LOCUS       NM_001009617            1352 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus mesoderm specific transcript (Mest), mRNA.
ACCESSION   NM_001009617
VERSION     NM_001009617.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1352)
  AUTHORS   Gonzalez-Begne,M., Lu,B., Han,X., Hagen,F.K., Hand,A.R.,
            Melvin,J.E. and Yates,J.R.
  TITLE     Proteomic analysis of human parotid gland exosomes by
            multidimensional protein identification technology (MudPIT)
  JOURNAL   J Proteome Res 8 (3), 1304-1314 (2009)
   PUBMED   19199708
REFERENCE   2  (bases 1 to 1352)
  AUTHORS   Nikonova,L., Koza,R.A., Mendoza,T., Chao,P.M., Curley,J.P. and
            Kozak,L.P.
  TITLE     Mesoderm-specific transcript is associated with fat mass expansion
            in response to a positive energy balance
  JOURNAL   FASEB J 22 (11), 3925-3937 (2008)
   PUBMED   18644838
REFERENCE   3  (bases 1 to 1352)
  AUTHORS   Su,D. and Gudas,L.J.
  TITLE     Retinoic acid receptor gamma activates receptor tyrosine kinase
            Tie1 gene transcription through transcription factor GATA4 in F9
            stem cells
  JOURNAL   Exp Hematol 36 (5), 624-641 (2008)
   PUBMED   18439490
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001009617.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC062800.1, SRR26643298.22339.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-281               JAXUCZ010000004.1  60321814-60322094
            282-436             JAXUCZ010000004.1  60324501-60324655
            437-516             JAXUCZ010000004.1  60325966-60326045
            517-594             JAXUCZ010000004.1  60326418-60326495
            595-731             JAXUCZ010000004.1  60326601-60326737
            732-790             JAXUCZ010000004.1  60326889-60326947
            791-831             JAXUCZ010000004.1  60328166-60328206
            832-902             JAXUCZ010000004.1  60328902-60328972
            903-1004            JAXUCZ010000004.1  60329112-60329213
            1005-1081           JAXUCZ010000004.1  60330324-60330400
            1082-1145           JAXUCZ010000004.1  60331255-60331318
            1146-1352           JAXUCZ010000004.1  60332082-60332288
FEATURES             Location/Qualifiers
     source          1..1352
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q22"
     gene            1..1352
                     /gene="Mest"
                     /note="mesoderm specific transcript"
                     /db_xref="GeneID:58827"
                     /db_xref="RGD:1594589"
     exon            1..281
                     /gene="Mest"
                     /inference="alignment:Splign:2.1.0"
     CDS             256..1263
                     /gene="Mest"
                     /note="mesoderm specific transcript homolog"
                     /codon_start=1
                     /product="mesoderm-specific transcript homolog protein"
                     /protein_id="NP_001009617.1"
                     /db_xref="GeneID:58827"
                     /db_xref="RGD:1594589"
                     /translation="MVRRDRLRRMREWWVQVGLLAVPLLAAYLHIPPPQLSPALHSWK
                     TSGKFFTYKGLRIFYQDSVGVVGSPEIVVLLHGFPTSSYDWYKIWEGLTLRFHRVIAL
                     DFLGFGFSDKPRPHQYSIFEQASIVESLLRHLGLQNRRINLLSHDYGDIVAQELLYRY
                     KQNRSGRLTIKSLCLSNGGIFPETHRPLLLQKLLKDGGVLSPILTRLMNFFVFSRGLT
                     PVFGPYTRPTESELWDMWAGIRNNDGNLVIDSLLQYINQRKKFRRRWVGALASVTIPI
                     HFIYGPLDPINPYPEFLELYRKTLPRSTVSILDDHISHYPQLEDPMGFLNAYMGFINS
                     F"
     exon            282..436
                     /gene="Mest"
                     /inference="alignment:Splign:2.1.0"
     exon            437..516
                     /gene="Mest"
                     /inference="alignment:Splign:2.1.0"
     exon            517..594
                     /gene="Mest"
                     /inference="alignment:Splign:2.1.0"
     exon            595..731
                     /gene="Mest"
                     /inference="alignment:Splign:2.1.0"
     exon            732..790
                     /gene="Mest"
                     /inference="alignment:Splign:2.1.0"
     exon            791..831
                     /gene="Mest"
                     /inference="alignment:Splign:2.1.0"
     exon            832..902
                     /gene="Mest"
                     /inference="alignment:Splign:2.1.0"
     exon            903..1004
                     /gene="Mest"
                     /inference="alignment:Splign:2.1.0"
     exon            1005..1081
                     /gene="Mest"
                     /inference="alignment:Splign:2.1.0"
     exon            1082..1145
                     /gene="Mest"
                     /inference="alignment:Splign:2.1.0"
     exon            1146..1352
                     /gene="Mest"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcctcggcca ccagcacatc ccggtgcatc ctcacaggcg cagcagcctt cctctgcggc
       61 agccgcacct cgccacccgg cgtagtgctg caggctcgcc cgagttgccg cttgctgcct
      121 cttttgtcgc tgccgcgggc cgccctgcgg accgtgggct gcgccgaggc catccccgat
      181 cctgtaccgc tgtaggcgcc tcggcgcgcc ctgtgatccg caatcctgcg gcgggcggca
      241 tgggataatg cggccatggt gcgccgagat cgcttgcgca ggatgaggga gtggtgggtc
      301 caagtagggc tcctggctgt gcccttgctg gctgcgtacc tgcacatccc accccctcag
      361 ctctcccctg ctctgcactc atggaagact tctggcaagt ttttcaccta caagggacta
      421 cgcatcttct accaagattc tgtcggcgtg gtgggaagcc ctgagatagt tgtgctttta
      481 catggctttc cgacatccag ctatgactgg tacaagatct gggaagggct gaccctgagg
      541 ttccatcgag tgattgccct ggatttctta ggctttggct tcagtgacaa gccgagacca
      601 catcagtatt ccatatttga gcaggccagc atcgtagagt cccttctgcg gcacctgggg
      661 ctccagaacc gcagaatcaa cctactgtct cacgactatg gggatattgt tgctcaggag
      721 ctgctgtaca ggtacaagca gaatcgttct ggccgtctca ccataaagag tctctgtctg
      781 tcgaatggag gtatctttcc tgagacccat cgtcctctcc ttctccaaaa gctcctcaaa
      841 gacggaggtg tgctttcacc catcctcacc aggctcatga acttctttgt gttctctcga
      901 ggtctcactc cagtctttgg accatatact cgacccactg agagtgagct gtgggacatg
      961 tgggctggga ttcgcaacaa tgacgggaac ctggtcattg acagtctttt acagtacatc
     1021 aatcaaagga agaaatttag aagacgctgg gtgggagcac ttgcttctgt gaccatcccc
     1081 attcatttta tctatgggcc attggatcct ataaatccgt atccagagtt tttggagctg
     1141 tacaggaaaa cgctgccgcg gtccacagtg tcgattctgg atgaccacat tagccactac
     1201 ccacagctag aggatcccat gggcttcttg aatgcatata tgggcttcat caactccttc
     1261 tgagctggaa agagtagctt ccctgtatta cctcccccat tctcgtatct gtgtgtattc
     1321 cacttagaaa tgccccaaag aggtcctggt ca
//
