LOCUS       XM_008760367            2687 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus membrane associated ring-CH-type
            finger 5 (Marchf5), transcript variant X1, mRNA.
ACCESSION   XM_008760367
VERSION     XM_008760367.3
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008760367.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2687
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2687
                     /gene="Marchf5"
                     /gene_synonym="March5; Rnf153"
                     /note="membrane associated ring-CH-type finger 5; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 20 ESTs, 251 long SRA reads, 2 Proteins"
                     /db_xref="GeneID:294079"
                     /db_xref="RGD:1305617"
     CDS             101..982
                     /gene="Marchf5"
                     /gene_synonym="March5; Rnf153"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MARCHF5 isoform X1"
                     /protein_id="XP_008758589.1"
                     /db_xref="GeneID:294079"
                     /db_xref="RGD:1305617"
                     /translation="MPDQALQQMLDRSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQ
                     ACLQRWVDEKQRGNSTARVACPQCNAEYLIVFPKLGPVVYVLDLADRLISKACPFAAA
                     GIMVGSIYWTAVTYGAVTVMQVHHSTLFSDTTFDVKVVGHKEGLDVMERADPLFLLIG
                     LPTIPVMLILGKMIRWEDYVLRLWRKYSNKLQILNSIFPGIGCPVPRIPAEANPLADH
                     VSATRILCGALVFPTIATIVGKLMFSSVNSNLQRTILGGIAFVAIKGAFKVYFKQQQY
                     LRQAHRKILNYPEQEEA"
     polyA_site      2687
                     /gene="Marchf5"
                     /gene_synonym="March5; Rnf153"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gggactgagg cctactccgc cgcctctcag tgctattgtc ccggggcctg gccctgagcg
       61 gagctgcggg cgagggccga gctcgccggc tccgcagaag atgccggacc aagcccttca
      121 acagatgctg gacagaagtt gctgggtgtg ttttgccacc gatgaagacg atagaacagc
      181 tgaatgggtg agaccatgca ggtgcagagg atctactaag tgggttcacc aggcttgtct
      241 acaacgctgg gtagatgaga agcaacgagg aaacagcaca gccagagtgg cctgccctca
      301 gtgcaatgcc gagtacttaa tagtgtttcc aaagctgggt ccagttgttt atgtcttgga
      361 tcttgcagat agactgatct caaaagcttg cccctttgct gcagcaggaa taatggttgg
      421 atctatctac tggacagctg tgacttatgg agcagtgaca gtgatgcagg ttcaccattc
      481 tactctattc agtgacacta cttttgatgt gaaggttgta ggccataaag aagggctgga
      541 tgttatggag cgagctgacc ctttatttct tttgattgga cttcctacta ttcctgtcat
      601 gctgatacta ggcaaaatga ttcgctggga ggactatgtg cttagactat ggcgcaaata
      661 ctcaaataaa ctacaaattt tgaacagtat atttccaggg attggttgtc ctgttcctcg
      721 aattccagct gaagctaatc ctttagcaga tcatgtctct gctactagaa ttttgtgtgg
      781 agcccttgtc tttcctacta ttgcgacaat agttggtaaa ctgatgttca gtagcgttaa
      841 ctcaaattta cagaggacaa tcttgggcgg aattgctttt gttgccataa aaggagcatt
      901 taaggtttac ttcaaacagc agcaatattt acgtcaggca caccgcaaaa tcctaaatta
      961 tccagagcaa gaagaagcat aaaactgact tctggttgtt ctgaggcctc tcatcctgac
     1021 gagtctgttg tgttctgatt ccatcactaa tgcgctagtg gagactggtg ataagctact
     1081 gctcctatat tctaagagat acaataaagc acgcagggcg ggggaaagcc tctcagtaat
     1141 cacggaacct aaggacatga gtcagctctg taatttgtat gtactacttt tacggcagtc
     1201 ggctaaacca ttattttagc atggtaaatc tgggtttgtt catatttttc cagacaagaa
     1261 tgtaaagata aaactgtaca aatattaaaa gtggacatgt tgtttcattc tgatgcctct
     1321 tttgtatata ctcatgctca gtgttttctt aggaacagca actcgatgaa ggaactgtga
     1381 ggactttctc actggtgtaa tttgactaca tgctacacag gagcctctgt taacatgagg
     1441 aaatgtaaac tagttctgaa taaataacaa gcccaaaaat gtctgtcagc attgaaatga
     1501 ttatctgaac aaaagagatt ttgttgcctt ttccttaacc cacgtgacat ctcagatgtg
     1561 tagggtcagt ttccagggct tccagatcac tttttcacta ttaaatttat ttatgcaata
     1621 ttgacatctc atagttcata gtgtgatttt gactcatgta gtcatgtgtg tgtgtctgtg
     1681 tgtgtctccg tgggggttag ggagggtcag aaagaaggta ggagggaggg aagcagagga
     1741 tagtgatagg gaaatgaggt ggaaggccct tgaatcactt agtgtgtgtt ttaatttgta
     1801 tttctagaaa ttagaactgc cagttcacag tttaaccaga gaacaacttg caaaaatata
     1861 ataaaattat tgggtttttg atgattaatt attcagataa ttgtttgtta attgactccc
     1921 atttacctag ccactgtgca gggtgctatg ggatgtagtg gtgaacggca gacttgctct
     1981 tagagcttgc agtctaatcc taatagaaca agcagtgatt gaaccaaagt aggtgttgat
     2041 ggtgctgtgc gtagcagtcg gtatcagagg taattatgaa aacaagtctt taaggagtat
     2101 tgatcaaggc aattgatttc cactttactt gtttatagga tagccaatac taatgttttt
     2161 agggtatttt gtttttgaat cagggtctct aacataggct aacctcaaac ttctatgtct
     2221 ctgaagatga ctttgaactc gtgatccagt tacaggtgag caccgtaacg cctgcttttt
     2281 ttaacttgat gctgtggatt gaacccaggg ccttatgcac gataggtcta cactaccaat
     2341 tgaactacat caccagccct ccttttagat tttaattgtc gtattaaggg agcaatctcc
     2401 ttaatagtca ttgtttaact agttttatat tcattgttca aaagtaatta tttaggtcat
     2461 gttcgatagt gaccatataa tgttcagcaa tctgaatgtt cttttcactt atttttattg
     2521 attaaaatga aaatgtttaa agttcgaaaa ataatgctgt tcacagtata tgatgcatga
     2581 ataatgttcc ccttactgag aaatggatac ttctctttag aagtgtaaca aatatagatt
     2641 gagctgtatt aggttgtaaa taataaatat tttagtaaag actggta
//
