LOCUS       XM_039104833            3409 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus membrane associated ring-CH-type
            finger 7 (Marchf7), transcript variant X7, mRNA.
ACCESSION   XM_039104833
VERSION     XM_039104833.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104833.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3409
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3409
                     /gene="Marchf7"
                     /gene_synonym="Axot; March7"
                     /note="membrane associated ring-CH-type finger 7; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 62 ESTs, 4 long SRA reads, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:311059"
                     /db_xref="RGD:1308993"
     CDS             16..2136
                     /gene="Marchf7"
                     /gene_synonym="Axot; March7"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MARCHF7 isoform X3"
                     /protein_id="XP_038960761.1"
                     /db_xref="GeneID:311059"
                     /db_xref="RGD:1308993"
                     /translation="MALLIQTRARETLRMESKPSRIPRRISVQPSGSLSARMVSGNRG
                     TSLNDSYHSRDSSFRLDSEYQSASASASASPYQSTWYSESEITQGARSRSQNQQRDHD
                     SKRPKLSCTNCTSTSAGRNIGSGLNTLSDSSWRPGQVPRSSSMVLGSFGTDLMRERRD
                     LERRRDSSISSLMDYSHRSGDFTAPAYVQERVPSSYSQGARPKENAANTLQLNSSTNH
                     QLPSEHQTVPSSRDSSRSSFRSHFSPRQSESFRNSSHPAFSYLSSRNETPTISSSERA
                     GSSQRPFQESSDNEGRRTTRRLLSRIASSMSSTFFSRRSSQDSLNTRSLSSENYISPR
                     TLTSQSRNNGASSSEVNDGRASEASQGFRFLRRRWGLSSLSQNHSSEPDAENFNQESE
                     GRNTGPWLSSSLRNRCTPLFSRRRREGRDESSRISPSDVPPRSHLFRRESNEVVHLEA
                     QGDSLGAAASRPQASGASGNASASGSTPDLPQGGRNTGIAGILPGSLFRFAVPPALGS
                     NLTDNVTITVDIIPSGWSSADGKSEKAKSAPSRDPEKLQKIKESLLLEDSDEEEEGDL
                     CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKE
                     KLQLNLEDFDIHELHRAHANEQAEYEFISSGLYLVVLLHLCEQSFSDMMGNTIEPSTR
                     VRFINLARTLQAHMEDLETSEDEF"
ORIGIN      
        1 tggaggcaaa ataggatggc tcttctaatt cagacccggg cgagagaaac cttaagaatg
       61 gagtctaaac cttccaggat tccaagaaga atttctgttc aaccctctgg ctctttaagt
      121 gctaggatgg tatctggaaa ccgaggaacc agtttaaatg attcctatca ttctagagac
      181 tcttccttta gactggattc tgaatatcag tctgcctcag cgtcagcatc tgcatcacca
      241 tatcagtcta cttggtacag tgagtctgag ataactcagg gagcacggtc acggtcacaa
      301 aaccagcaaa gggatcatga ttcaaaaaga cctaaacttt cttgtacaaa ctgtacgtct
      361 acctcagctg ggagaaatat tggaagtggt ttaaatacac tgtcagattc ttcttggagg
      421 cctggtcaag ttccgagatc ttcttcaatg gtccttggtt catttggaac agacttgatg
      481 agagagagga gagatctgga gaggagaagg gactcctcca ttagcagtct tatggactat
      541 agtcaccgga gtggggattt cacagctcca gcatatgttc aagaaagagt tccttcttca
      601 tattcacagg gagcaagacc aaaagagaat gccgcgaaca ctttacagtt gaattcatcc
      661 accaatcacc aactgccttc tgagcatcag acagtaccaa gttctaggga ctctagtaga
      721 agttctttca gatcccattt ttctccaaga caatcagaat cttttcgaaa cagttcacat
      781 cctgcatttt catatctttc aagtagaaat gaaactccaa ctataagcag ttcagaaagg
      841 gctggctcgt ctcagagacc atttcaagaa tcttctgaca atgaaggtag gcgtacaact
