LOCUS       XM_235936               2989 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus microtubule associated tyrosine
            carboxypeptidase 2 (Matcap2), transcript variant X1, mRNA.
ACCESSION   XM_235936
VERSION     XM_235936.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_235936.11.
            
            On Jan 21, 2021 this sequence version replaced XM_235936.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2989
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2989
                     /gene="Matcap2"
                     /note="microtubule associated tyrosine carboxypeptidase 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 11 ESTs, 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:315473"
                     /db_xref="RGD:1561444"
     CDS             658..2529
                     /gene="Matcap2"
                     /codon_start=1
                     /product="putative tyrosine carboxypeptidase MATCAP2
                     isoform X1"
                     /protein_id="XP_235936.7"
                     /db_xref="GeneID:315473"
                     /db_xref="RGD:1561444"
                     /translation="METRAFNIFPPPFLSMVSIAGAPPAASTFGGAEFGKKAGSSPSN
                     GVAATSPWRVLSAEARWNHPLEQTWSSTLRCRSCPIWSRATLREFSSVRPAGLGFGPG
                     GTMLESIRVTEKLHWPEHELAKKFVLSAEEALTIDSKRSFSNLSSGVLKDTFTTGTSS
                     YNVLLQSKEERKHHSQKRFSSAHSKQHRKPSKSPSSSHSKDPSRTPALVPVTSTGTWY
                     CLDRQSAVLVTSSVPSPVKFTRDISVTGSGLALPPKPKNKVKRRNLTPLPKPKQQPQL
                     CRSFEKGDDFSGKKLCILTAIKPINLEKEKLRFFKSDYTYNPQFEYANPSLPGVLAKH
                     SHASDRFLKQSINIMELTLQKYGSYEKFEQATGGSLLSKTRIWSHVRKYMMKEGCLGE
                     IVVHLTEDLLSRASMTVVNGCPTLTINISTAREHWLEGMLRHEIGTHYFRGINNLQQP
                     WNSWIGRKKHELKPNNPTEEGLASIHSVLFRKDPFLWRAALLYYTVYQASQMSFCELF
                     KDIGRFVKDPNTRWDYCVRAKRGWTDTSQPGCFSKDQVYLDGILQILRFRESIDFHLL
                     TALGKVSYEDVDRLKELAVTENMRVPHFLHDHSRYMEHLEKIMEVNELTDAELKHLI"
ORIGIN      
        1 ttccagaaga gcgacatttg catcaagacc tgaatgaagt gaggaaggca ttctgtagat
       61 aaggagcatt ccaagtggga agaatcacaa atgacaatgg ccatgtggta gaacagtatg
      121 tagtgcgtct ctaggacagt gagagcatag taggagatga catcaaagag gtgagcagag
      181 ccaagtcata aagaacgtca tgagtagttc atgagcagag tggcatgatc tctgtcagca
      241 ggctccctct gccactgggg tttgaaaaca gagtcatggt gagactacaa gggtcatcca
      301 ggactcagct tcggaacctg agggttgaga tgccggatgg ggccatgtaa ctgaacgtgc
      361 ggtttgggaa aaattttgtc aacaataaaa cattccagga caaaagattg gttccacatc
      421 aaatgtactg agtctggagc acctctggta gtgctgatca gcactgcagc aagtgatgtc
      481 accacagcgc tggctctgag cacaaatgta ttttagattg tgtgtggtgt cgcccatcaa
      541 caccagtgaa tgccacctga aacaccccag tgtgaattct acacggtttg atgttaagag
      601 cagcagtgct tatatgaggt tttctgctct tacggaacat aacgtgatgg attaattatg
      661 gaaacaaggg cttttaatat ttttccacca cctttcctca gcatggtgtc aatcgcagga
