LOCUS       XM_216941               3636 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus matrilin 2 (Matn2), transcript variant
            X1, mRNA.
ACCESSION   XM_216941
VERSION     XM_216941.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 10, 2024 this sequence was replaced by
            NM_001427155.1.
            
            On Jan 21, 2021 this sequence version replaced XM_216941.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3636
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3636
                     /gene="Matn2"
                     /note="matrilin 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 47 ESTs, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 86 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:299996"
                     /db_xref="RGD:1305353"
     CDS             272..3136
                     /gene="Matn2"
                     /codon_start=1
                     /product="matrilin-2 isoform X1"
                     /protein_id="XP_216941.8"
                     /db_xref="GeneID:299996"
                     /db_xref="RGD:1305353"
                     /translation="MEKMLVGCLLMLGQLLLVLPVGARERRPQDRFPSRGRRMHPQTA
                     LLESSCENKRADLVFIIDSSRSVNTHDYAKVKEFILDILQFLDIGPDITRVGLLQYGS
                     TVKNEFSLKTFKRKSDVERAVKRMRHLSTGTMTGLAIQYALNIAFSEAEGARPLRENV
                     PRVIMIVTDGRPQDSVAEVASKARNTGILIFAIGVGQVDLNTLKAIGSEPHKDHVFLV
                     ANFSQIESLTSVFQNKLCTVHMCSVLEHNCAHFCINTPGSYTCKCKQGYILGPDQKTC
                     RIQDLCATEDHGCEQLCVNMLGSFVCHCYSGYTLAEDGKQCTAVDYCASENHRCEHEC
                     VNAEGSYLCRCHEGFALNVDKKTCSKIDYCASSDHGCQHECVNAQTSAFCRCLKGFML
                     NPDRKTCRRINYCALNKPGCEHECVNTEEGHYCRCRRGYTLDPNGKTCSRVDHCAQQD
                     HGCEQLCLNTEESFVCQCSEGFLINDDLKTCSRADYCLLSNHGCEYSCVNTDKSFACQ
                     CPEGHVLRSDGKTCAKLDSCALGDHGCEHSCVSSEDSFVCRCFEGYVLRDDGKTCRRE
                     DVCQAVDHGCEHLCVNSGESYICKCLEGFRLAEDGKRCRRKDVCKSIQHGCEHICVNN
                     GNSYLCRCSEGFVLAEDGRHCKRCTEGPIDLVFVIDGSKSLGEENFEIVKHFVTGIID
                     SLAVSPKAARVGLLQYSTQVRTEFTLKGFSSAKDMKKAVAHMKYMGKGSMTGLALKHM
                     YERSFTQVEGARPLSTRVPRAAIVFTDGRAQDDVSEWARKAKANGITMYAVGIGKAIE
                     EELQEIASEPIDKHLFYAEDFSTMGEISEKLKLGICEALEDSDGRQDSPAGDLPRQVH
                     QPTESEPVTISIRDLLSCSNFAVQHRYLFEDNLSRSTQKLLHSTQSSGNPREETQDQC
                     KCENLIQFQNLANEEVRKLTQRLEEMTQRMEALENRLRYR"
ORIGIN      
        1 accgcctcct cgcgccgccc ttgcagggag ccttgcaggc agccagcgag cgcggagagc
       61 gctctggaat gggacttgaa ggcggcggct taggatacgg cgttggcgcg ggcttcttgg
      121 tcgcgtcccg ggagcggtgc ccaaggagct ctgcggtcct ctgtggggcg aggcggcgga
      181 caacggagac ggatcctcac ggctgcgccc ctgcttcact tccccggtgc tggtggcggt
      241 ggctgcagct gcagacctgc tcctcttgaa gatggagaag atgttggtgg ggtgcttgct
      301 gatgcttggg cagctcctcc tggtcctccc agttggagcc agagagcgtc gtccccaaga
      361 caggttcccc tccagaggcc gcaggatgca tccgcagact gcactgctgg agagttcctg
      421 tgagaataag cgggcagatc tggtgttcat cattgacagc tcccgaagtg tcaacaccca
      481 tgactatgca aaggtcaagg agttcattct ggatatcctg cagttcttgg atattggtcc
      541 tgacattacc cgagtaggtc tgctccaata tggcagcaca gtcaagaatg agttctccct
      601 gaagaccttt aagaggaagt ctgatgtcga gagggctgtc aagagaatga ggcatctatc
      661 cacaggcacc atgacagggc tggccatcca atatgccctt aacattgcct tctcagaagc
      721 agagggggcc cggcccttgc gggagaatgt gccacgggtc ataatgattg tgactgatgg
      781 gaggcctcag gactcagtag ctgaggtggc ttccaaggcc cggaacacag gcatcctgat
