LOCUS       XM_056985409            6578 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus methyl-CpG binding domain protein 5
            (Mbd5), transcript variant X1, mRNA.
ACCESSION   XM_056985409
VERSION     XM_056985409.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6578
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6578
                     /gene="Mbd5"
                     /note="methyl-CpG binding domain protein 5; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 11 ESTs, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     95 samples with support for all annotated introns"
                     /db_xref="GeneID:311026"
                     /db_xref="RGD:1562961"
     CDS             844..6045
                     /gene="Mbd5"
                     /codon_start=1
                     /product="methyl-CpG-binding domain protein 5 isoform X1"
                     /protein_id="XP_056841389.1"
                     /db_xref="GeneID:311026"
                     /db_xref="RGD:1562961"
                     /translation="MNGGKECDGGDKEGGLPAIQVPVGWQRRVDHNGVLYISPSGSLL
                     SCLDQVKTYLLTDGTCKCGLECPLILPKVFNFDPGAAVKQRTAEDVKADDDVTKLCTH
                     KRKIIAVATLHQSMEAPHPSLVLTSPGGGTNAAPAVPSRAATPRSARNKAHEGITNSI
                     MPECKNPFKLVAGSSNAMGRLYMQDLPGSQQQELHTVYPRQRLGSSEHGQKSPFRGSH
                     GGLPSPASSGSQIYGDGSISPRTDPLGSPDVFTRNNPGFHGAPNSSPIHLNRTPLSPP
                     SVMLHGSPVQSSCAMAGRTNIPLSPTLTTKSPVMKKPMCNFSANMEIPRAMFHHKTPQ
                     GPPPPPPPSCALQKKPLTSEKDPLGILDPIPSKPVNQNPIIINPTSFHSNVHSQVPVM
                     NVSMPPAVVPLPSNLPLPTVKPGHMNHGSHVQRIQHSTSTSLSPSPVTSPVHMMGTGI
                     GRIEASPQRSRSSSTSSDHGNFMMPPVGPQASCSGIKVPPRSPRSTIGSPRPSMPSSP
                     STKSDGHHQYKDIPNPLIAGMSNVLNTPSSAAFPTAPAGNGSVKSQPGLLGMPLNQIL
                     NQHNAASFPASSLLSAAAKAQLANQNKLAGNNSSSSNSSGAVASSGNTEGHSTLNTMF
                     PPTANMLLPTGEGQSGRAALRDKLMSQQKDSLRKRKQPPTTVLSLLRQSQMDSSAAPK
                     PAPDLLRKHGQGSFPISSMSQLLQSMSCQSSHLSSNSTPGCGGSNTALPCSANQLHFP
                     DPNMNSTVLQNSLTQSIPLRGEAVHCHNANTNFVHSNSPVPNHHLAGLINQIQASGNC
                     GMLSQSGMALGNSLHPNPPQSRISTSSTPVIPNSIVSSYNQTSSEAGGSSLPSSIAIA
                     GSSHPAITKTTSVLQDGVIVTTAAGNPLQSQLPIGSDFPFVGQEHALHFPSNSTSNNH
                     LPHPLNPSLLSSLPISLPVNQQHLLNQNLLNILQPSAGEGKSEINLHPLGFLNPNVNA
                     ALAFLSGDVDGQVLQPVHFQLLAALLQNQARAAAMLPLPSFNLTISDLLQQQNTPLPL
                     LTQMTAPPDRLPSNQSDNSRADTLLGSPLGNPLTGSDTTFNPLLLPAVTGASGLMALN
                     PQLLGGVLNSASANTAIHPEVSIATSSQATTTTTTTSSAVAALTVSTLGGTAVVSMAE
                     TLLNISNNAGNPPGPAKLNSNSVVPQLLNPLLGTGLLGDMSSINSSLNNHQLTHLQSL
                     LNSSQMFPPSQQQPPPQPHLLQGQQNLQAFQGQPTVLCPANNNPMACLFQNFQVRMQG
                     DAALLNKRINSQPGLTALPENPNLALPHFQDTPCELQPRIDPSLGQPMKDGLVMGGQG
                     DASVDAIYKAVVDAASKGMQVVITTAVNSTTQISPIPALSAMSAFTASIGDPLNLSSA
