LOCUS       XM_039103206            5517 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus myocyte enhancer factor 2D (Mef2d),
            transcript variant X9, mRNA.
ACCESSION   XM_039103206
VERSION     XM_039103206.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103206.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5517
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5517
                     /gene="Mef2d"
                     /note="myocyte enhancer factor 2D; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 62 ESTs, 4 long SRA reads, 15 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 26 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:81518"
                     /db_xref="RGD:621489"
     CDS             579..2099
                     /gene="Mef2d"
                     /codon_start=1
                     /product="myocyte-specific enhancer factor 2D isoform X4"
                     /protein_id="XP_038959134.1"
                     /db_xref="GeneID:81518"
                     /db_xref="RGD:621489"
                     /translation="MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIA
                     LIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIEALHKKHRECESPEVDE
                     AFALTPQTEEKYKKIDEEFDKMMQSYRLASSVPAPNFAMPVTVPVSNQSSMQFSNPSS
                     SLVTPSLVTSSLTDPRLLSPQQPALQRNSVSPGLPQRPASAGAMLGGDLNSANGACPS
                     PVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPTHNTQLGAPSRKPDLRVITSQG
                     GKGLMHHLNNAQRLGVSQSTHSLTTPVVSVATPSLLSQGLPFSSMPTAYNTDYQLPSA
                     ELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQPPQPQPQQPPQQQPHL
                     VPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPE
                     PGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWTLK"
ORIGIN      
        1 tgtcgcttta aatgtctggg cgtcaaccga gccgggtcag gggaaaggag gggacctgtc
       61 acaggtagag ggagcagcgg agctccccag gtaaccacca gattagagaa cgcgatctgg
      121 catcggagct ttgtcacaca ctaggctgcg ctgtgcctac gtcggcctcg agtctggggc
      181 tggaggagtt gcctttggag cccgaaagga ggaaggaagc aaaatatcaa caaccgtcga
      241 ggcggcttgg gcgctcggct gcgtccccgc cgcccgccgc cgccgccccc gcgcgcacca
      301 gggggtcccg gccctgtggc gccgcccagg ccgcgtggac gcggcgcctt cgctgttccc
      361 cgtccgagct gcggcttcgc gcagccgagg attccgcgga ccgggccgaa gctcccggcg
      421 ccgtgacacc ccgttccccc acgggctgga ggctgtgcat aggtgttctg cagaccatga
      481 actgagcact agtcccagac attcatgagc acagtgtgag gctcctgatc accacccagc
      541 agccccttcc tctctggcac taaggacccc tggagaagat ggggaggaaa aagattcaga
      601 tccagcgaat cactgatgaa cggaaccgcc aggtgacatt caccaagcgg aagtttgggc
      661 tgatgaagaa ggcctacgaa ctgagtgtgc tgtgcgactg tgagatcgcg ctcatcatct
      721 tcaaccactc caacaagctg tttcagtacg ccagcaccga catggacaag gtgctgctca
      781 agtacacgga gtacaacgag ccgcatgaga gccgcaccaa tgctgacatc attgaggcgc
