LOCUS       NM_019149               3780 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus matrin 3 (Matr3), mRNA.
ACCESSION   NM_019149 XM_212889
VERSION     NM_019149.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3780)
  AUTHORS   Ishibashi,O., Hayashi,M., Horikawa,A., Owada,H., Miyamoto,R.,
            Mizukami,N. and Inui,T.
  TITLE     The Role of miR-217-5p in the Puromycin Aminonucleoside-Induced
            Morphological Change of Podocytes
  JOURNAL   Noncoding RNA 8 (3), 43 (2022)
   PUBMED   35736640
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3780)
  AUTHORS   Horikawa,A., Yoneda,T., Yaoita,E., Yamaguchi,K., Shigenobu,S.,
            Kuramochi,M., Yamate,J., Inui,T. and Ishibashi,O.
  TITLE     A novel splicing variant of small nucleolar RNA host gene 4 is a
            podocyte-selective non-coding RNA upregulated in response to
            puromycin aminonucleoside-induced podocyte injury
  JOURNAL   J Biochem 165 (5), 447-454 (2019)
   PUBMED   30597036
REFERENCE   3  (bases 1 to 3780)
  AUTHORS   Morchikh,M., Cribier,A., Raffel,R., Amraoui,S., Cau,J., Severac,D.,
            Dubois,E., Schwartz,O., Bennasser,Y. and Benkirane,M.
  TITLE     HEXIM1 and NEAT1 Long Non-coding RNA Form a Multi-subunit Complex
            that Regulates DNA-Mediated Innate Immune Response
  JOURNAL   Mol Cell 67 (3), 387-399 (2017)
   PUBMED   28712728
REFERENCE   4  (bases 1 to 3780)
  AUTHORS   Treiber,T., Treiber,N., Plessmann,U., Harlander,S., Daiss,J.L.,
            Eichner,N., Lehmann,G., Schall,K., Urlaub,H. and Meister,G.
  TITLE     A Compendium of RNA-Binding Proteins that Regulate MicroRNA
            Biogenesis
  JOURNAL   Mol Cell 66 (2), 270-284 (2017)
   PUBMED   28431233
REFERENCE   5  (bases 1 to 3780)
  AUTHORS   Cui,W., Dai,X., Marcho,C., Han,Z., Zhang,K., Tremblay,K.D. and
            Mager,J.
  TITLE     Towards Functional Annotation of the Preimplantation Transcriptome:
            An RNAi Screen in Mammalian Embryos
  JOURNAL   Sci Rep 6, 37396 (2016)
   PUBMED   27869233
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 3780)
  AUTHORS   Hibino,Y., Tsukada,S. and Sugano,N.
  TITLE     Purification and characterization of a DNA binding protein in a
            nuclear scaffold fraction from rat ascites hepatoma cells
  JOURNAL   Carcinogenesis 18 (4), 707-713 (1997)
   PUBMED   9111204
REFERENCE   7  (bases 1 to 3780)
  AUTHORS   Hibino,Y., Tsukada,S. and Sugano,N.
  TITLE     Properties of a DNA-binding protein from rat nuclear scaffold
            fraction
  JOURNAL   Biochem Biophys Res Commun 197 (1), 336-342 (1993)
   PUBMED   8250943
REFERENCE   8  (bases 1 to 3780)
  AUTHORS   Hibino,Y., Nakamura,K., Tsukada,S. and Sugano,N.
  TITLE     Purification and characterization of nuclear scaffold proteins
            which bind to a highly repetitive bent DNA from rat liver
  JOURNAL   Biochim Biophys Acta 1174 (2), 162-170 (1993)
   PUBMED   8357833
REFERENCE   9  (bases 1 to 3780)
  AUTHORS   Hibino,Y., Nakamura,K., Asano,S. and Sugano,N.
  TITLE     Affinity of a highly repetitive bent DNA for nuclear scaffold
            proteins from rat liver
  JOURNAL   Biochem Biophys Res Commun 184 (2), 853-858 (1992)
   PUBMED   1575753
REFERENCE   10 (bases 1 to 3780)
  AUTHORS   Belgrader,P., Dey,R. and Berezney,R.
