LOCUS       XM_006236103            4178 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MyoD family inhibitor domain
            containing (Mdfic), transcript variant X2, mRNA.
ACCESSION   XM_006236103
VERSION     XM_006236103.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006236103.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006236103.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4178
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4178
                     /gene="Mdfic"
                     /gene_synonym="Kdt1"
                     /note="MyoD family inhibitor domain containing; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     36 samples with support for all annotated introns"
                     /db_xref="GeneID:362325"
                     /db_xref="RGD:1309532"
     CDS             553..1182
                     /gene="Mdfic"
                     /gene_synonym="Kdt1"
                     /codon_start=1
                     /product="myoD family inhibitor domain-containing protein
                     isoform X2"
                     /protein_id="XP_006236165.1"
                     /db_xref="GeneID:362325"
                     /db_xref="RGD:1309532"
                     /translation="MSGAGEALPPGPVGQQCPAEAGGGRLGSPAHEECNEDTTEKEKR
                     QTTSSHTRCGLIRDQSIWRNPSDGELVRTQPERLPQLQTSAQEPSKEETSKIQNGGHT
                     TMNNGNGIPHRAKHMSMDNHKMSSPVSQKMHRKIQSSLSVNNDVNKKSKVNAVFSQKS
                     ASSPEACTMGLLHPGTIPGEPNHSCCSPVLLGKPEVFPHFTKWTVLCLK"
ORIGIN      
        1 tcccaaacct tggtgggcca gggtggagaa gcctgctcct ggcctgtcct ctctggctgg
       61 cctcctgacc cagacagttc cctcctcaag ggagcacagg gccaaaccta ggtcgcgccg
      121 cccccagcct cggggctgtc tgccaagagt tcgaggccac cccaatccgg atatgatgaa
      181 agggcgccac agagagagaa gtgtttgaag agtgtaggag tggcagcccg agggtgaaag
      241 agacgcacaa gtggatccta aagtccttcc cggagaggga ctgcccggag ggaagggaca
      301 gagtgcacgg agtcagagcg ggcggctgcc accgtcgccg ccactctggg agaccgctgg
      361 acctggtcag actgaccgga cgtgatgggc ccgcggcccg agcctcgctg acggccggcg
      421 gtgggaggaa ggactcggag ctgcctgcag ggttggggtg atgcagagag gcaggcagtt
      481 tcctgcaccc agcacctaag tagccggggt cggtgcaccc cgcggggacg gcgcgggctc
      541 cgagcgtggc ccatgtccgg cgcgggtgaa gccctccctc cagggcccgt ggggcagcag
      601 tgcccagccg aggcgggcgg tggccggctg ggctccccag cccacgaaga gtgtaatgaa
      661 gacactaccg agaaagaaaa aagacaaact accagtagcc acactaggtg tgggctgatt
      721 cgggaccagt ccatttggag aaatccttca gatggcgaac ttgtcagaac ccaacctgag
      781 cgtctgcctc aactgcagac atcagcacag gagcccagca aggaggaaac cagcaagata
      841 cagaatggtg gccacacaac tatgaacaat gggaatggaa ttcctcacag agccaaacat
      901 atgtctatgg ataatcacaa aatgtcatct cctgtctctc agaaaatgca tagaaaaatt
      961 cagtccagct tgtctgtaaa caatgacgtc aataagaaga gtaaagtaaa tgctgtcttt
     1021 tcccaaaaat cagcttcctc acctgaagca tgtacgatgg gccttctgca tccagggaca
     1081 attccaggag agccaaacca ttcctgctgc agccctgtcc ttctgggaaa gcctgaagtt
     1141 tttccacatt ttaccaagtg gactgtcctg tgtctgaagt gacttggcta taaaaaggca
     1201 ctcaaagact taaagacaaa tccgcctttt aaaatgatgt aatcaagaca ctggagaggt
     1261 ggcccagcag ttaagagcat tggctgttgt tccatgtgac ccggtttccg ttcacagccc
     1321 acaattgtgt gggctcacca ttgtctctaa ttccagttcc tgagaattca atgcctagtt
     1381 ctggctgctg aggataccag gcataattca agatcagttt gctttgcaca gtgagatatg
     1441 acctcaaagg atcaagctaa ctaaccaagc aaatgactaa acagtctgaa ctaaaggcaa