      841 atttgccatc ggtgtgggtc aagtggacct gaatacgcta aaggctatcg ggagtgagcc
      901 ccacaaggac catgtcttcc tggtggccaa tttcagccag attgagtcct tgacctcggt
      961 gttccagaac aaattgtgca cggtccacat gtgcagcgtc ttggaacaca actgtgccca
     1021 cttctgcatc aacacgcctg gctcgtacac ctgcaagtgc aagcaagggt acattctcgg
     1081 cccggatcag aagacgtgca gaatccagga tctgtgtgcc acagaggacc acggctgtga
     1141 gcagctgtgc gtgaacatgc tgggttcctt cgtctgccat tgctacagtg gctacaccct
     1201 ggctgaggat gggaagcaat gtacagctgt ggactactgt gcctcagaaa atcacagatg
     1261 tgagcacgag tgtgtaaatg ctgaagggtc ctacctgtgc aggtgccacg aaggatttgc
     1321 tcttaatgta gacaagaaaa catgctcaaa gatagactac tgtgcctcct cggatcatgg
     1381 atgtcagcat gagtgtgtca atgcccagac atctgctttc tgccgctgcc tgaaaggctt
     1441 catgctaaat ccagacagga aaacctgccg aaggatcaac tactgtgctc tgaacaaacc
     1501 aggctgtgag cacgagtgtg tgaacacaga ggagggtcac tactgccgct gccgtcgggg
     1561 ctacactctg gatcccaatg gcaagacctg cagccgggtg gaccactgtg cacagcagga
     1621 ccatggctgt gagcagctgt gcctgaacac ggaggagtcc tttgtctgcc agtgctccga
     1681 aggcttcctt attaacgatg acctcaagac ctgctccagg gcagattact gcttgctgag
     1741 caaccacggt tgtgaatact cctgtgtcaa caccgacaag tcctttgcct gccaatgtcc
     1801 tgaaggtcac gtgctccgga gcgacgggaa gacctgtgca aaactggact cttgtgcttt
     1861 gggggaccat ggttgtgaac attcatgcgt aagcagtgag gactcattcg tgtgtcggtg
     1921 ctttgaggga tatgtccttc gtgatgatgg gaagacctgc agaagggaag atgtctgcca
     1981 ggctgtagac catggctgtg agcacctttg tgtgaacagt ggcgaatcat acatctgcaa
     2041 gtgcctggag ggattcaggc ttgctgagga tgggaaacgc tgcaggagga aggatgtctg
     2101 caagtccatc cagcatggct gtgagcacat ctgtgtgaac aatgggaatt cctatctgtg
     2161 caggtgctca gagggctttg tcctcgctga ggacggaagg cactgcaaga gatgcactga
     2221 aggcccaatt gacctagtct ttgtgattga tggatccaag agccttggag aagagaattt
     2281 tgagattgtg aagcattttg tcactgggat catagattcc ttggcagttt cccccaaagc
     2341 tgctcgcgtg gggctgctgc agtattccac acaggtccgc acagagttta ccctgaaggg
     2401 cttcagctca gccaaggaca tgaaaaaagc tgtggcccac atgaaataca tgggcaaagg
     2461 ctctatgact gggctggccc tgaaacacat gtatgagaga agttttaccc aagtagaagg
     2521 agccaggccc ctctccacac gggtgcccag agcagccatt gtgttcacgg acggacgggc
     2581 tcaggatgat gtctccgagt gggccaggaa agccaaggcc aatggtatca ctatgtatgc
     2641 tgttgggata ggaaaagcca ttgaggaaga actacaggag attgcctctg agcccattga
     2701 caagcatctc ttctatgcag aagacttcag cacaatgggt gaaataagtg aaaagctgaa
     2761 gctaggcatc tgtgaagctc tagaagactc tgatggaaga caggactcac cagcagggga
     2821 tctgccaagg caggtccacc agccaacaga atctgagcca gtcaccataa gtatcagaga
     2881 cctactttcc tgttctaatt ttgcagtgca acatagatac ctgtttgaag acaatctttc
     2941 acggtctaca caaaaactct tgcactcaac acaatcttca ggaaaccctc gggaagaaac
     3001 ccaagaccaa tgcaaatgtg aaaaccttat acagttccag aaccttgcaa atgaagaagt
     3061 aagaaaatta acccaacgct tagaagaaat gactcaaaga atggaagcct tggaaaatcg
     3121 cctaagatac agatgaagac tagaagtgct tttatatctg tatttgtaca acattgtaaa
     3181 acggatttta acacaggtag tggagcctga aagctcatac cataagtaga tctacaagct
     3241 ataaagcaaa atacaaccag tacagaagac actggattgc ttgactgctg gacaagagaa
     3301 aatggagaca ttgaggtgtc taaatccaat gggggtgggg ggaggaatcc tgagtttacc
     3361 agaataagct gtgcagggtc ccatgatgtt ctgtggacat gacttccttc tgcctcaaca
     3421 ctgaaatttc atttgacaac tgaagtatct taattcagca gaaaactgac tctacaaatt
     3481 gctttttttt ttgtactgca atttaccttg atgtgtatac agacatgtgc ataagtcaca
     3541 gggacctgtg ttctgtaata agttgaattt ctacacaata ttaaagttca ccactccaga
     3601 aaagaatgtt gagtaaagtt cctattttaa atttga
//
