LOCUS       XM_001059437            3374 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus methyl-CpG binding domain 4 DNA
            glycosylase (Mbd4), mRNA.
ACCESSION   XM_001059437
VERSION     XM_001059437.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 16, 2024 this sequence was replaced by
            NM_001427248.1.
            
            On Jan 21, 2021 this sequence version replaced XM_001059437.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3374
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3374
                     /gene="Mbd4"
                     /note="methyl-CpG binding domain 4 DNA glycosylase;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 ESTs, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 113 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:680915"
                     /db_xref="RGD:1585874"
     CDS             161..1861
                     /gene="Mbd4"
                     /codon_start=1
                     /product="methyl-CpG-binding domain protein 4"
                     /protein_id="XP_001059437.3"
                     /db_xref="GeneID:680915"
                     /db_xref="RGD:1585874"
                     /translation="MESPSLGDNNVPSVTAGKSLVSDPPWDRCKEDVAVGLGGVGEDG
                     KDLVISSECGSLLQEPAASTLPSCTTVAECHKPVPCGWERVVKQRLSGKTAGRVDVYF
                     ISPQGSKFRSKRSLANYLLKTGETCLKPEDFDFTVLSKGGINPGYKHQSLSAPASQQP
                     NEADISKLNLRTRSKWKTDVLPLPGGNSESPDSNSLSNSNSARLLLKEHKGIQDADSG
                     KSRKPKIKVTVLKGIASQRTKQRCRKSPSDSTGRNRKRLCTVQKADTDSELVPQESRL
                     HRTVCPADACARATVSLVREAKGLGEEKSPSSDLRFTQVTSSITNKLYSTEAAGEATR
                     EATREQTFLESEEIRSKGEEEEAHLHIDILQSGSETPSCSQAKKHLTSETFREDSIPR
                     TQVEKRKTSLYFSSKYNKEALSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLISTI
                     FLNRTSGKMAIPVLWEFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIIKFSDE
                     YLTKPWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
                     "
ORIGIN      
        1 gctgtggcgt ctgtaactga agcggtggcg ggaaggttgc tgtgtggatt ggctgatttt
       61 cacgtcagtg tttggattcg gcccagtgtt ttgagttgtg ttttactcca cctcccggcc
      121 tggagctgca gctgcgcccc cgcggaccaa agcagccggg atggagagcc caagccttgg
      181 ggacaacaat gtcccctccg tcactgctgg aaagagccta gtttcagacc ctccctggga
      241 ccgctgcaag gaagacgttg ctgtcggact gggaggagtg ggtgaagatg gaaaggacct
      301 ggtgataagc agtgagtgtg gctcccttct ccaggagcct gctgcttcta ctctgcctag
      361 ttgtactaca gtggcagaat gccacaagcc tgtcccctgt ggatgggaaa gagttgtgaa
      421 gcaaaggtta tctgggaaaa ctgcaggaag agttgatgta tactttatca gcccacaagg
      481 atcaaagttc agatcaaaac gttcacttgc taattatctt ctcaaaactg gagagacttg
      541 tcttaagcct gaagattttg attttactgt actgtctaaa gggggcatca atccaggtta
      601 taaacaccaa agtttgtcag ctccagcttc ccagcagcca aatgaagctg acatttcaaa
      661 gctaaacctc aggacacgaa gcaagtggaa aacagacgta ttgcctctgc ccggtggtaa
      721 ttcagagtct ccagatagca acagcctgtc caactctaac tctgcccgtt tgctattgaa
      781 agaacataag ggcattcagg atgctgactc tgggaagagc agaaagccca aaataaaggt
      841 gactgttttg aaaggaattg caagtcagag aaccaaacaa aggtgcagga agagtccctc
