LOCUS       XM_003750699            3402 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus methionyl-tRNA synthetase 2,
            mitochondrial (Mars2), transcript variant X1, mRNA.
ACCESSION   XM_003750699
VERSION     XM_003750699.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003750699.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003750699.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3402
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3402
                     /gene="Mars2"
                     /note="methionyl-tRNA synthetase 2, mitochondrial; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 13 ESTs, 4 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:100911305"
                     /db_xref="RGD:1311527"
     CDS             575..2335
                     /gene="Mars2"
                     /codon_start=1
                     /product="methionine--tRNA ligase, mitochondrial isoform
                     X1"
                     /protein_id="XP_003750747.1"
                     /db_xref="GeneID:100911305"
                     /db_xref="RGD:1311527"
                     /translation="MLRQCALWVLTRTPAGRGCRRYSSCSPSASGDAREARAYFTTPI
                     FYVNAAPHIGHLYSALLADALCRHRRLRVPGSGSTRFSTGTDEHGLKIQQAAATAGLA
                     PIELCDRVSAQFLQLFREAGISSTDFIRTTEARHRVAVQHFWGVLEARGLLYKGIYEG
                     WYCASDECFLPEAKVTRQVGPSGDPCPVSLESGHPVSWTKEENYIFKLSQFREPLQRW
                     LRNNPQAITPEPFHQVVLQWLEEELPDLSVSRRSSHLHWGIPVPGDDSQTIYVWLDAL
                     VNYLTVVGYPDADFKSWWPATSHIIGKDILKFHAIYWPALLLGAGLRPPHRICVHSHW
                     TVSGQKMSKSLGNVVDPRTCLDRYTVDGFRYFLLRQGVPNWDCDYYDEKVVKLLDSEL
                     ADALGGLLNRCTAYRINPSGTYPSFCAACFPSEPGLMGPSVRVQAEDYALVNAVATLP
                     KLVAGYYNDFQIYKALEAVSSCVRQTNGFVQRHAPWKLTWESPADAPWLGTVLHVALE
                     CLRVFGTLLQPVTPNLADKLLSRLGVSTTERSLGELYFLPRFYGHPCPFEGRKLGPDT
                     GLLFPRLDQSRTRLVKAHRT"
ORIGIN      
        1 tccttatctg cacgtctgtg actcggcact ccgatgcctg gatgattctc aaatcaaccc
       61 ttaaggctca gcaaaatgtt cagacacgtt atttcctttt ctcccgtgct tatccttccc
      121 taaagtgctc taggaaatta tttttccttt ctttcagatt tatttagatt ctgagataaa
      181 cgccggattt gtgccttgct atatgacagt taatggattt gggaaaatac ctcaatataa
      241 aaatcttgcc aacaagttca gtccagaacc gattagttca gttcagatcc acagcagatc
      301 ccaacgagta aaactgcaca acactcgggc tacgctctcc tttcaccaac tgccctgaca
      361 cggaacccat tagccgacta ctcaaaaact cccgccggcc agcggccctt gcgcgctgca
      421 ggaagcctgt ggaggcaggc gtgggcgagg ctacaggagt cactgctcgt cgttcattgg
      481 cttccgcgcc ggaagctgcg gtgccgccca gctgcgcacg cgccctctca cgtgcttggg
      541 aacgccgcct tcagtgctgg ggccggctgg caccatgctg cggcagtgcg ctctgtgggt
      601 gctgacgcgc accccggccg gccgcggctg tcgccgctac agttcgtgct cgccgagcgc
      661 tagtggcgac gctcgggaag cgcgggccta cttcaccaca cccatcttct acgtgaacgc
      721 cgcgccgcac atcgggcacc tgtactccgc gctgctggcc gacgccctgt gccgccaccg
      781 tcgtctccga gttcccggct ctgggtccac gcgtttttct accggtacgg acgagcacgg
      841 cctgaagatc cagcaggcgg cagccaccgc gggcctggcc ccgatcgagc tgtgcgatcg