      901 aggagattgc tgtcacggat agcttctagc atgtcatcta ccttcttttc acgaagatct
      961 agtcaagatt ccttaaatac aaggtcactg agttccgaaa attatatttc tccaagaacc
     1021 ctgacttcac agtctcggaa taatggagca tcatcttctg aagttaatga tggcagggcg
     1081 tctgaagcgt ctcagggatt taggtttctt aggcgaagat ggggtttgtc gtctcttagc
     1141 cagaatcata gctctgaacc agatgcagaa aactttaacc aagaatcaga aggtagaaat
     1201 acaggaccat ggttgtcttc ctcacttaga aatagatgca cacctttgtt ctctagaagg
     1261 aggcgagagg gaagagatga gtcttcaaga atatctccat cagatgtacc tcctagatct
     1321 catcttttca gaagagaatc aaatgaagta gttcaccttg aagcacaggg ggactccctt
     1381 ggggcagctg ccagcagacc acaagcatcc ggagcatcag gcaatgcttc tgcaagtgga
     1441 tccacaccag atttgccaca gggtggaaga aatacaggaa tagcagggat ccttcctggc
     1501 tccttattcc ggtttgcagt tccgccagca cttggcagta acctgactga caatgtcacg
     1561 attaccgtag atattattcc ttcaggttgg agttcagctg atgggaaaag tgaaaaagct
     1621 aaaagtgcac cttcaagaga cccagaaaaa cttcagaaaa tcaaagaaag cctcctctta
     1681 gaggactctg atgaagaaga agaaggggac ttatgtagaa tttgccagat ggcagcagcg
     1741 tcatcatcta atttattgat agagccatgc aaatgcactg ggagtctgca gtatgtccat
     1801 caagagtgta tgaagaagtg gttacaggcc aaaattaatt ctggttcttc attagaggct
     1861 gtaaccacct gtgaactctg taaagagaag ttgcaactta acctggagga ttttgatatt
     1921 catgaactac atagagctca tgcaaatgaa caagctgagt atgagtttat cagctctggt
     1981 ctctacctag ttgtcttact gcacttgtgt gaacaaagct tttctgatat gatgggaaat
     2041 acaatcgaac caagcacgcg cgtccgattt attaaccttg caagaactct tcaggcacat
     2101 atggaagatc tcgaaacttc agaggatgag ttctgaagat gatggagacc acaacagaag
     2161 gcttgatatt gcttcacttc atttaagaca aatggattat ctgtgaacat gtttgttgaa
     2221 actggcaatt aagtatgaat aatttcatgg ggtaatgcct cgtagattaa ttgactatac
     2281 ataaaatgaa tatatatata tacatgtata agtgtaaata tatattcatt ctcacgtact
     2341 gctgaactga aattcttgag ctggaccttt taacactggc cagcagatct catgtttata
     2401 atatgtaatc aaaaacattt ttcttgcggt gagtgggaaa gcattaccct tgttttaaat
     2461 atctaagcaa tgctcatcaa cttttttctg tgttacgatt actgtagtca tatttatgga
     2521 aaaaaatgtt tgtgtattag tctcttgcta gtgaaaaaaa gtcagataaa atgtactttt
     2581 gaaataaatg ccagtggcac ctaattagtt ttcctcttta aatgccttaa gttacagcca
     2641 cattttgata atcatttact tccagtgttt aaaatttttt taaaagaatg ggaagttcaa
     2701 agagcattat tatgttaggt ttccaaattt aatttgaatt ctaaatccac ttagcaataa
     2761 aaccctaatt tttaagaaaa aaagtgtgta aaggatgcag taatgatgga gaacttttgt
     2821 attgatttgc aaagacacag attatattta gcaggccgcg tgtagatgtt cctttcagga
     2881 atagtacagc tgtaaattat atcaggattg tcagtcaaat gatacttggt taaaaattac
     2941 tgaaaatctc aagttaacaa atattttttt aaaagcccac attcaaagtt taaaacactg
     3001 gttttcaatg tgtttttagt gttgtcactt ctttatagag aaatataata taaataacct
     3061 atttggatcc tggtcatttt tagctgttcc ttgataattc tgagcattta tttgatgatt
     3121 gttaatattt ttcactacct ttgcaaaaca gataaattac ttattcaaca ttaatgagtt
     3181 tgcactatgg tcatgagctg tgtaaacttg cataatgatt tccactgtca acacccttag
     3241 gatacacatt tacacttgcg ggtggtttca gattagtctc atgctgtagc aacagcaact
     3301 ttcaaaaact aaatagaaac catgtacatt gtcaatgtga atgaacaatt tagtttgttg
     3361 gtgttaatgt aaaaccttgg cttgaaataa agtgatactg attgatgta
//
