LOCUS       XM_039104936            2747 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Meis homeobox 2 (Meis2), transcript
            variant X1, mRNA.
ACCESSION   XM_039104936
VERSION     XM_039104936.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104936.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2747
                     /gene="Meis2"
                     /note="Meis homeobox 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 18 ESTs, 2 long
                     SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 37 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:311311"
                     /db_xref="RGD:1305198"
     CDS             69..1559
                     /gene="Meis2"
                     /codon_start=1
                     /product="homeobox protein Meis2 isoform X1"
                     /protein_id="XP_038960864.1"
                     /db_xref="GeneID:311311"
                     /db_xref="RGD:1305198"
                     /translation="MPNIPNATQLGRSQEEWWGNKREYDELPHYGGMDGVGVPASMYG
                     DPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMPASMGSAVNDALKRDKDAIYGH
                     PLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQVRAEKPLFSSNP
                     ELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERDGSSKSD
                     HEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLDN
                     SVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQD
                     TGLTILQVNNWFINARRRIVQPMIDQSNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDG
                     QQHMGIRPAGLQSMPGDYVSQGGPVGMGMAQPSYTPPQMTPHPTQLRHGPPMHSYLPS
                     HPHHPAMMMHGGPPTHPGMTMSAQSPTMLNSVDPNVGGQVMDIHAQ"
ORIGIN      
        1 ccggacctag taatccgcca gcagaggaag ggggccgcgg aattaaaacg aacaaaagct
       61 agagcgccat gccaaacatc cccaacgcga cccagttagg caggagccaa gaggagtggt
      121 ggggaaataa acgagaatac gatgagctgc cccattacgg cgggatggac ggagtagggg
      181 ttcctgcttc catgtacgga gaccctcacg cgccgcggcc gattcccccg gttcaccacc
      241 taaaccacgg gccgccgctc cacgccacgc agcactacgg cgcgcacgcc ccgcacccca
      301 atgtcatgcc agccagcatg ggatctgctg tcaacgacgc cttgaagaga gacaaggacg
      361 cgatctacgg gcacccgttg tttcctctgt tagcgctggt ctttgagaag tgcgagctgg
      421 cgacttgcac tccccgggaa cccggagtgg ccggcggaga cgtctgttcc tctgactcct
      481 tcaacgagga catcgcggtc ttcgccaagc aggttcgcgc cgaaaagcct cttttttcct
      541 caaatccaga gctggataat ttgatgatac aagcaataca agtgctaagg tttcatcttc
      601 tggagttaga aaaggtccac gaactgtgtg ataacttctg ccaccggtac attagctgtt
      661 tgaaggggaa aatgcccatt gacctcgtga ttgatgagag agacggaagc tccaagtcag
      721 atcatgaaga actttcaggc tcctccacaa atctcgccga ccacaaccct tcatcctggc
      781 gagaccacga tgatgcaacc tcaactcact cagcaggcac cccaggaccc tccagcgggg
      841 gccatgcttc ccagagtgga gacaacagca gtgagcaagg cgacgggcta gacaacagtg
      901 tagcttcacc tggcacaggt gatgacgacg atccagacaa ggacaaaaaa cgccagaaga
      961 aaagaggcat attccccaaa gtcgcgacaa atatcatgag agcgtggctc ttccagcatc
     1021 tcacacaccc gtacccttca gaagagcaga agaagcagtt agcacaagac acggggctga
     1081 caattctgca agtgaacaac tggtttatta atgccagaag aagaatagta cagcccatga
     1141 ttgaccagtc aaatcgagca ggttttcttc ttgatccttc agtgagccaa ggagcagcgt
     1201 atagtccaga gggtcagcct atggggagct ttgtattgga tggtcagcaa cacatgggga
     1261 tccggcccgc aggtttgcag agcatgccag gggactacgt ttctcagggt ggtccagtgg
     1321 gaatgggtat ggcccagccg agttacactc ctccccagat gaccccacac cctactcagt
     1381 taagacatgg acccccaatg cattcatatt tgccaagcca tccccaccac ccagccatga
     1441 tgatgcacgg aggaccccct acccaccctg gaatgactat gtcagcacag agccccacaa
     1501 tgttaaattc tgtagatccc aatgttggcg gacaggttat ggacattcat gcccaatagt
     1561 ataagggaac tcaaggaaga aggaaacaca cgcaaaaact attgactaag actctccgaa
     1621 ctttgaccag atgtgacact taatatgaaa ctccagacag ctgtgattat tttttacttt
     1681 tgtcattttt catcaagcaa cagaggacca atgggacaag aacacaaatg tgaagcgatg
     1741 ggggtcatcg agacaatttt gtccatgcaa agatcctctg gagaaagact ccgagagtta
     1801 taactactgt agcataaaca tagggactaa gttaaacttg tacatttctg ttgatcactc
     1861 cgttatgttg cctcaaatag ttttagaaga gaaaaaaata tatccttgtt ttccacacta
     1921 tgtgtgttgt tcccaaaaga atgactgtct tggttcatca gtgaattcac tatccagaag
     1981 agaactgtgg tatattttaa atctgttggg ccaatgagaa aagaaccacg ctgcggagag
     2041 agatggacac ttggctgaac ctcatcacta actccagcgg ctagaatgtg ttttcatgcc
     2101 cggcctttgt tcccccgtcc gtgtgtcctt tagtttcaaa cagatcttta tagtttgtgc
     2161 ttcataagcc aattcttatt atgattttgg gggactgttc ttcaaagagc ttgccagtga
     2221 agatttagag acaaagcgaa gacttcttca agtcccaagc cttggctatg gacaaagcaa
     2281 tcttaagttg gacagcttcc tcaacacgcg cacatgtgtg cgcgagcgca cacacacaca
     2341 cacacacaca cacacacaca cacacacaga aattattcat ggtcattgca ccataagatt
     2401 ctatcaggaa ctcaaagctt gggggataaa acggagcaag agaatactgt aacaaacttc
     2461 gtacagagtt cggtctttta attgtttcat gttagatatt ctatgtgttt acctcaattg
     2521 aaaaaaaaaa agaatgtttt tgctagtatc agatctgctg tggaattggt attgtatgtc
     2581 catgggatcc tcttttctca gcacgtgttc ctcactagaa gaaaatgctg ttacctttaa
     2641 gctttgtcaa atttacatta aaatacttgt atgaggactg tgacgttatg ttaaaaaaag
     2701 gtgttaagtc acaaaatgcg gtaataaata tttcattttt gattttt
//