  TITLE     Molecular cloning of matrin 3. A 125-kilodalton protein of the
            nuclear matrix contains an extensive acidic domain
  JOURNAL   J Biol Chem 266 (15), 9893-9899 (1991)
   PUBMED   2033075
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Feb 2, 2010 this sequence version replaced NM_019149.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: M63485.1, SRR26643429.53788.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-64                JAXUCZ010000018.1  27437824-27437887
            65-1152             JAXUCZ010000018.1  27447450-27448537
            1153-1214           JAXUCZ010000018.1  27453278-27453339
            1215-1256           JAXUCZ010000018.1  27454126-27454167
            1257-1369           JAXUCZ010000018.1  27454469-27454581
            1370-1422           JAXUCZ010000018.1  27454831-27454883
            1423-1548           JAXUCZ010000018.1  27456721-27456846
            1549-1674           JAXUCZ010000018.1  27457138-27457263
            1675-1842           JAXUCZ010000018.1  27457465-27457632
            1843-1974           JAXUCZ010000018.1  27457852-27457983
            1975-2018           JAXUCZ010000018.1  27459078-27459121
            2019-2382           JAXUCZ010000018.1  27459495-27459858
            2383-2605           JAXUCZ010000018.1  27462680-27462902
            2606-2727           JAXUCZ010000018.1  27463397-27463518
            2728-3780           JAXUCZ010000018.1  27466205-27467257
FEATURES             Location/Qualifiers
     source          1..3780
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..3780
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /note="matrin 3"
                     /db_xref="GeneID:29150"
                     /db_xref="RGD:3052"
     exon            1..64
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
     exon            65..1152
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
     CDS             241..2778
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /note="nuclear scaffold protein P130/MAT3"
                     /codon_start=1
                     /product="matrin-3"
                     /protein_id="NP_062022.2"
                     /db_xref="GeneID:29150"
                     /db_xref="RGD:3052"
                     /translation="MSKSFQQSSLGRDSQGHGRDLSAAGIGLLAAATQSLSMPASLGR
                     MNQGTARLASLMNLGMSSSLNQQGAHSALSSASTSSHNLQSIFNIGSRGPLPLSSQHR
                     GDTDQASNILASFGLSARDLDELSRYPEDKITPENLPQILLQLKRRRTEEGPTLSYGR
                     DGRSATREPPYRVPRDDWEEKRHFRRDSFDDRGPSLNPVLDYDHGSRSQESGYYDRMD
                     YEDDRLRDGERCRDDSFFGETSHNYHKFDSEYERMGRGPGPLQERSLFEKKRGAPPSS
                     NIEDFHGLLPKGYPHLCSICDLPVHSNKEWSQHINGASHSRRCQLLLEIYPEWNPDND
                     TGHTMGDPFMLQQSTNPAPGILGPPPPSFHLGGPAVGPRGNLGAGNGNLQGPRHMQKG
                     RVETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAA
                     VDYYTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGY
                     SDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV
                     DLSEKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDGAQKTENPAEG
                     KEQEEKSGEDGEKDTKDDQTEQEPSMLLESEDELLVDEEEAAALLESGSSVGDETDLA
                     NLGDVSSDGKKEPSDKAVKKDASATSKKKLKKVDKIEELDQENEAALENGIKNEENTE
                     PGAESAENADDPNKDASDNSDGQNDENKEDYTIPDEYRIGPYQPNVPVGIDYVIPKTG
                     FYCKLCSLFYTNEEVAKNTHCSSLPHYQKLKKFLNKLAEERRQKKET"
     exon            1153..1214
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
     exon            1215..1256
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
     exon            1257..1369
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
     exon            1370..1422
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
     exon            1423..1548
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
     exon            1549..1674
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
     exon            1675..1842
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
     exon            1843..1974
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
     exon            1975..2018
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
     exon            2019..2382
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
     exon            2383..2605
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
     exon            2606..2727
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
     exon            2728..3780
                     /gene="Matr3"
                     /gene_synonym="P130/MAT3; snhg4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggagcctcc gcgtcccgct cgctgagaga ggtatctctc cttttccctc tcccttcccc
