LOCUS       NM_001399696            1606 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus MAP3K12 binding inhibitory protein 1 (Mbip),
            transcript variant 1, mRNA.
ACCESSION   NM_001399696 XM_006240120
VERSION     NM_001399696.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Spedale,G., Timmers,H.T. and Pijnappel,W.W.
  TITLE     ATAC-king the complexity of SAGA during evolution
  JOURNAL   Genes Dev 26 (6), 527-541 (2012)
   PUBMED   22426530
  REMARK    Review article
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Krebs,A.R., Demmers,J., Karmodiya,K., Chang,N.C., Chang,A.C. and
            Tora,L.
  TITLE     ATAC and Mediator coactivators form a stable complex and regulate a
            set of non-coding RNA genes
  JOURNAL   EMBO Rep 11 (7), 541-547 (2010)
   PUBMED   20508642
REFERENCE   3  (bases 1 to 1606)
  AUTHORS   Guelman,S., Kozuka,K., Mao,Y., Pham,V., Solloway,M.J., Wang,J.,
            Wu,J., Lill,J.R. and Zha,J.
  TITLE     The double-histone-acetyltransferase complex ATAC is essential for
            mammalian development
  JOURNAL   Mol Cell Biol 29 (5), 1176-1188 (2009)
   PUBMED   19103755
REFERENCE   4  (bases 1 to 1606)
  AUTHORS   Venkatesan,K., Rual,J.F., Vazquez,A., Stelzl,U., Lemmens,I.,
            Hirozane-Kishikawa,T., Hao,T., Zenkner,M., Xin,X., Goh,K.I.,
            Yildirim,M.A., Simonis,N., Heinzmann,K., Gebreab,F., Sahalie,J.M.,
            Cevik,S., Simon,C., de Smet,A.S., Dann,E., Smolyar,A.,
            Vinayagam,A., Yu,H., Szeto,D., Borick,H., Dricot,A., Klitgord,N.,
            Murray,R.R., Lin,C., Lalowski,M., Timm,J., Rau,K., Boone,C.,
            Braun,P., Cusick,M.E., Roth,F.P., Hill,D.E., Tavernier,J.,
            Wanker,E.E., Barabasi,A.L. and Vidal,M.
  TITLE     An empirical framework for binary interactome mapping
  JOURNAL   Nat Methods 6 (1), 83-90 (2009)
   PUBMED   19060904
REFERENCE   5  (bases 1 to 1606)
  AUTHORS   Wang,Y.L., Faiola,F., Xu,M., Pan,S. and Martinez,E.
  TITLE     Human ATAC Is a GCN5/PCAF-containing acetylase complex with a novel
            NC2-like histone fold module that interacts with the TATA-binding
            protein
  JOURNAL   J Biol Chem 283 (49), 33808-33815 (2008)
   PUBMED   18838386
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Jan 13, 2022 this sequence version replaced XM_006240120.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.17824.1,
                                           SRR26360172.1322385.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMN12840108 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-212               JAXUCZ010000006.1  79560263-79560474   c
            213-332             JAXUCZ010000006.1  79556846-79556965   c
            333-551             JAXUCZ010000006.1  79554939-79555157   c
            552-648             JAXUCZ010000006.1  79554754-79554850   c
            649-714             JAXUCZ010000006.1  79552325-79552390   c
            715-867             JAXUCZ010000006.1  79551893-79552045   c
            868-965             JAXUCZ010000006.1  79550425-79550522   c
            966-1004            JAXUCZ010000006.1  79545261-79545299   c
            1005-1606           JAXUCZ010000006.1  79543223-79543824   c
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q23"
     gene            1..1606
                     /gene="Mbip"
                     /note="MAP3K12 binding inhibitory protein 1"
                     /db_xref="GeneID:362740"
                     /db_xref="RGD:1306310"
     exon            1..212
                     /gene="Mbip"
                     /inference="alignment:Splign:2.1.0"
     CDS             84..1112