      841 tgcacaagaa gcacagggaa tgtgagagcc ccgaggtgga cgaggcgttt gccctgaccc
      901 cccagacgga ggagaagtat aaaaagatag acgaggagtt tgataagatg atgcagagtt
      961 atagactggc ctcatctgtt ccggccccca attttgccat gcctgtcaca gtgcccgtgt
     1021 ccaatcagag ctccatgcag ttcagcaatc caagtagctc tctggtcact ccttccctgg
     1081 tgacatcatc ccttacggac ccacggctcc tgtcccccca gcagccagca ctacagagaa
     1141 acagtgtttc tccgggcctg ccccagcggc ctgctagtgc aggagccatg ctgggtggag
     1201 acctcaacag tgctaatgga gcctgcccca gccccgttgg gaatggctac gtcagtgccc
     1261 gggcttcccc cggcctcctc cctgtggcca atggcaacgg cctaaacaag gtcatccctg
     1321 ccaagtctcc acccccaccc acccacaaca cccagcttgg agcccccagc cgcaagcctg
     1381 atctgcgggt catcacttcc cagggaggca aagggttaat gcatcatttg aacaatgccc
     1441 agcgccttgg ggtctcccag tctacccact cgctcaccac cccagtggtt tccgtggcaa
     1501 caccaagttt actcagccag ggcctcccct tctcctccat gcccactgcc tacaacacag
     1561 attaccagct gcccagtgca gagctttcct ccttaccagc cttcagctca cctgcagggc
     1621 tggcactagg caacgtcacc gcctggcagc agccccagca gccccagcag ccacaaccac
     1681 cacaaccgcc acagtcacag ccacagccac cacagccaca gccacagcag ccacctcagc
     1741 aacagcccca cttggtccct gtttctctca gcaacctcat ccctggcagc cccttgcccc
     1801 atgtgggtgc tgctctcact gtcactaccc acccccacat cagcatcaag tcagaaccag
     1861 tgtccccaag tcgtgaacgc agccctgcac ctcctccacc agctgtgttc ccagctgccc
     1921 gccctgagcc tggcgaaggt ctcagcagcc cagctggagg atcctatgag accggggacc
     1981 gggatgatgg acggggggac tttgggccca cactaggcct gctgcgccca gccccagagc
     2041 ctgaggctga gggctcagct gtgaagagga tgcggctgga tacttggaca ttaaagtgat
     2101 ggttcccact cccatctctc agcctccctg atgaagagtt gacaatctca ccgcccaccc
     2161 ctccctgtcc tgggctcctc ccgctcgacc ccacttcctt tcttctgctc catgtcctgt
     2221 tgatggttac atttgtgtat aattatatta ttattattat tattgttatt attattatat
     2281 ttttaaattc aaattctcgc tttagagaga gggatgctct tgcccctttc ttgctcccac
     2341 cattttcact gatgggggac tctctttatt gcgggaaagg ggggacactt tgcacgttgt
     2401 acacatatgc tgcaggaagg gggggaggcg gtaggccttg gagaaggaca ggtgccgagc
     2461 cctgcatgtg gagccctccc atcccattcc cagatagacg taaagaacca aaaactaccc
     2521 aacaacaaaa cccagacagt ggactgaaac ccaaagctgg cttgatgagg ggcttgtgtc
     2581 tcgggatata ggaggaggtg gagtttctgc ttctgggcag ttcgtggcta atacctatcc
     2641 tggtcccttc agcttcctgc atacatactg cactcactga tcctgtgtgc tacaccccaa
     2701 gatctgggtg atagaaaggc tgcctaggat tctgaggcca gggcaagggc ttgaggtagg
     2761 aatctctaga agaaactgtg gagagggaca gctgtagaaa gagagctgag gaggacagaa
     2821 ggactgggtg tgatgacttg ggaccctacc cccagctttt cctttaagat gtacagtgca
     2881 atagcgcccc atccttcagc ctaccccagc cctaaagaaa gctggccatg tcctgggaga
     2941 gttgggagat gaccttaagt gaagtggctc caggtgggcc agagtcatcc tggggcactg
     3001 aagtcaggag gcctgtcagg ggctttgtgc acctgtgtcc agagagtaca cactaggcac
     3061 atggcatggt ctgtggagct agaggctcct gtagatgagg cccctagccc ttccccaggc
     3121 ctctgagctc ctgcccctgc cccacctccc agctctcttt atgccccttg tctcgctacc
