LOCUS       NM_001106539            2292 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus matrilin 4 (Matn4), mRNA.
ACCESSION   NM_001106539 XM_001071275 XM_215932
VERSION     NM_001106539.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2292)
  AUTHORS   Malin D, Sonnenberg-Riethmacher E, Guseva D, Wagener R, Aszodi A,
            Irintchev A and Riethmacher D.
  TITLE     The extracellular-matrix protein matrilin 2 participates in
            peripheral nerve regeneration
  JOURNAL   J Cell Sci 122 (Pt 7), 995-1004 (2009)
   PUBMED   19295126
  REMARK    Erratum:[J Cell Sci. 2009 May 1;122(Pt 9):1471. Irintchev, Audrey
            [corrected to Irintchev, Andrey]]
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474005.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_215932.4, XM_001071275.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5756307, SAMEA5760384
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2292
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..2292
                     /gene="Matn4"
                     /note="matrilin 4"
                     /db_xref="GeneID:296358"
                     /db_xref="RGD:1309732"
     exon            1..123
                     /gene="Matn4"
                     /inference="alignment:Splign:2.1.0"
     exon            124..238
                     /gene="Matn4"
                     /inference="alignment:Splign:2.1.0"
     CDS             160..2034
                     /gene="Matn4"
                     /codon_start=1
                     /product="matrilin-4 precursor"
                     /protein_id="NP_001100009.1"
                     /db_xref="GeneID:296358"
                     /db_xref="RGD:1309732"
                     /translation="MKGPFCWPLPLLLLFLQSWETQLQPAGPRCYTGPLDLVFMIDSS
                     RSVRPFEFETMRQFLVGLLHSLDVGLNATRVGVIQYSSQVQSVFPLGAFSNREDMERA
                     IRAVVPLAQGTMTGLAIQYAMNVAFSEAEGARPSEERVPRVLVIVTDGRPQDRVAEVA
                     AQARARGIEIYAVGVQRADVGSLRAMASPPLDQHVFLVESFDLIQEFGLQFQGRLCGK
                     DLCAELEHGCQHLCVNAPGTFYCACNSGYKLAPDNRNCLAIDLCAEGTHGCEHLCVSS
                     VDSYFCRCRAGFALQQDQRSCRAIDYCSFGNHSCQHECVSTLVGPQCRCREGHDLLPD
                     GRSCQVRDFCNGVDHGCEFQCVSEGLSFHCLCPEGRRLQADGKSCDRCREGHVDLVLL
                     VDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAE
                     VKQAVLAVEYMERGTMTGLALRHMVEHSFSEVQGARPRDLNVPRVGLVFTDGRSQDDI
                     SVWAARAKEEGIVMYAVGVGKAVEEELREIASEPSELHVSYSPDFNTMTHLLENLKGS
                     ICPEEGISAGTELRSPCECESLVEFQGRTLGALESLTQNLARLTERLEELENQLASRK
                     "
     exon            239..808
                     /gene="Matn4"
                     /inference="alignment:Splign:2.1.0"
     exon            809..931
                     /gene="Matn4"
                     /inference="alignment:Splign:2.1.0"
     exon            932..1054
                     /gene="Matn4"
                     /inference="alignment:Splign:2.1.0"
     exon            1055..1177
                     /gene="Matn4"
                     /inference="alignment:Splign:2.1.0"
     exon            1178..1300
                     /gene="Matn4"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..1714
                     /gene="Matn4"
