LOCUS       NM_001101828            1572 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus membrane associated ring-CH-type finger 11
            (Marchf11), mRNA.
ACCESSION   NM_001101828 XM_001064047 XM_574883
VERSION     NM_001101828.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Morokuma,Y., Nakamura,N., Kato,A., Notoya,M., Yamamoto,Y.,
            Sakai,Y., Fukuda,H., Yamashina,S., Hirata,Y. and Hirose,S.
  TITLE     MARCH-XI, a novel transmembrane ubiquitin ligase implicated in
            ubiquitin-dependent protein sorting in developing spermatids
  JOURNAL   J Biol Chem 282 (34), 24806-24815 (2007)
   PUBMED   17604280
  REMARK    GeneRIF: MARCH-XI acts as a ubiquitin ligase with a role in
            ubiquitin-mediated protein sorting in the TGN-MVB transport
            pathway, which may be involved in mammalian spermiogenesis
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CK596283.1, AB048841.1 and AW528861.1.
            
            On or before Dec 7, 2007 this sequence version replaced
            XM_001064047.1, XM_574883.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB048841.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132266
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-623               CK596283.1         1-623
            624-1558            AB048841.1         619-1553
            1559-1572           AW528861.1         1-14                c
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q22"
     gene            1..1572
                     /gene="Marchf11"
                     /gene_synonym="MARCH-XI; March11; RGD1559945"
                     /note="membrane associated ring-CH-type finger 11"
                     /db_xref="GeneID:499558"
                     /db_xref="RGD:1559945"
     exon            1..729
                     /gene="Marchf11"
                     /gene_synonym="MARCH-XI; March11; RGD1559945"
                     /inference="alignment:Splign:2.1.0"
     CDS             205..1401
                     /gene="Marchf11"
                     /gene_synonym="MARCH-XI; March11; RGD1559945"
                     /EC_number="2.3.2.27"
                     /note="E3 ubiquitin-protein ligase MARCH11;
                     membrane-associated RING finger protein 11;
                     membrane-associated RING-CH protein XI;
                     membrane-associated ring finger (C3HC4) 11; RING-type E3
                     ubiquitin transferase MARCH11; RING-type E3 ubiquitin
                     transferase MARCHF11"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MARCHF11"
                     /protein_id="NP_001095298.1"
                     /db_xref="GeneID:499558"
                     /db_xref="RGD:1559945"
                     /translation="MSDEGSKRGSRADSLEAEPPLPPPPPPPPPGESSLVPTSPRYRP
                     PLPAPLERIVGSGEPPVELAPRRKGEPLPPLPPSRLPGDQEVSAAGDSCEGPRRLPEV
                     KLPEAAAGKGSPAEPEAGACGEGERRGTGDQPETRSVCSSRSSSSGGSGDQRSGHQHQ
                     HHQPICKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVT
                     AIKMKQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILF
                     QICYGMYGFMDLVCIGLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDIEESSRGES
                     STSRTLWLPLSALRNRNLVHPTQLTSPRFQCGYVLLHLFNRMRAHEDVSEDNGSGEVV
                     MRVTSV"
     exon            730..885
                     /gene="Marchf11"
                     /gene_synonym="MARCH-XI; March11; RGD1559945"
                     /inference="alignment:Splign:2.1.0"
     exon            886..1078
                     /gene="Marchf11"
                     /gene_synonym="MARCH-XI; March11; RGD1559945"
                     /inference="alignment:Splign:2.1.0"
     exon            1079..1564
                     /gene="Marchf11"
                     /gene_synonym="MARCH-XI; March11; RGD1559945"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcggctccg ctgaacagcc gcctctgccg ccgccgcgcc ggtcctccgc gtcctctcct
       61 ggtcccgccc tcctagtccc tgcgtcccgg ttccccttcc cgccctcctc ccacctccct
      121 ctccagcctc ccttagcgct cctctggctg cagtccgcgc ccggcccgcc accgggcggg
      181 caggaggacg gcggcgactc caccatgagc gacgagggca gcaaacgggg tagccgggcg
      241 gacagcctcg aagctgagcc acctctgccc ccgccgcccc cacccccgcc tccgggagag
      301 tcctccctgg tccccacctc cccacgctac cggccgccgc tacccgcgcc tctggagcgc
      361 atcgtagggt cgggcgagcc gccggtagaa ctggccccgc ggcgcaaggg tgagccgctg
      421 ccaccgctgc cgccgtctcg gttgcccggc gaccaggagg tgtcagcggc gggcgactcc
      481 tgcgaaggtc ctagacgcct tccggaggta aagctcccgg aggctgcggc ggggaaaggc
      541 agcccggcgg agcccgaggc cggcgcgtgc ggggagggcg agcggcgagg caccggagac
      601 cagcctgaga cacgctccgt atgtagcagc cgcagcagca gtagtggcgg cagtggcgac
      661 cagcgctcgg gacatcagca ccagcaccat cagcccattt gcaagatctg cttccagggc
      721 gcggagcagg gtgagttgtt aaatccttgc cgatgtgatg gttctgttcg gtacacacat
      781 cagctgtgtc ttctaaagtg gatcagcgag aggggctcct ggacctgcga actgtgctgt
      841 tatagatacc acgtcacagc cattaaaatg aagcaacctt gccagtggca gagcatttct
      901 ataacactgg ttgagaaagt tcagatgatc gctgtaatcc taggatccct gttcttaata
      961 gcgagtgtga cttggctcct ctggtcagcc ttcagcccct atgcagtgtg gcagaggaag
     1021 gacatccttt tccaaatctg ctatggaatg tatggtttta tggatctagt gtgcataggc
     1081 ctcattgtcc atgaaggagc tgcagtttac agagtgttta agcgatggcg agctgttaac
     1141 ttgcactggg atgtattaaa ttatgacaaa gccacagaca ttgaagaaag cagccgagga
     1201 gagtcatcca caagtaggac tttgtggtta ccattgtcag ctctgaggaa caggaacttg
     1261 gtccacccaa cgcaactaac ctcaccacgg tttcagtgtg gctatgtgct attacatcta
     1321 ttcaatcgga tgagggccca tgaagatgtt tcggaagata atggctctgg tgaggtagtg
     1381 atgagagtga cgtctgtgtg acagatgtac atggcagcag agtgtggaac cctgcacatt
     1441 tcggaatgta attgcaatga atggcaaaac catagcactt ctaattgtac atccatgaac
     1501 tttttaaaat ctatgctttt tatatgaaca tttgaattgc aaatacattt ttctgaaaaa
     1561 aaaaaaaaaa aa
//