                     /gene="Mbip"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="MAP3K12-binding inhibitory protein 1 isoform 1"
                     /protein_id="NP_001386625.1"
                     /db_xref="GeneID:362740"
                     /db_xref="RGD:1306310"
                     /translation="MAATAEHSSSSSCEKNLERSSSPLLTREVLCEVFRSLHTLTGQL
                     NLRDDVVKITIDWNRLQSLSTSQPALLLTALEQHVLYLQPFLAKLQSLIKENSTAAEL
                     RQTEAETKSELRAKLPTGDLQDEGKLKDDDLGDVKKTQIHFDPEVVQIKAGKAEIDRR
                     ISAFIERKQAEINENNVREFCNVIDCNQENSCARTDAVFTPYPGFKSHVKVSRVVNTY
                     GPQTRPEGIAGSGHKPTGMLRDCGNQAVEERLQNIEAHLRLQTGGPVPRDIYQRIKKL
                     EDKILELEGISPEYFQSVNFSGKRRKVQPPQQNYSLAELDEKISALKRALLRKSREAD
                     SMASHHLP"
     exon            213..332
                     /gene="Mbip"
                     /inference="alignment:Splign:2.1.0"
     exon            333..551
                     /gene="Mbip"
                     /inference="alignment:Splign:2.1.0"
     exon            552..648
                     /gene="Mbip"
                     /inference="alignment:Splign:2.1.0"
     exon            649..714
                     /gene="Mbip"
                     /inference="alignment:Splign:2.1.0"
     exon            715..867
                     /gene="Mbip"
                     /inference="alignment:Splign:2.1.0"
     exon            868..965
                     /gene="Mbip"
                     /inference="alignment:Splign:2.1.0"
     exon            966..1004
                     /gene="Mbip"
                     /inference="alignment:Splign:2.1.0"
     exon            1005..1606
                     /gene="Mbip"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcatctcgg tgagacgaaa tccgcgaggg aggggtcggg gtgagcactc ttcgcagtgg
       61 ttgggggctg ctgtgaaggt gtcatggctg ctactgcgga gcatagttcc tcgagcagct
      121 gcgagaagaa cctagagcga agctccagcc ccctcctcac ccgcgaggtc ctctgcgaag
      181 tctttcgctc cttgcacacc ctgacaggac agcttaacct cagagatgat gtggtgaaaa
      241 ttacaatcga ttggaacagg ctccagagcc tctcaacatc ccagcctgca ctgctcctta
      301 ctgcacttga acaacacgtt ttgtatttac agcctttttt agcaaaactt cagtctttaa
      361 ttaaagagaa ttcaacagct gcagaactaa gacaaacaga agcagagacc aagagtgaac
      421 taagagccaa acttcccact ggggacctac aagatgaagg aaagctcaaa gacgatgatt
      481 taggggatgt gaaaaagaca caaatccatt ttgatccaga agtagttcaa ataaaggctg
      541 gaaaagcgga aattgacaga cgaatatctg catttattga gagaaaacaa gctgaaatca
      601 atgaaaacaa cgtcagggaa ttttgcaatg ttattgattg taatcaagaa aatagttgtg
      661 caagaactga tgctgtcttt accccttatc ctggatttaa aagtcatgta aaggtttcta
      721 gagttgtgaa tacatatgga cctcagacta gacctgaagg aattgcaggg tcaggtcaca
      781 aacccacggg catgcttcga gattgtggta atcaggcggt ggaagaacga ctccagaata
      841 ttgaggctca cttgcgattg cagacaggag gcccagtacc aagagacatc tatcagagaa
      901 ttaaaaaact tgaagataaa atccttgaat tggagggcat ctctcctgaa tactttcaat
      961 ctgtaaactt ttctggaaaa agaagaaaag tccaaccacc tcaacagaac tattcactgg
     1021 ctgaactgga tgagaaaatt agtgctctca aacgagccct gctcagaaag tcgagagaag
     1081 cagactccat ggcctctcac cacctcccgt gagaccacac tgtcacgttg cttcccttta
     1141 agatgcgagt gcgtgtacct tacaaatgct taactatttg caatgtattc atcaacataa
     1201 ccttgtctgg aaagtcaagg tttacttttg catgagactg gccgacagca aataatcaaa
     1261 tattgcagtg tttggaaatg atataaccct tgaccatagc actgttggaa tttgtttcct
     1321 tctgttttaa aggaggcatt ttggatagta caaaacttaa tttgaaagaa cttcttttgg
     1381 tggaccacca gagatttttt attttgatag ttgtatttaa aaggacttta tatttgtaac
     1441 attgattaac caattttttt tttcagttta tatcagtact ttgtacatag tgggcattta
     1501 acaaaattta ttgacagtaa aacaaaagct gacaaatgca tgtgtataaa ctttctttca
     1561 tgtctttctt attgtaaata aacacttgac cagttttatc atcttg
//
