LOCUS       NM_001399699            3199 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus mex-3 RNA binding family member D (Mex3d), mRNA.
ACCESSION   NM_001399699 XM_039080449
VERSION     NM_001399699.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3199)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 3199)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 3199)
  AUTHORS   Donnini,M., Lapucci,A., Papucci,L., Witort,E., Jacquier,A.,
            Brewer,G., Nicolin,A., Capaccioli,S. and Schiavone,N.
  TITLE     Identification of TINO: a new evolutionarily conserved BCL-2
            AU-rich element RNA-binding protein
  JOURNAL   J Biol Chem 279 (19), 20154-20166 (2004)
   PUBMED   14769789
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jan 13, 2022 this sequence version replaced XM_039080449.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.38025.1,
                                           SRR26643288.28955.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-927               JAXUCZ010000007.1  9976253-9977179
            928-3199            JAXUCZ010000007.1  9981112-9983383
FEATURES             Location/Qualifiers
     source          1..3199
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..3199
                     /gene="Mex3d"
                     /gene_synonym="Rkhd1"
                     /note="mex-3 RNA binding family member D"
                     /db_xref="GeneID:299613"
                     /db_xref="RGD:1310576"
     exon            1..927
                     /gene="Mex3d"
                     /gene_synonym="Rkhd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             168..2327
                     /gene="Mex3d"
                     /gene_synonym="Rkhd1"
                     /note="ring finger (C3HC4 type) and KH domain containing
                     1; mex-3 homolog D"
                     /codon_start=1
                     /product="RNA-binding protein MEX3D"
                     /protein_id="NP_001386628.1"
                     /db_xref="GeneID:299613"
                     /db_xref="RGD:1310576"
                     /translation="MPGSTGQPDAGGTGTGTTAGDPGHPHPALAGAEDAAPRPPPEPD
                     DAAAALRLALDQLSALGLGDARPGDEGMATRSADGATERGEDEPVPPDELEAAVAPPV
                     TGAPSMGVGPSMAVAPSVTCAPSMALAPSVTSAASMAVAPSVTCAPCMAVAPSVTVAP
                     SMALTPSVTLAPTMAVASPVAPGGLPLLDPDVSPRPSPPDVFASFAPHPAALGPSTLL
                     AEQLNVIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEE
                     PVFIVTGRKEDVEMAKREILSAAEHFSLIRATRSKAGGLSGATPGPPNLPGQTTIQVR
                     VPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAH
                     ITLRTGAFTDAGPDSDFHANGTDVCLDLLGAAASLWAKAPHPGRRPPTATGGLRGDNA
                     LGAASTPEPFYVGSRGGPALPDPSPSSPYGGSGNGGFTFGGDGPGAPTGTTTPEDCDF
                     GFDFLALDLTVPATATIWAPFERAAPLPAFSGCPTVNGAPAQPNTGTRRSSGGGGAAT
                     TPRHSPTLPEPGGLSLELPLARRGVPDPVGAVPWRPPQSTLPPFSGSTTFSTTPSLPS
                     TTPASSTMDTVPSEGNHKPSTTAANSSASAAAPGPPAAALARECVVCSEGEAMAALVP
                     CGHNLFCMDCAVRICGKSEPECPACRTPATQAIHIFS"
     exon            928..3199
                     /gene="Mex3d"
                     /gene_synonym="Rkhd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccgccagcc ccgccacagc gccaccgccc cgcagccccg cgtccccgca gcatccccgc
       61 gccgccgtcc ccgccccgcc gctggatgcc ggcggccggc ggccgagctc gcagacgcgg
      121 agggcggcgc gggcggcggc ggcggcgcgg gcccgagcgc taaagccatg ccgggctcca
      181 ccgggcagcc cgacgcgggc ggcacgggaa ccgggaccac cgccggcgac cccggtcatc
      241 cgcaccctgc actcgcagga gccgaggatg ccgcgccccg gccgccaccc gagcccgacg