      721 gcgcctccag cggcgagcac gtttggtggc gcagagttcg ggaagaaggc aggatcgtct
      781 cctagcaacg gggttgcagc gacgtcaccg tggcgggttc ttagcgctga ggccaggtgg
      841 aaccaccctc tggaacagac gtggtcctcc accttgcgct gccggtcctg ccctatctgg
      901 tcccgagcta ccttacggga gttttcgtcc gtgcggcccg ccggcctggg ctttggccct
      961 ggcgggacga tgctggagtc tattcgcgta acggaaaagc ttcactggcc tgagcatgaa
     1021 cttgctaaga agtttgttct aagtgcagaa gaggcattga ccattgacag caagagaagc
     1081 ttttccaatc tgtcctctgg agttctcaag gacactttca caactggaac cagtagttac
     1141 aatgttctac ttcagagcaa ggaggagaga aagcaccatt cacaaaagcg gttttcctct
     1201 gcccactcca aacaacatag aaagcccagc aaatctccta gttcctctca tagcaaagat
     1261 cctagcagga cgccagccct ggtgcctgtg acaagcaccg gtacttggta ctgcctagac
     1321 aggcagtctg ctgttcttgt cactagttca gtaccaagtc ctgtaaagtt tacccgtgat
     1381 atctctgtta caggaagcgg cctcgcactg ccacccaaac cgaaaaacaa ggtcaaacgg
     1441 cgcaacctga cccctcttcc aaagccaaag cagcagcctc agctgtgcag aagctttgag
     1501 aaaggagatg acttttctgg gaaaaagctc tgtatattga ccgctataaa gcccatcaac
     1561 ctggagaagg aaaagctgag gttcttcaag tctgactaca cttacaaccc tcagtttgag
     1621 tacgccaatc cttctctgcc aggcgtgtta gccaagcaca gccacgcctc tgaccgcttc
     1681 cttaagcagt ccatcaatat tatggagctg actttacaga aatatggaag ttatgaaaaa
     1741 tttgaacaag ctactggtgg tagcttgttg tctaaaaccc gtatctggag tcatgttagg
     1801 aagtacatga tgaaggaagg ctgcctggga gagattgtag ttcatctcac tgaagacctg
     1861 ctttccaggg catccatgac agtggtaaac ggatgtccga ctctaacgat caatatttct
     1921 actgcacgag agcactggct ggagggcatg ctgaggcatg agataggcac acattacttt
     1981 cggggtatta acaaccttca gcaaccctgg aacagttgga ttggccgcaa aaaacacgag
     2041 ctaaagccaa acaaccctac ggaggaagga ctggcaagca ttcacagtgt cctgttcaga
     2101 aaagacccct ttctgtggag ggccgccctc ctgtactaca cagtctatca agccagccag
     2161 atgtctttct gtgaactctt caaagatatt ggcaggtttg tcaaggaccc aaatacaaga
     2221 tgggactatt gtgtaagagc caagagggga tggactgaca cgtcccagcc agggtgtttc
     2281 agtaaagacc aggtgtactt ggatggaatc cttcaaatcc ttcgattcag agagtccata
     2341 gactttcacc tgctgactgc cctgggcaag gtatcttacg aagatgtgga tcgcttaaaa
     2401 gaattggcag ttactgagaa catgcgagtc ccacatttcc ttcatgatca cagccggtac
     2461 atggagcact tggagaagat catggaggtg aacgagctga cagatgctga gctgaaacac
     2521 ctcatctaag cagcagagcc cgctcctcgc ggctgttagc agctagggca ccgggtacct
     2581 gcagaacgag aggaggagag ccgctgacct ctgcttgctg aagaccagct ctcaggatcc
     2641 agctgaaatt ctaggttatg ttagacctga aactattttc ctaaaacact tctgtaggct
     2701 gcgggtggaa atcatgtctc ttttcattgc gatctctcca gagacaaatg aggattctgc
     2761 tgcgatgact ccaggatgag ttgtagacct gcgcaccaag gccagctctg gactggaggt
     2821 agccaaatcc cgctctgctg tgtaaatgcc aaggttctat ttcctctgct aaacagtggg
     2881 agttgttgtt ctttgaaata cccattttgt aacaccccag aaggctagca atatctaaga
     2941 gttcttattt ttcttatttt aagtgatatt aaaaggagat tgaaaattt
//