                     /inference="alignment:Splign:2.1.0"
     exon            1715..1867
                     /gene="Matn4"
                     /inference="alignment:Splign:2.1.0"
     exon            1868..1975
                     /gene="Matn4"
                     /inference="alignment:Splign:2.1.0"
     exon            1976..2292
                     /gene="Matn4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tagctgtctg gcattcccca cttagggcaa gctgcccacg ccgccgcgtt acctggtcca
       61 actacccagg aggctgggcc cgtcgttctg tagccgcacc tctgagctgt ccggcaggct
      121 caggctgtga cacttcggtt cttcatcctt ccaagcacca tgaagggccc tttttgctgg
      181 ccactgcctc tgttgctgct tttcttgcag tcctgggaaa cccagctaca gcctgcaggt
      241 cctaggtgct atactgggcc cctggatttg gtgttcatga ttgatagttc ccgcagcgtg
      301 cgccccttcg agttcgagac catgaggcag ttccttgtgg gcctcctcca cagcctggac
      361 gtgggtctga acgccacgcg cgttggtgtg atccagtatt ctagccaagt gcagagcgtc
      421 tttcccctgg gcgccttctc gaaccgcgag gacatggaac gcgccatccg cgcggtggtg
      481 ccgctggctc agggcaccat gaccggcctg gcgatccagt atgccatgaa cgtggccttc
      541 agcgaggccg aaggcgcgcg cccatcggaa gagcgagtgc cgcgcgtctt ggtcatcgtg
      601 acggacgggc gacctcaaga ccgagtggcc gaagtggccg ctcaagcgcg cgcccgcggt
      661 attgagatct atgcagtagg ggtgcagcga gccgacgtgg gctctctgcg cgccatggct
      721 tcaccaccgc tggaccagca tgtcttcttg gtggagtcct tcgatctcat ccaggagttt
      781 ggcctgcagt tccagggccg gctgtgtggg aaggacctgt gtgctgagtt ggagcatggc
      841 tgccaacacc tgtgtgtcaa cgccccagga acattctact gcgcctgcaa ctctggctac
      901 aagctagcgc cagataacag gaattgtttg gccatagatc tctgtgctga aggaacccat
      961 ggttgtgaac acctctgtgt cagttctgtg gactcttatt tctgtcgttg tcgagctggc
     1021 tttgcactcc agcaggacca gagaagctgc agggccattg actactgcag ctttggaaac
     1081 catagttgcc agcatgagtg tgtgagcact ttagtggggc cacagtgtcg ctgcagagaa
     1141 ggccacgacc tgctgcccga tgggagaagc tgtcaggtca gggacttctg caatggcgtg
     1201 gatcatggct gtgagttcca gtgtgtgagt gagggtcttt ccttccactg cctgtgccct
     1261 gaagggaggc gacttcaggc tgatggcaag agctgtgacc ggtgccggga gggccacgtg
     1321 gatcttgttc tcctggtgga tggctccaag agtgtgcgtc cacagaactt cgagctggtg
     1381 aagcgcttcg tgaaccagat tgtggatttc ctcgacgtgt cccctgaggg cacacgtgtt
     1441 gggctggtgc agttctctag ccgggtgcgc actgagttcc ctctgggccg ctatggcacc
     1501 gcggctgagg tgaagcaggc agttttggcc gtcgagtaca tggagcgcgg caccatgaca
     1561 gggctggcac tgcgtcacat ggtggagcac agtttctcag aggtgcaggg cgcgcggcct
     1621 cgagacctca acgtgcctcg tgtgggattg gtgttcactg acggccgctc tcaggatgac
     1681 atttctgtgt gggcagctcg tgccaaagag gaaggtatcg tcatgtatgc tgtgggcgtg
     1741 ggcaaggctg tggaggaaga gctgcgcgag atcgcatccg aaccatcgga actgcacgtg
     1801 tcctactctc cggactttaa caccatgaca catctgctgg agaatctcaa aggcagcatt
     1861 tgcccagagg agggcatcag cgcggggaca gagcttcgga gtccctgcga atgcgaaagc
     1921 ctcgtggagt tccagggacg cacgctgggg gcgctcgaga gcctgacgca gaacctggcc
     1981 cggctgacag agcgcctgga ggagctggag aatcagctgg ctagccggaa gtgagggtcg
     2041 catgctgtcc gagcagccag cgaggcagag cccgagcctg gaccgtccgg gagggggcgc
     2101 tggcgggccc caagcgctgc cttcgagctg ggctcacctg gaccaggagc cagatttagg
     2161 ggagagggac aaggggatgg ggaggtgctg gtggggaagg actgctacac tcgccgcgag
     2221 ctttgttgga tttctttttt gtttttcttt tcttaaaaaa aaaaaacaaa aaacccacgt
     2281 tggtcttcac gg
//