                     VSAVIHGRNMGGADHDSRLRNARGARLPKNIDHGKNSGEGDGFECYKSASCHTSRKQW
                     DGEQSPRGERNRWKYEEFLDHPGHIHNSPCHERPNNVSTLPFLAGEQHPILLPPRNCQ
                     GDKILEENFRYNNYKRTMMSFKERLESTVERCTHINGNRPRQSRGFGELLGTAKQDLV
                     LEGQSPGSSNSLESSLVKDYIHYNGDFNAKSINGCVPSPSDAKSISSEDDLRNPDSPS
                     SHELIHYRPRTFNVGDLVWGQIKGLTSWPGKFIREDDVHNSCQQSPEEGKVEPEKLKT
                     LTEGLEAYSRVRKRSRKSGKLNNHLEAAIHEAMSELDKMSGTVHQIPQGDRQMRPPKP
                     KRRKISR"
ORIGIN      
        1 ttccagagag aagcagcacg ccctcgctga gcacagtgca cctggacact tgccaccatt
       61 acactgtcag agcgcacact tgctatgctt gtccccgctt ctctccagaa gaagttggaa
      121 acctaaccgc ctacagaggc cagaatggtg gaatgaaaca ggaagccact gaagtgagct
      181 ggagagccaa gccctttctg gaggagcagc cactgctctg ctccagataa ctgtggcaag
      241 gcaggaatgt tgacccactc ttaccacact aatggtccag tttctcaggc tacattgatg
      301 gaattttgaa gtcatgaaaa catcagatga accagcctgc aacaccttgg attcacattg
      361 gaaaatgaag tggaagctta aagaatgtgg cctttaaagg caggcagtac tggagacatt
      421 aactggctgg tggtgtcaaa gcagaccaga tcctagacag tagaggttat cttagtccag
      481 tatcaaggtt caggacaaaa tgtacaacta aaaacttttc atcccttcct cttctgcttc
      541 agacaggtac cagcataggt gaattatgat tttccctggt tgagagtgtt tggttttgcc
      601 tatgtagacc atgcctagga atgaaatact tcttttattt aatatagatt ataatgggaa
      661 acactttcac aatggctgat ttcaaggact tggttccaaa ctgagccgaa ctttcccgat
      721 gtacttcgta gtccgggaaa actgtgctat gctggcccag ttttgaaagg ccaccatgct
      781 cggtaataga aggatatcat cttattgctg atatctttgg agcaccccaa gcagacacag
      841 aaaatgaatg gaggcaaaga gtgtgacgga ggagacaagg aaggcggtct tccggctatc
      901 caggttcccg tgggttggca gcgtcgtgtg gaccataatg gcgtgcttta catcagcccc
      961 agtgggtctc tgttatcttg cttggaccag gttaagacat acctgcttac tgatggaaca
     1021 tgcaagtgtg gcttggagtg tcctcttatt cttcccaagg tgtttaactt tgatcctgga
     1081 gctgctgtga agcagagaac ggcagaagac gttaaggcag atgacgatgt cacaaagctg
     1141 tgcacacata agagaaagat cattgcagtg gccaccctcc accaaagcat ggaggcccca
     1201 cacccttctc tggtgctcac cagtcctgga ggaggaacaa atgcagcccc agcagtacct
     1261 tcccgggcgg caactccaag atcagcgaga aacaaggctc atgaaggaat tacaaattcc
     1321 ataatgccag agtgtaagaa tcctttcaag ctagtggctg gatcatcgaa tgccatggga
     1381 aggttataca tgcaggacct gcctggaagc cagcagcagg aactccacac tgtctacccc
     1441 cgccagagat tgggcagtag tgagcacgga cagaaatctc catttcgtgg cagccatgga
     1501 ggcctgccca gcccagcgtc atcagggtcc cagatctatg gagatggctc aatctctcca
     1561 aggactgacc ctcttggaag ccctgatgtc ttcacaagaa ataaccctgg ttttcatgga
     1621 gctcccaatt ccagtcctat tcacctgaat aggactcctc tttctccacc ttcagtaatg
     1681 ctacatggtt ctcccgtaca gtcatcctgt gcaatggctg gaagaactaa tatacctctt
     1741 tccccaacct tgactacaaa gagtccagta atgaaaaaac caatgtgtaa tttttcagct
     1801 aatatggaaa taccacgagc aatgttccac cacaaaacac cccaaggccc acctccccct
     1861 cctccacctt cttgtgctct tcagaaaaag ccattaacat ctgagaaaga tccacttggc
