LOCUS       XM_001074008            2832 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus membrane associated ring-CH-type
            finger 4 (Marchf4), mRNA.
ACCESSION   XM_001074008
VERSION     XM_001074008.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 3, 2024 this sequence was replaced by
            NM_001427784.1.
            
            On Jan 21, 2021 this sequence version replaced XM_001074008.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2832
                     /gene="Marchf4"
                     /note="membrane associated ring-CH-type finger 4; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 7 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 116
                     samples with support for all annotated introns"
                     /db_xref="GeneID:367295"
                     /db_xref="RGD:1590797"
     CDS             35..1264
                     /gene="Marchf4"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MARCHF4"
                     /protein_id="XP_001074008.1"
                     /db_xref="GeneID:367295"
                     /db_xref="RGD:1590797"
                     /translation="MLMPLGGLLWWCCCCCCGWYCCGLCTPAPQMLRHQGLLKCRCRM
                     LFNDLKVFLLRRPPPAPLPMHGDPQLPGVAANNNTLPALGAGGWAGWRGPREAVGRET
                     PPLPPPPPLPPSVEDDWDGPAIGPPASLLSSASSDEFCKEKTEDCYSLGSLDSGMRTP
                     LCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAIST
                     KNPLQWQAISLTVIEKVQIAAAILGSLFLIASISWLIWSTFSPSAKWQRQDLLFQICY
                     GMYGFMDVVCIGLIIHEGPSVYRIFKRWQAVNQQWKVLNYDKTKDLEDQKSGGRTNLQ
                     TSSSAQASMPSTEEEAASPPAREEGPPRAASHPSGPVSQHHCAYTILHILSHLRPHDQ
                     RSTQGSSRELVMRVTTV"
ORIGIN      
        1 ctgccccctt tccagtcctc tgcttcccta tcacatgctc atgcccctgg gtgggctgct
       61 gtggtggtgc tgctgctgct gctgtggctg gtactgctgt ggactgtgca ccccagctcc
      121 ccagatgttg cgccaccagg gtctcctcaa gtgccgctgc cgaatgctct tcaatgacct
      181 gaaggttttc ctactgaggc gcccccctcc agcgcccctg cccatgcacg gtgaccccca
      241 gctccctggt gtggcggcca acaacaacac ccttccggct ctgggtgccg gaggctgggc
      301 aggctggagg ggcccccgag aagcggtggg cagggagacc cctcctctgc cacctccacc
      361 acctttgcct ccttctgtgg aagatgactg ggatggtcca gccatagggc caccggcctc
      421 cctgctcagc agcgcttcct ctgacgaatt ctgtaaggag aaaactgagg actgctactc
      481 ccttgggagc ttggacagtg gcatgaggac tcccctctgc cgcatctgtt tccagggacc
      541 agagcaggga gagctgctaa gcccatgccg ctgtgatggt tcagtcaaat gcacacacca
      601 gccatgtctc atcaaatgga tcagtgagag gggctgctgg agttgtgagc tgtgctacta
      661 taagtaccat gtcatcgcca taagcacaaa gaatcctcta cagtggcagg ccatatccct
      721 gacagtcatc gagaaggttc agattgcagc cgccatcctg ggttctctct tcctcatcgc
      781 cagtatctct tggctcatct ggtcgacctt cagtccctca gcaaaatggc aacgccaaga
      841 cctcctcttc cagatctgct atgggatgta tggcttcatg gacgtggtgt gcataggcct
      901 catcatccat gaagggccct ccgtataccg catctttaaa cgctggcagg ctgtaaacca
      961 gcagtggaaa gtgctgaact atgacaagac aaaagactta gaggatcaaa aatcaggagg
     1021 caggacaaac ctacagactt cctcatctgc ccaagccagc atgccctcca cggaagagga
     1081 ggcagccagc ccgcctgccc gtgaagaagg ccccccgagg gctgccagcc acccctcagg
     1141 ccctgtgtcc caacaccact gtgcttacac catcctacac atcctgagtc acttgagacc
     1201 acatgaccag cggagcaccc agggcagcag ccgagagctc gtcatgagag tcaccacagt
     1261 gtgaaaggag gcctggaggg aaagttgaga ccacacacac cccaggaaag agtctgggcc
     1321 aggaggggcc cagggaacag gaatgggagg caagaatcca gcagtgggtg ttgggcctca
     1381 aggggagctg tgggctgtgg ggagactgcc tgagagagag tgctgttgtt ttcatagcaa
     1441 gggaaaacca acagaaactt cacaacaatg ggtgggatga atggaatctg ccctaagaaa
     1501 acaacccctt ccagagagcc acaagtagca agacacccag aaaggggtgg gcagaaaatg
     1561 gtggctggta cctgaggtac ctgctgtgcc tatgggtgtt aagggcagca aaaagagaaa
     1621 gcaatggcca cctagggaag agcttttgta atttgcatct ctctttcagc cttgggttta
     1681 ttcctccctg ggtgctgctt cctaatactg ggtaccagac acatacagag agagagagag
     1741 agagagagag agagagagag agagagagag agagagagag agagagagag agagagagag
     1801 agagactggg accttgtagg ctggtggccc taccatgttt gttgggggcc tctacactct
     1861 gcaaaattcc agtgactcag atggctttac caatccctag gagatggttc gggaagggag
     1921 ttgttggtat gcctggccag agagatgggg ctgggtcccc cagaaagaac tttcctaggt
     1981 gtaactacaa gtgtcatgtg aactcaaaga aggctgaggt ttagagatgg taatctttct
     2041 gtttccttgt ttattttatg gtgatttggc tcaaagatgt ttacaggatg ggggactcac
     2101 acacatgcat gtgggcgtgg agggaggcac agacttctcg tgagtatctc aagcacactt
     2161 ctgctgctgt gccgtcagcc ttcaaagctg cgaggccaag gatgattttt acccactgct
     2221 caactccatc cataaccagg ataacacagt gccatgttct tttggccttg gcattctcac
     2281 agggcaggca gatacacata cacacatgta tgtgcgcacg cacgcacgca tgtgtgagcg
     2341 cacacctgca aaaacacaca cacagacaca cagacacaca cacacacaca cacacacaca
     2401 cgtacacaca caccacatgc acctgggtct gctgcagtgt ggggtgacac tggcctgtct
     2461 atctcaagga aggcatgaac atctaagtat tccttgctgc ttggtaccag tctcctccct
     2521 aaagaggcga tttgcctagt gctctgggct atgtactcct ggtcctcctt gtgcaaccag
     2581 acacaccaag gagccaatca gggaggacac tgtcttagga gcccacctgt gtgttccaag
     2641 aacctgccag ggaagaccac tgggtggtca cctgcagagt ttcttactgt cattgcacaa
     2701 tggacatgtc atccttgggt attaaatgga cactgtcaag tactttttta aactagtttt
     2761 tagggttttt taaaaactct ctgttgtttg taatattctc ttaaaagctt ggaaataaaa
     2821 tttctttccc ta
//
