LOCUS       NM_001024981            2026 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus methyltransferase 15, mitochondrial 12S rRNA
            N4-cytidine (Mettl15), mRNA.
ACCESSION   NM_001024981 XM_230369
VERSION     NM_001024981.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2026)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC091215.1.
            
            [WARNING] On Jul 17, 2024 this sequence was replaced by
            NM_001024981.2.
            
            On Jun 25, 2005 this sequence version replaced XM_230369.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091215.1, CO555239.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676810 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2026
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q34"
     gene            1..2026
                     /gene="Mettl15"
                     /gene_synonym="RGD1304978"
                     /note="methyltransferase 15, mitochondrial 12S rRNA
                     N4-cytidine"
                     /db_xref="GeneID:295985"
                     /db_xref="RGD:1304978"
     exon            1..34
                     /gene="Mettl15"
                     /gene_synonym="RGD1304978"
                     /inference="alignment:Splign:2.1.0"
     exon            35..321
                     /gene="Mettl15"
                     /gene_synonym="RGD1304978"
                     /inference="alignment:Splign:2.1.0"
     CDS             52..912
                     /gene="Mettl15"
                     /gene_synonym="RGD1304978"
                     /note="probable methyltransferase-like protein 15;
                     methyltransferase like 15"
                     /codon_start=1
                     /product="12S rRNA N4-methylcytidine (m4C)
                     methyltransferase"
                     /protein_id="NP_001020152.1"
                     /db_xref="GeneID:295985"
                     /db_xref="RGD:1304978"
                     /translation="MLRYPYFCRTYNRLFSYFVDSGAFNLDVCPHTIHTTAAMHTEYK
                     ASEGIALCDTQKVYRSEETDSEAMAKLHIPVMVDEVVQCLTPQKGQVFLDMTFGSGGH
                     SKAILQKEPDVTVYALDRDPVAFTLAERLSEMYPTQIHAMLGQFSQAETLLMKAGVQP
                     GTVDGVLLDLGCSSMQLDAPERGFSLRKDGPLDMRMDGDRYPDMPTAADVVNALDQQA
                     LASILRAYGEEKHAKKIASAIIQARSTYPISRTQQLASIVAGTLFKSLCCLRLTSSIN
                     MHCMYICIYI"
     exon            322..458
                     /gene="Mettl15"
                     /gene_synonym="RGD1304978"
                     /inference="alignment:Splign:2.1.0"
     exon            459..650
                     /gene="Mettl15"
                     /gene_synonym="RGD1304978"
                     /inference="alignment:Splign:2.1.0"
     exon            651..1999
                     /gene="Mettl15"
                     /gene_synonym="RGD1304978"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttaaaggct gactgaggac tctttttgcc tcagatttct tgacctacag aatgcttcga
       61 tatccatatt tttgcagaac gtataataga ctgttttcat actttgtgga ttctggtgca
      121 tttaatttgg atgtctgtcc ccacacaatc cacactacag cagcaatgca tactgaatat
      181 aaagcctcgg aagggatagc tctgtgtgat actcagaagg tatatagatc tgaagagacg
      241 gattctgaag ccatggctaa attacatatc ccagtaatgg tggatgaagt tgttcagtgc
      301 ttgacaccac aaaagggaca ggtttttcta gatatgacgt ttggctcagg aggacacagc
      361 aaagccattc tgcagaagga accagatgtt actgtctatg ccttagaccg cgaccccgtg
      421 gctttcactc tggctgagcg gctttcagaa atgtacccga cacagatcca tgcaatgctg
      481 ggccagttca gccaggcaga gactttgcta atgaaagctg gagtgcagcc agggactgtt
      541 gatggggtcc ttttagatct ggggtgttca tccatgcaac ttgatgctcc tgaacgaggt
      601 ttctcccttc ggaaagatgg ccccttggac atgaggatgg acggagacag gtaccctgac
      661 atgcccactg ctgccgatgt tgtgaatgct ttagatcaac aagcgcttgc gtccatccta
      721 agagcatatg gagaggagaa acatgccaaa aaaattgctt ctgcgatcat tcaagcacgc
      781 agcacatacc ctatctctag aacccagcaa cttgccagca ttgttgcagg tacccttttt
      841 aagtctctgt gctgcctaag attaacaagt tcaatcaata tgcattgcat gtatatatgt
      901 atatatatat aatttcatat ataatgtatt gcacatatat aatacatata taatggtacc
      961 gtgtgtgtgt gtgtatgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt atgcctttct
     1021 gtcccagagg gattcatttg tatatgaaat cattcagaac agagaacaga gtccttcata
     1081 tccttctcaa gaatcaggac tctttttctt tatttttaaa ctttcccact ccagcaactc
     1141 taacaccaca tggggtattt taaaagcttc atcataggcg tctgattaag atgatagaaa
     1201 ttttatacat gcgaacttat catttgcact gaccaaggtg aaacatggaa caaggtttaa
     1261 agaatgcttt gccccgcccc catggttgat aagcatcctg catgagattt gacgttacct
     1321 ctcatagttt catatttcta cgttttaata tttcaggcaa aaggagaatt gcattgcctg
     1381 actgctaaaa taaacctcag tgactcatac atctattcta aacagtcagg caacagaggg
     1441 tatgtgatgt ataggttact ctgctttgcg gatgctaact aaatcagcct aagggactta
     1501 ttgaagcatt tcatcttctc tgctgttccc caccataaac ctcttgaacc tgactctagc
     1561 taggaggcgc gttattgtgt cccttcattt gaagcccaag ctgtttcaca gccctgttct
     1621 gatgaaagtt tctcaaagca aaactgtaac tcctacagtt acttaacaga attacagtgg
     1681 aaagtcttca tcctgttgga ctaacagaaa caatatatca tttttatata tgaaaaatat
     1741 attaagattg ttttcattct ttcttattaa attatataag taataaataa ataaaaggtg
     1801 tatttatata gtgtttttaa aggagccaga attaactaag gctatgatat tactagatgg
     1861 agtttcagga ataaaacttc attatgaatt cactcaaatc attaagcttt catatagcag
     1921 ttgttttatg gcataattaa gtataattaa aatattgtat tctatttaac atataataaa
     1981 ataaaaagaa ttaaccaaga aaaaaaaaaa aaaaaaaaaa aaaaaa
//