      901 agtgtctgcc cagttcctgc agcttttccg ggaggctggc atctcctcca ccgactttat
      961 ccgcaccacg gaggctcggc accgggtagc ggtgcagcac ttctggggtg tgctggaggc
     1021 ccggggtctg ctttacaaag ggatctatga agggtggtat tgcgcctcgg atgagtgttt
     1081 cctgcctgag gccaaggtca ctcggcaggt gggtccgtcc ggggatcctt gtcctgtctc
     1141 tctcgagagc ggacaccctg tctcctggac caaggaagaa aattacattt tcaagctttc
     1201 tcagttccga gaaccactcc agcggtggct tcgaaacaac cctcaggcga tcacaccgga
     1261 accgttccac caggtagttc ttcagtggct ggaggaggag ctgcctgatt tgtcggtttc
     1321 tcggaggagt agccatctgc actggggcat tccagttccc ggggacgact cgcagactat
     1381 ctacgtgtgg ctggatgccc tggtcaacta cctcactgta gttggctacc cggatgcaga
     1441 tttcaagtct tggtggccag caacatctca tattatcggt aaggacattc tcaaatttca
     1501 tgctatttat tggcctgccc ttctcctagg ggcagggttg aggccaccac atcgcatctg
     1561 tgtccactcg cactggacgg taagtggcca aaaaatgtcc aagagcttgg gcaacgtggt
     1621 ggatcccagg acttgccttg atcgctatac tgtggatggc ttccgctact ttcttcttcg
     1681 gcagggcgtt cccaactggg actgcgacta ctatgatgag aaggtggtta aattgctgga
     1741 ctctgagctg gcagatgcct taggagggct tttaaaccgg tgcactgcct acagaataaa
     1801 cccttctggg acctacccat ctttctgtgc tgcctgtttc cccagtgagc cggggttaat
     1861 ggggccgtca gtccgtgtgc aagcagaaga ctacgcactt gtaaatgcag tggccacctt
     1921 acccaaactg gtagcgggct attataacga ctttcagatc tataaggctc tggaggcggt
     1981 atccagttgt gttcggcaaa ctaatggctt cgtccaaagg cacgcaccat ggaaattgac
     2041 ctgggagagc cctgcggatg ctccctggct gggtaccgtg cttcacgtgg ccttggagtg
     2101 cttgcgagtg tttggaactt tgcttcagcc tgttacacca aacttagctg ataagttgct
     2161 gtcaagactg ggagtctcta ccacagagag aagccttgga gagctctact tcctacctcg
     2221 attctatgga cacccatgcc cctttgaagg gagaaaattg ggacctgaca ctgggctttt
     2281 gtttccgaga ctggaccaat ccaggactcg gctagtgaaa gcccatagga cctaggaact
     2341 cagcccttat ggctgatggt aaaagatcaa atgtattctt tttaaatttt tcagtaaaat
     2401 cgtgtataaa gtgtatcaaa tgagcacatg tgtgtcctca agaaccgagt gattcaggtt
     2461 cttaacccgg ttttttcact tctcagtgct gttaaccact gttcttgttt gccaatgtct
     2521 ccaagagaag gatggttgag agcaggacca agatactgac actgttcctt cttcttgcac
     2581 cttctcccaa cccagggtcc agactacctc agggcttctg atcttaaggc tgacttatca
     2641 cagtcccttc ttgaactgaa actagggttg gaagctgctt ttgttaaaca cagagtttac
     2701 taggatagga ctttaggagc cggttcctag actagatgat ttttgcccat gttcattttc
     2761 taagttgcct cagttatgat ttgtcagccc agcagttgtg ctttgtaata atacactcca
     2821 tccagtagat ggctctgctc tcacacatcc agctccttca gagtgtcctt tcagaagata
     2881 gttattttca gctgtcttaa ttcacagaat tttagaattg tactgttctt cttaaagaat
     2941 agctttggaa ccactgctat tttaacaaaa agacactaga attctaattt taaaactact
     3001 aaaatgacaa gtacaatagg ttaataagta agtatggcag gtttgttata tgataaaact
     3061 ataaagctct tgaggtacac tgtgtattac agataaagtt tagtaatggt tacatgttca
     3121 tctataaagc ctgccaaagg gttgtagtgt ctttatatta ttatccacat acataattta
     3181 cctcgtgatt atttttggtc actcaggata catagtatag gaatgatata ttgtaattag
     3241 taaatatatg tcagtaattt ttgttggtta cttctctttg agacaagcgt tcactgtgta
     3301 gtttcttatt ctcctgcctc tgtctttcag gtgttggatt atgggatgtg ccaccatgcc
     3361 tgtcttttaa cttgttatta aagtgatttt aagtaccctc tt
//