      901 agattctact ggaagaaaca gaaaaagact atgtacagtt cagaaagcag atactgatag
      961 cgagctagtt ccacaggaaa gtcgactcca cagaactgtc tgccctgcag acgcctgtgc
     1021 aagggcgact gtcagcttgg ttagggaagc aaagggcctg ggagaagaaa aatcaccaag
     1081 ctcggatctt cgtttcacac aagtaacttc tagcatcaca aacaaattat attcaactga
     1141 agcagcaggt gaagcaacac gtgaagcaac acgtgagcag acctttttag aatcagagga
     1201 aatcagatcg aagggagaag aggaggaggc acatttgcat attgacattt tacagagtgg
     1261 ctctgaaaca cccagctgct cacaagccaa gaaacacttg acttctgaga catttcgaga
     1321 agacagcatc ccacgaacac aggtagaaaa aaggaaaaca agcctgtatt tttccagcaa
     1381 gtacaacaaa gaagctctta gccccccaag acgcaaagcc ttcaagaaat ggacccctcc
     1441 tcggtcacct ttcaatcttg ttcaagaaac acttttccat gatccatgga agctcctcat
     1501 ctcaactata tttctcaatc ggacctcagg caagatggcc atccccgtgc tgtgggagtt
     1561 tctagagaag tacccttcag ctgaagtggc ccggactgct gactggaggg acgtgtcaga
     1621 acttcttaag cctcttggtc tctatgatct ccgtgcaaaa accatcatca agttctcaga
     1681 tgaatatctg acaaagccgt ggaggtatcc gattgagctt catgggattg gtaaatatgg
     1741 caacgactcc taccggatct tttgtgtcaa tgagtggaag caggtgcacc ctgaagacca
     1801 caagttaaat aaataccatg actggctttg ggaaaatcat gagaaactaa gtctatctta
     1861 aagccgcctg tctgaagctt cctgtgcatt gctctgtgct tccactccta agggccctgt
     1921 ggtgtacagg catgtagttt cttcagttcg ttagaagcca tgcatgtctt aagcccctgc
     1981 caaagataga tctttgtcac taaatgttgt agacaaagaa atttgggaga aaaaaattgt
     2041 tgagtaacgg tcctaaaagt gtgctctgtt ggttggggat ttagctcagc agaagagcgc
     2101 ttgcctagcg agcgcaaggc cctgggttcg gtccccagct ctgaaaaaaa gaaaaaaaaa
     2161 aaaaaaaagt gtgctctgtt tagtttttcc agtgatgaaa ttcaacatgc cgatgctcaa
     2221 agccagttac cagcactcct gctgaggaaa agctgaacat ctttctgtac aaagtgatac
     2281 tgtcatgtgt ggaaagactg ccattcttat gggtattgga gtgttatagt ttaaataatg
     2341 aggcatatac tctaaaaaga gtcactaagt aaaaaccaaa ttgacctaca catggtggca
     2401 cacacctgta atcccagcac tcaagaggct gagggagaag ggtggaaagt tgagggccta
     2461 cctatactgc accagagaga ctgcctcaaa agcaaacagg gcagggccag ggaagtggcc
     2521 cagtaactga agtcacttgc tgccatgcct gatgacctga actccatccc tggaacccac
     2581 tcctgaaggc tgactcttat cctcactgaa ctcacatata catgttataa aacacataaa
     2641 tttcagaaat gatctggaga gggatggttc agtggtttag tatgttgtta cttttacaga
     2701 ggacctgaat ttgtttttta gcacccacat caggcagatc ataattgctt gtaacaactc
     2761 ctcctgggga tctgacacct tcttttggct tcattggata ccccagcaca tgtagcatat
     2821 atataattaa gtcctaatta cttaattgca gcttgaaaat taaatttcct caaggcaaca
     2881 tccactcaaa atgcataata ttctatccca tttcccttaa taaaatatgt tctgatatat
     2941 tcacccatgc cagtcgcggt ggtacactac tatagtccta acacttggga gtctggagag
     3001 gatcatgatg aaggccagca tgggctacat ggtaagaccc tatatcaaaa acaaaacaaa
     3061 aggtccactg gaggcacaca cagacaatga acagatgggt actgtaatgt gtctgcataa
     3121 tccctgcact tgggatgctg aggcaagagg accactgtga attcaaggca gcctggttta
     3181 tgtgagtgtg aaggtagctt tggttacaca gcaaaactct gcactaaaaa tacaagccaa
     3241 gcttgttgga ctaaataagc tatgtctgga gaagtgtctg tcctgtataa tgcaaaaatt
     3301 ctaaagatcc taatatactg tgaaacctat cattttgaat taggtactaa taaaatattt
     3361 ttattaaaaa ggaa
//
