LOCUS       NM_001191964            1871 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus microfibrillar-associated protein 1A (Mfap1a),
            mRNA.
ACCESSION   NM_001191964 XM_575221
VERSION     NM_001191964.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1871)
  AUTHORS   Bertram,K., Agafonov,D.E., Dybkov,O., Haselbach,D., Leelaram,M.N.,
            Will,C.L., Urlaub,H., Kastner,B., Luhrmann,R. and Stark,H.
  TITLE     Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for
            Activation
  JOURNAL   Cell 170 (4), 701-713 (2017)
   PUBMED   28781166
REFERENCE   2  (bases 1 to 1871)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1871)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1871)
  AUTHORS   Horrigan,S.K., Rich,C.B., Streeten,B.W., Li,Z.Y. and Foster,J.A.
  TITLE     Characterization of an associated microfibril protein through
            recombinant DNA techniques
  JOURNAL   J Biol Chem 267 (14), 10087-10095 (1992)
   PUBMED   1374398
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000003.1.
            
            On Jul 17, 2010 this sequence version replaced XM_575221.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.18086.1,
                                           SRR26643297.12743.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676810 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-198               JAXUCZ010000003.1  128910263-128910460 c
            199-418             JAXUCZ010000003.1  128907180-128907399 c
            419-548             JAXUCZ010000003.1  128903734-128903863 c
            549-736             JAXUCZ010000003.1  128903175-128903362 c
            737-1006            JAXUCZ010000003.1  128900461-128900730 c
            1007-1166           JAXUCZ010000003.1  128896887-128897046 c
            1167-1256           JAXUCZ010000003.1  128894578-128894667 c
            1257-1871           JAXUCZ010000003.1  128893880-128894494 c
FEATURES             Location/Qualifiers
     source          1..1871
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q35"
     gene            1..1871
                     /gene="Mfap1a"
                     /gene_synonym="RGD1562232"
                     /note="microfibrillar-associated protein 1A"
                     /db_xref="GeneID:499878"
                     /db_xref="RGD:1562232"
     exon            1..198
                     /gene="Mfap1a"
                     /gene_synonym="RGD1562232"
                     /inference="alignment:Splign:2.1.0"
     CDS             120..1439
                     /gene="Mfap1a"
                     /gene_synonym="RGD1562232"
                     /codon_start=1
                     /product="microfibrillar-associated protein 1"
                     /protein_id="NP_001178893.1"
                     /db_xref="GeneID:499878"
                     /db_xref="RGD:1562232"
                     /translation="MSVPSALMKQPPIQSTAGAVPVRNEKGEISMEKVKVKRYVSGKR
                     PDYAPMESSDEEDEEFQFIKKAKEQEAEPEEQEEDSSSDPRLRRLQNRISEDVEERLA
                     RHRKIVEPEVVGESDSEVEGDAWRLEREDSSEEEEEEIDDEEIERRRGMMRQRAQERK
                     NEEMEVMEVEDEGRSGEESESESEYEEYTDSEDEMEPRLKPVFIRKKDRVTVQEREAE
                     ALRQKELEQEAKRMAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDENDEEEY
                     EAWKVRELKRIKRDREDREALEKEKAEIERMRNLTEEERRAELRANGKVITNKAVKGK
                     YKFLQKYYHRGAFFMDEDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKYT
                     HLVDQDTTSFDSAWGQESAQNTKFFKQKAAGVRDVFERPSAKKRKTT"
