LOCUS       NM_001100601            1659 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus membrane associated ring-CH-type finger 9
            (Marchf9), mRNA.
ACCESSION   NM_001100601
VERSION     NM_001100601.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Morokuma Y, Nakamura N, Kato A, Notoya M, Yamamoto Y, Sakai Y,
            Fukuda H, Yamashina S, Hirata Y and Hirose S.
  TITLE     MARCH-XI, a novel transmembrane ubiquitin ligase implicated in
            ubiquitin-dependent protein sorting in developing spermatids
  JOURNAL   J Biol Chem 282 (34), 24806-24815 (2007)
   PUBMED   17604280
REFERENCE   2  (bases 1 to 1659)
  AUTHORS   Bartee E, Mansouri M, Hovey Nerenberg BT, Gouveia K and Fruh K.
  TITLE     Downregulation of major histocompatibility complex class I by human
            ubiquitin ligases related to viral immune evasion proteins
  JOURNAL   J Virol 78 (3), 1109-1120 (2004)
   PUBMED   14722266
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB048842.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB048842.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q22"
     gene            1..1659
                     /gene="Marchf9"
                     /gene_synonym="March-IX; March9; Rnf179"
                     /note="membrane associated ring-CH-type finger 9"
                     /db_xref="GeneID:679272"
                     /db_xref="RGD:1590688"
     exon            1..414
                     /gene="Marchf9"
                     /gene_synonym="March-IX; March9; Rnf179"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..1098
                     /gene="Marchf9"
                     /gene_synonym="March-IX; March9; Rnf179"
                     /EC_number="2.3.2.27"
                     /note="membrane-associated ring finger 9;
                     membrane-associated RING-CH protein IX; E3
                     ubiquitin-protein ligase MARCH9; membrane-associated ring
                     finger (C3HC4) 9"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MARCHF9"
                     /protein_id="NP_001094071.1"
                     /db_xref="GeneID:679272"
                     /db_xref="RGD:1590688"
                     /translation="MLKSPLRMFLNELKLLVLTGGGRPRAEPQPRGGGGGGCGWAPFA
                     GCSARDGDGDEEEYYGSEPRARGLAGDKEPRAGPPPPPAPPPPPPGALDALSLSSSLD
                     SGLRTPQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQ
                     VLAISTKNPLQWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDL
                     LFQICYGMYGFMDVVCIGLIVHEGSSVYRIFKRWQAVNQQWKVLNYDKTKDVGGDAGG
                     GAAGKPGPRTSRTSPPAGAPSRPPAAQRMRTLLPQRCDYTILHLLGQLRPPDARSSSH
                     SGREVVMRVTTV"
     exon            415..570
                     /gene="Marchf9"
                     /gene_synonym="March-IX; March9; Rnf179"
                     /inference="alignment:Splign:2.1.0"
     exon            571..763
                     /gene="Marchf9"
                     /gene_synonym="March-IX; March9; Rnf179"
                     /inference="alignment:Splign:2.1.0"
     exon            764..1617
                     /gene="Marchf9"
                     /gene_synonym="March-IX; March9; Rnf179"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccccgccgc tcgggagccc ccctagctcg ccgccccccg cccccggcgc ccggacgatg
       61 ctcaagtctc cgctccgcat gttcctgaac gagctgaagc tgctggtgct gacgggcggg
      121 gggcggcccc gggccgagcc gcagccccgg gggggcgggg gaggcggctg cggctgggcg
      181 cccttcgctg gctgctccgc ccgggacggt gacggcgacg aagaggagta ctacgggtcg
      241 gaaccacggg cccggggcct ggccggcgac aaggaaccgc gggccggacc cccgccgccg
      301 cccgcgccgc cgccgccgcc cccaggcgcg ctggacgccc tgtcgctcag cagcagcttg
      361 gacagtgggc tccgaacccc ccagtgcagg atctgcttcc aaggcccgga gcagggggag
      421 ctcctgagcc cttgccgctg tgacggctca gtgcgttgta cacaccaacc ctgcctaatc
      481 cgctggatca gtgagagggg ctcctggagc tgtgagcttt gctatttcaa gtaccaggtc
      541 ctggcgatca gcaccaagaa tccactgcag tggcaggcca tctccttgac tgtcatcgag
      601 aaggtccaga ttgctgctat tgttctgggc tcactgttcc tggtcgccag catctcctgg
      661 ctcatctggt cctcactcag cccttcggcc aagtggcaac gccaggatct gctcttccag
      721 atctgctatg gcatgtatgg cttcatggac gttgtctgca taggtctcat cgtccatgaa
      781 gggtcttctg tttaccgcat cttcaagcgc tggcaggccg tgaaccagca gtggaaggtc
      841 ctgaactatg acaagaccaa ggacgtggga ggagacgcag ggggaggggc agcagggaag
      901 ccaggcccca ggacctcaag gaccagcccc cctgctgggg cccccagccg acccccagct
      961 gcccagcgca tgcggacgct cttgcctcag cgctgtgatt acacaatcct gcatctcctt
     1021 ggacagctac ggccaccaga tgcccgttcc agctctcatt ctggtcgaga ggttgtcatg
     1081 agggtcacta cagtttgacc tagactccag gagcagggat cttaagtcag tgcatcagcc
     1141 agaggtgagc tctcctggct gctggaggta cgacctagac aacgtgtttg gggcactgtg
     1201 accccaccat ggaggatctc tgtggacagc cgcaggcttg gagacattgt ctggcctcta
     1261 ctgcctacag ggtagagacc ccggaggaca ttccagttcc cagtgacacc gcctcatatt
     1321 catcttgagg atggccagca ggcaagcggg gagaacaacg tttcttcctg gagagaacca
     1381 tctttacctc agctttaggg cctccagtcc cctggctcca ccatggtgac ttggtaaagg
     1441 gagaccaatg ccagagaaga ggggctgtag acccccattc cccaccccat ggccacaggg
     1501 catctggcaa taagactagt aaacattgac ctcccgttcc ctgcatgagg gcggggactt
     1561 ccccctgccc caccccccac tgcatggggg aagggcataa agaatcattt atatgcaaaa
     1621 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