      301 acgcggccgc tgcgctgcgc ctggcgctgg accagctgtc cgcgctcggg ctgggggacg
      361 cgcgccccgg agacgagggg atggcgacac gcagcgcgga cggggcgaca gaacgcggag
      421 aggatgagcc cgtgcccccc gacgagctcg aggcggccgt ggcgcccccg gtgactggtg
      481 cgccctcgat gggcgtggga ccctctatgg ccgtggcacc ctcggtgact tgtgcaccct
      541 cgatggccct ggcaccgtcg gtgaccagtg cagcctccat ggccgtggca ccctcggtga
      601 cttgtgcacc ctgcatggct gtggcaccat cggtgaccgt ggcaccctcg atggcactga
      661 caccctcggt gaccctggca cccacgatgg ccgtggcttc cccggtggcc cccggcgggc
      721 tgcctcttct ggaccccgac gtgagccctc ggccatctcc cccagacgtg ttcgccagct
      781 tcgcgccaca cccggctgcc ctgggtccct cgacgctgct ggctgaacag ttgaacgtga
      841 tcggcagtcg caagaaaagc gtgaacatga ccgaatgtgt gccggtgccc agctcggagc
      901 atgtcgcaga gatcgtgggt cgtcaggggt gcaagatcaa ggccctgcgt gccaagacca
      961 atacctacat caagactccg gtgcgcggtg aggagccggt cttcatcgtg accgggcgaa
     1021 aggaggatgt agagatggcc aagcgcgaga tcctgtcagc cgctgagcac ttctcactaa
     1081 tccgagccac acgtagcaag gcgggcgggc tgtcgggggc cactccgggc ccccccaacc
     1141 tgccgggcca gaccaccatc caggtgcgcg tgccctaccg tgtggtgggg ctggtggtgg
     1201 ggccaaaggg tgccaccatc aaacggatcc agcaaaggac acacacgtac atcgtgactc
     1261 ccgggcgtga caaggagcca gtgttcgctg tgaccgggat gccagagaac gtggaccgtg
     1321 cgcgggaaga gatcgaagcg cacatcacgc tgcgcacggg ggccttcact gatgcgggcc
     1381 ccgacagcga cttccacgcc aatggtaccg atgtgtgtct agacctgctg ggagctgcag
     1441 ccagcctctg ggccaaggcc ccccacccag gacggaggcc ccccacagcc accggcgggc
     1501 ttcgagggga taacgccctg ggcgcagcca gcacccctga gcccttctat gtgggcagcc
     1561 gtggagggcc ggcactgccc gatccgagtc ccagcagccc ctacgggggc tcgggcaacg
     1621 ggggcttcac atttggtggg gacggtcccg gtgccccaac agggacaacc accccagagg
     1681 actgtgactt tggctttgac ttcctggcgc tagacctgac cgtgcctgcc acggctacca
     1741 tttgggcccc cttcgagaga gccgcgcccc tgccagcctt cagcggctgc cccacagtta
     1801 atggggcgcc cgcacaaccc aacacaggca cacggcgcag cagcggcggc ggcggggccg
     1861 ctaccacacc acgccactca ccgacactgc ccgagccagg agggctgagc ctggagctgc
     1921 cgctggcacg gcgaggtgtc ccagatccag tgggtgctgt gccttggcga cccccgcaga
     1981 gcacgctgcc acccttctcc ggcagcacca ccttctccac gaccccctct ctgcccagta
     2041 cgaccccggc gtcctccacc atggacactg tcccctcgga gggcaaccac aagccatcta
     2101 ccacagcagc gaactcctct gcctctgcgg cagctcctgg cccgcccgcg gcagccttgg
     2161 ctcgtgagtg tgtggtgtgc tctgaaggcg aggccatggc tgcgttggtc ccctgtggcc
     2221 acaacctctt ctgcatggat tgtgctgtcc gcatctgcgg gaagagtgaa ccagagtgtc
     2281 ccgcctgccg cacgccggct acccaagcca ttcatatctt ttcctagtgt acccctactt
     2341 gaccgggcgg ccatggctct ccaggcagga ggccctctgg cctccgggtg ggagaggtgg
     2401 tgaagtgggg cgtgggctgc agggcggtgg ggaggagggg gcccacgcgt gtgtgtgtcg
     2461 caaacagctt taactcctgc agcagacgtc gaggccatca gcttgaggcc cagcggcagc
     2521 gcctccgttc ttgacaagtg acagtattga gtgtgccggt gacaataaac cggaaaattc
     2581 tctgtttgca ctttttatta agacgcccct ccccatttcc ggggtgatct taaaacaaaa
     2641 aataacacga tatttacagc tctcactgga tttgacagtg tggattcttg tagaaacttc
     2701 aaaaggcagg cggctccccc cacccccaac acactccctt tttttggggc aaatatatac
     2761 cattttgtac atcagccaca gagtggccaa gaggagggta atgggagggt atccaagggg
     2821 ggtcccatca acagatttat aacttttgtt tgattgtggt tcttttgttt ttaaattaag
     2881 actcagtgtt gcggttcttt ttttttttgt tgttgttttt taaaaaggtt tttaaagttt
     2941 tttttttaat tgttattttt acttcatact ccctgtgtat atgtagggaa tttatattag
     3001 atatatgtac tttacggaat aaattttaag aactaaaata tattttattt taaataaagc
     3061 aacggacctt taatctttga cagcttaaat cactgattat atatttgctg aactgattta
     3121 agggtttaaa aacattgtat ccagagtttt atttttggac ttgaaagcct tcttaataaa
     3181 gttgttttcc tatatgtaa
//