     3181 tcctgtccct acacctccag gccacatccc atacctgccc tcttgctact gtaattgtaa
     3241 atagagacct ttcaaatgtt agtggtgtaa cagtccagga aactgttgtg tttgttgttg
     3301 ttgtattgat atgaaatgag attctatttt tgtcaaagta tattgtaata ataatgactc
     3361 aaatggcccg tcctgtacag atgagattct tctgctgtgt tcttgccttc ctctcccaga
     3421 ctcatgcttt gtggcctcct cagtggggct gcagcaagac caggggcagt ggaagcattg
     3481 ggtccttggg cctcttgctg gatctgaggt caaattggag ggaatagtct gccccctccc
     3541 cagcctgctc tctgtcacca tccctgccct tcctctgctt tcccacccag gaaaagggga
     3601 tgggagacag ccacaccccc ttggagctcc ctcccagccg gagggtagag ttagacaagg
     3661 ctcagtgctg tagtaagatg gtctttgccc aactatgacc cagccttttg tagtatttga
     3721 cacttgatgc agggaaggag ccagaagcag aggggtgtga gcatgctcgt gggggcgtat
     3781 ctgggttcac cctgtattta tgtgtttgtg tgcagctgtg cggatgtacc tttgagtgac
     3841 tcaagctcca agggcctctg tgtctgtgag ctggatgtgt ttacaaggga taggcagctt
     3901 ccaactctgt ggcttcactc ccctccctgg gctgctctca gtcccaaaac attttactaa
     3961 agtttggggg agggagtgct agtcggcctt cctcttctcc ccacagccta cctccaccag
     4021 ggcttcacat ttggagctct gcctccatac ggctgtccac tagccccacc cagtcacagt
     4081 tccatccctg gagttctgac ttgtttatgg agccaactca agttcctctt cctcctggga
     4141 gctttgcctt ccatggggca gggaccgtcc cttacccaga gttttgcccc cctcctcagt
     4201 tcctagaggg aagttttgag acttgcttac ggctttgaaa gaagccaggg tgtagttctg
     4261 tgctcccctt gaagtagctg gcacattata ggcccttagt aaatgctgaa tgggttgatg
     4321 acaggtgctc aataaatgtg gaatcacggc ttcatctcag gcctatcctt cctggactga
     4381 gtttggccac cattatacac acagctgggg gtgaagcccc tatagttcac agtgtgctat
     4441 tcaacagttt gccatctgct tcccgaaagc aaacctggct tgtgattgcc gtgtgtgtgc
     4501 gcgcttgcac gtgggtgtgt gggtgtgtgg gtgtgtatca cacacacaca cacacacaca
     4561 cacacacaca cacacacaca cacacacacg agttcctatg tgtctctgtc cctgacagta
     4621 ggggcagtct atgaatgaat atgtgacatt tctgaagttc agtatctcca ggtttctcct
     4681 ggggctatgt aggggcttct ggctggccag gtaaatggat ccctgggaac ccagacctca
     4741 aatggggact tactttcttc ctctcacaag ccaaatttgc ctcctatcca ctccctctac
     4801 aaaactgggt atttgccaaa gtagcctctg gcgtcatcca gtgcccttcc cacccaggtt
     4861 cccctccact ttcagggata gtgggactga gggccacccc cacatgcctc aatggaacac
     4921 atttcctcca tccccagcag tgtatccacc catccctccc ccactcgaac aggaaggaag
     4981 aaatgcacct tctcttgctc attatttatt tgtttggaga gacaaaaatg atgggaaagt
     5041 atctaaaaat ctctctctct atttttatgc gactctctgg aaccccctgt gggggaatgt
     5101 cagctctcct gaaggctggg agctcctcat tctgccctgt ctgcctctac gtaagcggaa
     5161 gggatgggac ataatgggac aggagggctg attcccaagg agaatctgaa ttctctaccc
     5221 cattcaatcc cagaaagagg gaagaaggga gggatggggc cagccaagag ctgacccacc
     5281 cccaaacttg acaatcaccc acactcctga ctcctgggtc ttgggtgagt ccaagtgtgt
     5341 ggctgttgat ttgttttcat tatttctttc tgtgctgtac ggtgatgctt tctagtattc
     5401 tgcacattca gaaaagtcct cgagattctt acgagtttgg tttgaaaact ctttcactat
     5461 atttgttgta aagaggttta ctattaaaag aaaaaagaac atgtttctga tacctca
//