     1501 tttacccagc attccaacgt cacttgagtg tgaatggcca tccacctgtg gtggatacat
     1561 ggagtttcat ttcagtgagc atgtgtctac ttaaatcctt tcctcttgag attttaggaa
     1621 cagctatcac acctgtactc tgcagtggtt tttctcccct gagagattga attctcaaaa
     1681 ccagtgagtg gttctgactc tgttgtgttt accatggtac ctgtaatctt aaagtttccc
     1741 aagtattcat gagtggcgtg ttgatttatt tcaaactgtg gtgtctcctt ccttgaaact
     1801 aatgtagctc atatattctt ctaaaatgtt cctttttatg gcagagagga aaaaatactt
     1861 atgtgggaag acagcacatt ttacttaaag gttattaaat tagtagattt cttcctgttt
     1921 tgtataatta aatattttca tacattctta aattttctga ttgcatcacc caggtggaga
     1981 gttttaagac taaatgtgta agattcttga cctttgaaat aattatagtg taatttagta
     2041 tcatctaata ttcaaattgc caagggtttt cattagtctt ggagacactt ttcctttcat
     2101 agagatggta aatgctaata tgttttaggt gtgccagtta tagctatagt ttttgtaaaa
     2161 aaaaataggt ttcaacaaaa atattgttaa aaaatttcat tctctttagg gatgtttggc
     2221 aatttatttg cactccacac ttgatactca agagtcagta tttgtaggag gaacacattg
     2281 gatttcagca tctcactgaa atcagtgctc ggaaagacaa tggaaaggac tggttctaca
     2341 gcgatagctg gagaaatctc tgataatcat acggagctgt ggtagtctga tgtgtagaat
     2401 atttatggaa cccgtctgtc tgggtttgct tattagctct accctttgct tattagctaa
     2461 acccttgtat tagctctact catctgaggg tgagttagta gcctgtttct gttgtagcat
     2521 cttatcagga aaatgggaat ggtatacgta ctgatgccat aggattatta taagtattcc
     2581 gtgaggttga gcaactttgt ggtcataatt gctgatgtgt atggggttgg tggcagagag
     2641 atccgcttgc tggaaagggt gctaggtgga gacttaaaag gtaaggtaga gttaagttgg
     2701 atggttgaag gtaagatcgc tatactgttt agaactcaaa cccagggaat gtctttgtcc
     2761 acaaggactc agtttcccca catctgctaa tgtaagaggc tatcccccac ctactggccc
     2821 ttctgatcta aacatttcct cattaagact ctcttgtcag gtgattttat actgtgtcaa
     2881 gctaaccgtt taaagtagcc gtcagatagg aggaggcatt aggagggtac aagaagcttt
     2941 atgaattagt attttcagat tactcaagtg acttgatctg atggataagc tgacataggg
     3001 gagatgatac tgaacaaata ggaagcggtc attccaccgg cagccgagat gtctgttctg
     3061 aagatggatc cccattctct atgacttgct gaaggacatc attgtgtcag ctacattaaa
     3121 tcgtgttgtg ttttcattcc gttgtttgga accccctctg gttgctcttg tatatgtcta
     3181 gggagcttct tacttggtgc ctgcactgca gtgtatgcag tgtctttgtt ctgactctct
     3241 tacagccctt ctgctctttt gtggtgaact gttactgtaa gtcagatagt aagaggttgg
     3301 agacacggtg gatttcagaa gctaagaggt tgcagttcag ttctctggac ctgttgatgg
     3361 attaaagtcc aatcttgatg gtcttgtctt ctgtcaccct ttttttttta caaggttctg
     3421 tgagattctt actctgtgat cttgtctttg atccttttta ggctcttgtt ctttcttttt
     3481 ttcagggcat tttcttgggc atccgtactg tttatttttg ttgttgtttt gttttgtttt
     3541 ataatatagt agaggtttga gcatcctctt gccaacagca agttctctag gaagttgctg
     3601 ccagtcttac cagttttcat catcatcatc atcatcatca tcatcatcat catcaccatc
     3661 accatcatca tcatcatcat catcatcacc atcatcatca tcatagtata gtttaaatga
     3721 cttatacatt gcagaacttt aaaacctggt ataaagtgtc aacattaagg ttaagttact
     3781 cattctaaat tttataactt taaaattttt gtttttcccc aagaaaagat tttgcctgta
     3841 attgtagaac tagcagacca gcctcgtagt gaggatggat aataatgagg ctatatggta
     3901 tcactacagt gttctagctg gagtttccag ggacagactt ttgatgactt ggggaaaata
     3961 tgtcatggca ttccacaaag tacttaattt gcaatggtaa aattgtgtta cttgtgctct
     4021 gttttctcag gcacaccgct tcccagtgca tgtcagaata acactcagca tgagtggttt
     4081 agaattgtgc tttccaatgc aatatttgcc agtacgctgg agaataggag ctcactaagg
     4141 gggacagcaa gtagtgtgtg tgagtgtgtg tgtgtgtg
//
