatgggcat
     1441 actgcggagt ctaggtgccc taggtagggc ggtggggccc ataatggccg cctcagtgta
     1501 ctggctgact ggggcccagg tctgtttcac catgtgctcc gcgctcttcc tgctgccctt
     1561 cttactcctg cagaagctgc agcatccagc acagactctc aaggaggagt agctgagccg
     1621 tcctgctgcg aagcgggagc ctgggccagg accactccac tcctagcaca ctccttcctc
     1681 agggcccagg gaggcctgcc acattcctcc tctcaggatg gcaacccagc aggaagtctg
     1741 ggcagccacg tccttttttt tttttttttt ttttggttct ttttttcgga gctggggacc
     1801 gaacccaggg ccttgcgctt cctaggtaag cgctctacca ctgagctaaa tccccagccc
     1861 cagccacgtc cttttcttac tccaaagcct tttaggcttc tgattttttt aatctctcat
     1921 tcttctgaat gaccaaataa agcagctgtt ttgtaccaag
//