     1921 attcttgacc ctattcctag taaaccagtg aatcagaacc caattatcat taatccaacc
     1981 agtttccatt caaacgtcca ctctcaggta cctgtgatga atgtaagcat gcctcctgct
     2041 gttgttcctt tgccaagtaa tctccctttg ccaactgtaa aacctggtca tatgaatcac
     2101 gggagtcatg tacaaagaat tcagcattca acttcaacct ccctgtcccc ttctccagtg
     2161 acatccccag tgcacatgat ggggactgga attggaagga ttgaggcatc gccccaaaga
     2221 tcacgctcat cttccacatc atcagatcat ggaaatttca tgatgccacc tgtaggaccc
     2281 caggcctctt gtagtggcat aaaggttcca cctaggtcac caaggtcaac aataggttcc
     2341 ccaaggccat caatgccatc aagcccttcc accaagtctg atggacatca tcagtacaag
     2401 gatatcccta acccattaat tgctggaatg agtaatgtac tcaatacccc aagcagtgca
     2461 gcctttccta ctgcacctgc cggaaatggt tctgtaaaga gtcagcctgg tttgctggga
     2521 atgcctttaa atcagatttt gaaccagcac aatgctgcct cctttccagc aagtagttta
     2581 ctctcagcag cagccaaagc acagctagca aatcaaaaca aacttgctgg taacaacagt
     2641 agcagcagta acagttctgg agctgttgcc agcagcggca acactgaagg acacagcact
     2701 ttaaacacca tgttccctcc gactgccaac atgcttctcc caacaggtga aggtcaaagt
     2761 ggtcgagcag cactaagaga taagttgatg tctcagcaaa aagactcatt acggaaaaga
     2821 aagcagccac ctaccacagt gttgagtttg ctcagacagt ctcaaatgga tagttctgca
     2881 gctcctaaac ctgcacctga cttgctaagg aagcatgggc aggggtcatt tcccatcagt
     2941 tcaatgtctc agttactaca gtctatgagt tgtcaaagct ctcacttgag tagcaatagt
     3001 accccgggtt gtgggggatc aaatactgct ttgccttgct ctgctaacca gctgcatttt
     3061 ccagatccta atatgaattc cactgttctt cagaattcac tgacacagag cataccttta
     3121 agaggggaag ccgtgcactg ccacaatgca aacactaact ttgttcacag taacagtcca
     3181 gttcccaacc accatcttgc aggtttaata aatcagattc aggctagcgg gaactgtggg
     3241 atgctcagtc agtcgggcat ggctttagga aactcattac atcccaatcc acctcagtca
     3301 agaatttcaa cgtcctccac tccagtgata ccaaacagca ttgttagcag ctataatcaa
     3361 acaagttctg aagcaggtgg ttcaagcctg ccgtcctcca tagctatagc tggcagcagc
     3421 caccctgcca tcacaaagac aacatctgtt ctccaagatg gtgtcatagt caccaccgca
     3481 gccggaaacc cactgcagag tcagctgccc attgggagtg actttccttt tgttggccaa
     3541 gagcatgccc ttcattttcc atccaacagc acttcaaaca accatcttcc acaccccttg
     3601 aaccccagcc tcctcagttc tctacctatc tctttgccag tgaatcaaca gcatctccta
     3661 aaccagaatc tattaaatat cctccagcct tcagcaggag aaggcaagtc tgagatcaac
     3721 ctccaccctt taggttttct caacccgaat gtaaacgctg ctttagcttt tctctccggt
     3781 gacgtggatg ggcaggtatt acagcctgtt cactttcagc ttttagcagc cctgcttcag
     3841 aaccaagccc gagcagctgc catgcttccc ctgccgtctt tcaatctgac catctcagat
     3901 cttttgcaac agcaaaatac ccctttaccc ttattaacac agatgacagc cccaccagac
     3961 cgtttgccaa gcaatcagtc agacaacagc cgagctgata cccttttagg cagccccctg
     4021 ggaaacccct taacaggcag tgacactact tttaaccccc tgctcctccc agctgtcact
     4081 ggggcctcag gattaatggc cttgaatccc cagctgttgg gaggtgtcct gaactcggca
     4141 tcggccaaca ccgctattca tccagaggtt tccatagcaa cctcctccca ggcaaccact
     4201 accacaacca ctacatcatc agcagtggca gcactgactg tctcaacact tggtgggaca