     exon            199..418
                     /gene="Mfap1a"
                     /gene_synonym="RGD1562232"
                     /inference="alignment:Splign:2.1.0"
     exon            419..548
                     /gene="Mfap1a"
                     /gene_synonym="RGD1562232"
                     /inference="alignment:Splign:2.1.0"
     exon            549..736
                     /gene="Mfap1a"
                     /gene_synonym="RGD1562232"
                     /inference="alignment:Splign:2.1.0"
     exon            737..1006
                     /gene="Mfap1a"
                     /gene_synonym="RGD1562232"
                     /inference="alignment:Splign:2.1.0"
     exon            1007..1166
                     /gene="Mfap1a"
                     /gene_synonym="RGD1562232"
                     /inference="alignment:Splign:2.1.0"
     exon            1167..1256
                     /gene="Mfap1a"
                     /gene_synonym="RGD1562232"
                     /inference="alignment:Splign:2.1.0"
     exon            1257..1871
                     /gene="Mfap1a"
                     /gene_synonym="RGD1562232"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtttctgtc agtcgcgcag tagtgtaggg caaagcttgg tgggaagcgg tattttgttt
       61 cttgctcttc gttgttgaga ttcaatccgt tttacagaat ctctgcggca gccgtcacca
      121 tgtcggtccc aagcgcactc atgaagcagc cgcccattca gtctacggct ggggccgtcc
      181 cagttcgcaa tgagaaaggt gagatctcaa tggaaaaagt gaaggtaaaa cgttatgtgt
      241 ccggaaaaag accagattat gcccctatgg agtcctcaga tgaagaggat gaagaatttc
      301 agttcattaa gaaagctaag gaacaagaag cagagcctga ggaacaggag gaggattcat
      361 ccagtgaccc ccgacttcgg cggttacaga accgcatcag tgaagatgtg gaagagaggt
      421 tggctcgaca cagaaaaata gtggaacctg aagtagtggg agaaagtgac tcagaagtag
      481 aaggagatgc ttggcgcctg gaacgagaag atagcagtga ggaagaggag gaggaaatcg
      541 atgacgaaga aatagagcgg cgccgcggca tgatgcggca gcgagcacag gagaggaaaa
      601 atgaagagat ggaggtcatg gaggtggaag atgaaggacg ctctggggag gagtccgagt
      661 cagagtctga gtatgaggag tacacagaca gtgaagatga aatggagcct cgacttaagc
      721 ctgtcttcat tcgaaagaag gatcgtgtga cagttcaaga acgagaagct gaggcattga
      781 gacagaagga attggagcag gaagcaaaac gcatggctga ggagcggcgc aagtacaccc
      841 tcaagattgt agaagaagag accaagaaag agctggagga gaacaagcgg tcccttgccg
      901 ccctggatgc actcaataca gatgatgaaa atgacgagga ggagtatgag gcgtggaaag
      961 tccgagagct caaaagaatc aagcgggaca gagaggaccg agaagcgctt gaaaaggaga
     1021 aagcagaaat tgaacgcatg agaaacctga ctgaggaaga aaggcgggct gaacttcggg
     1081 caaatggcaa agtcattacc aacaaagctg ttaaaggcaa atacaagttt ctacaaaagt
     1141 attatcaccg aggtgccttc ttcatggatg aggatgaaga agtctacaag agagatttta
     1201 gtgcacctac tctcgaggac catttcaata aaaccattct tccaaaagtc atgcaggtca
     1261 agaattttgg acggtctggt cgcaccaagt acacccacct tgtggatcaa gataccactt
     1321 cttttgactc tgcatggggc caagagagtg cccagaacac aaaattcttt aaacaaaagg
     1381 ccgcaggggt acgagatgta tttgaacggc catctgccaa gaagaggaaa accacctagg
     1441 cttctactac tttcaatgga agggcacagg ggatctggtc ctcagctctt gagccattat
     1501 ttatatagtt cctgtataga gcttttcagg cttgcggcca taacttgtgt ttggaggtgc
     1561 tttgtaagag gtttggactc ataccaagaa atccacagaa aagtactaac cagataggat
     1621 ttgaggcttc ccacttaaaa ctattcctga gaaaccttag gtttctctac cttggcttcc
     1681 catattgact tgggactatt ctgagtttgt ttttccagcc tggatcagat acctggacat
     1741 ctgagtggat ggcacattac ctcttcctta gggttaggag tcggctatca ggaaatccaa
     1801 gcgcagccca acctgttttc gcatttgggg tgctgaatct acttttctaa gtaaatatgc
     1861 ttttcgacgt g
//