       61 taagagttgt ctgctggttc tcagcttgaa gaagattcta cagtccttat tgatcctttt
      121 tcttggcgtt accatttttg aagcaaagtt aacctagctt tctagtttga gctttctttt
      181 tggccgtctt ttaaaacatt ttttttttga tctataaaat agacaagaga tagttctaca
      241 atgtccaagt cattccagca gtcatctctc ggtagggatt cacagggtca tgggcgtgac
      301 ctgtctgcag caggaatagg ccttcttgct gctgctaccc agtctttaag tatgccagca
      361 tctcttggaa ggatgaacca gggtactgca cgccttgcta gcttaatgaa tcttggaatg
      421 agttcttcat tgaatcaaca aggagctcat agtgcactgt cttctgctag tacttcttcc
      481 cataatttgc agtctatatt taacattgga agtagaggtc cactcccttt gtcttctcaa
      541 caccgtggag atacagacca ggccagtaat attttggcca gctttggtct gtctgctaga
      601 gacttagatg aactgagtcg ttatccagag gacaagatta ctcctgagaa cttgccccaa
      661 attcttctac agcttaaaag gaggagaact gaagaaggcc ctacattgag ttatggtaga
      721 gatggcagat ctgctacacg ggagccacca tacagagtac ctagggatga ttgggaagaa
      781 aaaaggcatt ttagaagaga tagttttgat gatcgtggtc ctagtctcaa cccagtgctt
      841 gattatgacc atggaagtcg ttctcaagaa tctggttatt atgacagaat ggattatgaa
      901 gatgacagat taagagatgg agaaaggtgt agggatgatt ctttttttgg tgagacctcg
      961 cataactatc ataaatttga cagtgagtat gagagaatgg gacgtggtcc tggcccctta
     1021 caagagagat ctctctttga gaaaaagagg ggcgctcctc caagtagcaa tattgaagac
     1081 ttccatggac tcttaccgaa gggttatccc catctgtgct ctatatgtga tttgccagtt
     1141 cattctaata aggagtggag tcaacatatc aatggagcaa gtcacagtcg tcgatgccag
     1201 cttcttcttg aaatctaccc agaatggaat cctgacaatg atactggaca cacaatgggt
     1261 gatccattca tgctgcagca gtcaacaaac ccagcaccgg gaattctggg accgccacct
     1321 ccttcatttc atcttggagg accagcagtt ggaccaagag gaaatctggg tgctggtaat
     1381 gggaacctac agggaccaag acacatgcaa aaaggcagag tggaaaccag ccgagttgtt
     1441 cacattatgg attttcagcg aggaaaaaac ttgagatacc agctattaca actggtagaa
     1501 ccatttggag tcatttcaaa tcatctgatt ctaaataaaa ttaatgaggc atttattgaa
     1561 atggcgacca cagaagatgc tcaggctgct gtggattatt atacaactac accagcatta
     1621 gtgtttggca agccagtgag agttcattta tcccagaagt ataagagaat aaagaaacct
     1681 gaaggaaaac cagatcagaa gtttgatcaa aagcaagaac ttggacgtgt gatacatctc
     1741 agcaatttac ctcattctgg ctattctgac agtgctgtcc tcaagcttgc agagccttat
     1801 gggaaaataa aaaattatat attgatgagg atgaaaagtc aggcttttat tgagatggaa
     1861 accagagaag atgcaatggc aatggttgac cactgtctaa agaaggcact ttggtttcag
     1921 ggaagatgtg ttaaagttga cttgtctgag aaatataaaa aactggtgct gaggattcct
     1981 aacagaggca ttgacttact gaaaaaagat aaatctcgga aaagatccta ttctccagat
     2041 ggaaaagaat ctccaagtga taagaagtcc aaaactgatg gtgctcagaa gactgagaat
     2101 ccagctgagg gtaaagaaca agaagagaag tcgggtgagg atggtgagaa agacaccaag
     2161 gatgaccaga cagaacagga gcccagtatg cttcttgaat ctgaagatga attgcttgtc
     2221 gatgaggaag aagctgcagc actactagaa agtggaagct cagtgggtga tgagactgat
     2281 cttgctaatt taggggatgt atcttctgat gggaaaaagg agccttcaga taaagctgtg
     2341 aaaaaagatg caagtgcaac atccaagaaa aaacttaaaa aggtggacaa gattgaggaa
     2401 cttgatcaag aaaatgaagc tgcattggaa aatgggatta aaaatgagga aaatacagaa
     2461 ccaggtgctg aatctgctga gaatgctgat gatccaaaca aagacgcaag tgataattca
     2521 gatggccaaa atgatgagaa caaggaggac tatacaattc cagatgagta tagaattgga
     2581 ccatatcagc ctaatgttcc tgttggtata gactatgtga tacctaaaac agggttttac
     2641 tgtaagctgt gttcactctt ttatacaaat gaagaagttg caaagaatac tcattgcagc
     2701 agccttcctc attatcagaa attaaagaaa tttctgaata aattggcaga agaacggagg
     2761 cagaagaagg aaacttaaga tgtacaagaa gcttaattat ttcaaagaaa acaatggttc
     2821 tttgatttta atgttaacct tttttaaata caatactgat agttagaaaa ctactgtact
     2881 cttttgtttt agtggaaaat aatagatgtc tgttcatgtg tttaagtgtt atagcaaaaa
     2941 gtacacatac ggttaagtta atgaaaaagt ttttgtttca tcagtgacaa cagacaaaag
     3001 tacttcctag agatttgact gttgtaagta agctatggaa aacaacttgc accactaaga
     3061 gaaagataac atagaaccat tcagaaaact gaaatttagt agtttaaggc ttcaaagaaa
     3121 tgtcaacttt tgattccatt caataaagta caaaaccaat tgtatttttt attacttttc
     3181 atctgaaaca ttccacattt taatctgagc cttgcagact tttcatttga ctttggaagc
     3241 tgtttcggtt gcattgcatt tttagagaac ttcattcatg tgagattgga attcaaatgc
     3301 aggtgcagtt ttcttttaat gtcatgctgt ttagatgata agatatatta agtaattggc
     3361 tttagatttg taattttttt cctctgagtt cctgctaggt tttgtattct agtagtcaat
     3421 gttatttcag tgaaatgtaa aaatattacc gttctctttg accagtatta atttcttgag
     3481 aacctattgc ttgtcacttg aatcctgtag ctgtcaaaca tctccggtat aagcaacatt
     3541 tgatttttga agtgtgtaaa ccatctatat tttcaagatg taattttaca tttctgcatt
     3601 ttaaaagttt ggccataatt ctagaagcac gcttctaatt catgtacctg cacatgtgac
     3661 ctttgtgagc agaaatttgc atgtataatc tgtgtttact tgtaactctc tggttatata
     3721 ctgcttatat ctgtggattc aagttactga agtgaatacc aataaaaaaa aaaacaacct
//