     4261 gcagtggtgt caatggcaga aacattgctg aatatatcta ataatgctgg gaatccacct
     4321 ggtccagcta aactcaacag taactctgtg gtgccacagc tacttaaccc tctactgggg
     4381 acaggtctgc ttggcgatat gtcatccata aacagttctc tgaataacca tcaactgact
     4441 cacctacagt cactgctaaa cagcagtcag atgtttcctc cgagtcagca gcagccgccg
     4501 ccgcagccgc accttctcca gggacagcag aatctccagg ccttccaagg acaacccaca
     4561 gtcctttgcc cagctaacaa taaccccatg gcatgtctgt ttcagaactt ccaggtgagg
     4621 atgcaaggag atgcagctct tctaaataag agaataaaca gtcagccggg gctcacagca
     4681 cttcctgaga acccaaacct tgcacttcca catttccaag atacaccttg tgagctgcag
     4741 ccaaggattg acccgtctct tggtcagccc atgaaggacg gcctcgttat gggtggccaa
     4801 ggcgatgcct ccgtagacgc catttacaaa gcagttgtgg atgcagccag caaaggaatg
     4861 caggttgtca tcaccactgc tgtgaacagc accactcaaa tcagccctat cccagccctg
     4921 agcgccatga gtgccttcac tgcctccatt ggtgacccac taaatctgtc cagtgctgtg
     4981 agcgccgtca tccatgggcg gaacatggga ggagcggatc acgacagcag gctgaggaat
     5041 gcgagagggg cgcggctacc caagaacata gaccatggga aaaactctgg tgaaggagac
     5101 gggtttgagt gttacaagtc agcgagctgc cacacatcca gaaaacaatg ggatggagag
     5161 caaagtccca gaggggagcg taacaggtgg aaatatgagg agtttttaga tcatccaggc
     5221 catatccaca atagtccttg tcatgaaagg cccaacaatg tctccacact gccatttcta
     5281 gctggggaac agcacccaat actgttacca ccaagaaact gtcaaggtga taaaattctg
     5341 gaggaaaatt tcaggtataa taactacaaa agaactatga tgagttttaa agagagacta
     5401 gagagtactg tggagagatg tacacacatt aatggaaaca gacctcgtca gagtcggggc
     5461 tttggagagc tgctaggcac tgcaaaacaa gacctagtcc tagaggggca gtctccaggc
     5521 tcttcgaata gtttggaaag ttctctggtc aaagactaca tccattacaa tggagacttt
     5581 aatgccaaaa gcattaatgg gtgtgtgcct agtccctccg atgctaaaag cattagtagt
     5641 gaagacgacc taaggaatcc agactccccc tcttctcatg agttgataca ctatagacca
     5701 aggacgttca acgttggcga cttggtctgg ggccaaatca aaggactgac ttcctggcct
     5761 ggaaaattca taagagaaga cgacgttcac aattcatgcc aacaaagccc cgaggaaggg
     5821 aaggtggagc ccgagaagtt gaagacactc acagaaggtt tagaagccta cagccgagtc
     5881 cggaaaagga gcagaaaaag tgggaagcta aataaccatt tagaagctgc tattcacgag
     5941 gccatgagcg aactggacaa aatgtctggg actgttcacc aaatcccgca gggtgacaga
     6001 caaatgaggc cccccaaacc caagaggagg aagatctcca gataacagag agtgttccac
     6061 tgacacagtg ttcatcaaag gagcatgcac agacacacct tatgtaggta ttgatacggc
     6121 cactgttaga tcaatctgta aaccatggca gatagctacc accaccacag ggccctaaag
     6181 ggaacagcag tggagacgta cgttggtcag gaaggaaaat gaatgtcgaa aacaaaacag
     6241 aacaatcaca atccctgtat gaacgaagca gtaaatggcc gagggaccgc tgagaaatgt
     6301 tttctattgt actaaagttg tgattataag aatagtccaa atgtttctga agaattttca
     6361 gtgttgtata tagaaaatac agaatttcat ggtgatatta gaaatgtaaa tattgtacaa
     6421 tattgtcatg tacaagcata cttaatgcac actttatctt ttattgtaca aagaaatagt
     6481 gtacaaaaat ctttggtttc tatggagtac acctaccaga gactaccagt gtaaagtgat
     6541 aaataaaaat acaacctaaa tgcttttcta tgataata
//
