LOCUS       NM_001044292            2003 bp    mRNA    linear   ROD 14-NOV-2024
DEFINITION  Rattus norvegicus microtubule associated tyrosine carboxypeptidase
            1 (Matcap1), transcript variant 1, mRNA.
ACCESSION   NM_001044292 XM_001067108 XM_001067155 XM_001067199 XM_001067251
VERSION     NM_001044292.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC098942.1.
            
            On or before Aug 24, 2006 this sequence version replaced
            XM_001067108.1, XM_001067155.1, XM_001067251.1, XM_001067199.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098942.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132263, SAMD00132268
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q11"
     gene            1..2003
                     /gene="Matcap1"
                     /gene_synonym="Kiaa0895l; Matcap"
                     /note="microtubule associated tyrosine carboxypeptidase 1"
                     /db_xref="GeneID:688736"
                     /db_xref="RGD:1585272"
     exon            1..444
                     /gene="Matcap1"
                     /gene_synonym="Kiaa0895l; Matcap"
                     /inference="alignment:Splign:2.1.0"
     exon            445..1061
                     /gene="Matcap1"
                     /gene_synonym="Kiaa0895l; Matcap"
                     /inference="alignment:Splign:2.1.0"
     CDS             501..1907
                     /gene="Matcap1"
                     /gene_synonym="Kiaa0895l; Matcap"
                     /EC_number="3.4.17.17"
                     /note="microtubule-associated tyrosine carboxypeptidase"
                     /codon_start=1
                     /product="microtubule-associated tyrosine carboxypeptidase
                     1"
                     /protein_id="NP_001037757.1"
                     /db_xref="GeneID:688736"
                     /db_xref="RGD:1585272"
                     /translation="MVLDSGTQVYEQAPPSPPASSPSQHHKLKPSNRNGPPLYPWPQS
                     LAMPLALAVPSALQHQTMWQTFSKLHLEQRSHMKRSESTYSVNSTGRRGRGKAPLGRG
                     CDPGGGTLRPAASLPHIAKIRKDVVSGSNKSPCMLVALRPTNMDQEREKFFQSHYAYN
                     PQFEYQEPMPMSVLEKYQEASGQFMHQAVGIIKAVLEKFGTYENFEAATGGQLLTKCQ
                     IWSIVRRYMQKEGCVGEVVVQLSEDLLSQAVMMVENSRPTLAINLTGARQYWLEGMLR
                     HEIGTHYLRGVNNSRQPWHSTEGRQQYGLRPANPTEEGLASLHSVLFRKQPFLWRAAL
                     LYYTIHQAAHMSFRQLFQDLEQYVQDEDVRWEYCVRAKRGQTDTSLPGCFSKDQVYLD
                     GILRILRHRQTIDFQLLTSLGKVSYEDVEQLRPHGVLDKTRVPHFMKDLDRYRQQLEH
                     IMTTNRLDEAELGRLLPD"
     exon            1062..1205
                     /gene="Matcap1"
                     /gene_synonym="Kiaa0895l; Matcap"
                     /inference="alignment:Splign:2.1.0"
     exon            1206..1338
                     /gene="Matcap1"
                     /gene_synonym="Kiaa0895l; Matcap"
                     /inference="alignment:Splign:2.1.0"
     exon            1339..1644
                     /gene="Matcap1"
                     /gene_synonym="Kiaa0895l; Matcap"
                     /inference="alignment:Splign:2.1.0"
     exon            1645..1742
                     /gene="Matcap1"
                     /gene_synonym="Kiaa0895l; Matcap"
                     /inference="alignment:Splign:2.1.0"
     exon            1743..1978
                     /gene="Matcap1"
                     /gene_synonym="Kiaa0895l; Matcap"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tagggggttc atgcacggtg gtacacctaa tcctggctga agtcctaata ttctggcagc
       61 atctcgccta tgcagacatc tgctctcttt gtggactgcg tcccccgaac cctgggctcc
      121 cgtggagtac tcagtaaatg gtttcactgc cctctctagt cactttagaa gcccggaaat
      181 tcgtggagag ggaagtctag gaccagaccg gatccaggga cctatagagg cagtgaattc
      241 cgacctcttc gcacgcctgg ctccgcccac agtgagttta agcacgccct acggtggaga
      301 caggcgtgtc caagacagtg cgtcttcctg tgagcgtgcg cgcccccgag tgcgcgtgtc
      361 tttggcgcgg gctcccatgg tctcggcggc cagcgatcgg ctttgaagag ctggaactgc
      421 ggacagcaaa agaggcgtga tcagaggtca acagtctggg aagttgtcac gacagaactg
      481 gatgtgaccc tcaggagaga atggtactgg actcggggac ccaggtgtat gagcaggcac
      541 cccccagccc acctgccagt tccccatctc agcaccataa gctgaagccc tcaaaccgaa
      601 atgggccacc cctgtatccc tggcctcagt ccctggctat gcccttggct ttggcagttc
      661 cctcagcact gcagcaccag actatgtggc agaccttctc aaagctgcac ttggaacagc
      721 gtagccacat gaagcgcagc gagagcacct acagtgtaaa tagtactggc cggcgggggc
      781 gtggcaaagc cccacttgga cggggatgtg atccaggtgg agggacccta cggcctgcag
      841 cctccttacc tcacattgct aagattcgaa aggatgtagt cagtggtagc aacaagagcc
      901 cctgtatgtt ggtggccctg cggccaacta acatggacca ggaacgggaa aagttcttcc
      961 agtctcatta tgcctacaat ccacagttcg agtatcagga accaatgcca atgagtgtgc
     1021 tggagaagta ccaggaggcc tctgggcagt tcatgcatca ggcagttggc atcattaagg
     1081 ctgtcctgga gaagtttggc acttatgaaa actttgaggc tgccacaggg ggtcagctgc
     1141 tgaccaagtg ccaaatttgg tccattgtgc gcagatacat gcagaaggag ggctgtgttg
     1201 gggaggttgt tgtacaactg agtgaagatc tgctgtccca ggcagtgatg atggtggaga
     1261 acagccgacc cacattggcc atcaacttga ccggagcccg ccagtactgg ttggagggca
     1321 tgcttcggca cgagataggc acccactacc tgcgtggtgt gaataattcg cgacaaccat
     1381 ggcacagtac tgaaggcaga cagcaatacg gccttcggcc agccaatccc actgaggagg
     1441 gcctggccag cctgcatagt gtgctgtttc gaaagcaacc gttcctgtgg cgtgccgccc
     1501 tgctctacta taccatccac caggcggcgc acatgtcctt ccgccagctc ttccaggatc
     1561 tggagcaata cgtgcaagat gaggatgtac gctgggagta ctgcgtccgt gccaagcgag
     1621 gacagacgga tacctcactg ccaggctgct tcagcaagga ccaggtgtac ctggatggca
     1681 ttttgcgcat cctgcggcac cgtcagacca tcgatttcca gctgctgacc tcgctgggca
     1741 aggtctccta tgaagatgtg gaacaactgc gaccccatgg ggtactagat aaaaccagag
     1801 tgccccactt catgaaggac ttggatcgtt accggcagca gctggaacac atcatgacta
     1861 ccaaccggct agatgaagcg gagctgggcc gcctgctgcc tgactgatat tggctaaggg
     1921 ttatagacag aagctcttgc agaggtctca gatcagaata cgaagttctt tatggttcaa
     1981 aaaaaaaaaa aaaaaaaaaa aaa
//
