LOCUS       XM_039085764            5904 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus microtubule-associated protein tau
            (Mapt), transcript variant X33, mRNA.
ACCESSION   XM_039085764
VERSION     XM_039085764.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039085764.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5904
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5904
                     /gene="Mapt"
                     /gene_synonym="MAPT_0N4R; Mtapt; pTau; RNPTAU; Tau"
                     /note="microtubule-associated protein tau; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 79 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     66 samples with support for all annotated introns"
                     /db_xref="GeneID:29477"
                     /db_xref="RGD:69329"
     CDS             149..2029
                     /gene="Mapt"
                     /gene_synonym="MAPT_0N4R; Mtapt; pTau; RNPTAU; Tau"
                     /codon_start=1
                     /product="microtubule-associated protein tau isoform X28"
                     /protein_id="XP_038941692.1"
                     /db_xref="GeneID:29477"
                     /db_xref="RGD:69329"
                     /translation="MAEPRQEFDTMEDQAGDYTMLQDQEGDMDHGLKESPPQPPADDG
                     SEEPGSETSDAKSTPTAEAEEAGIGDTPNMEDQAAGHVTQEPQKVEIFSQSLLVEPGR
                     REGQAPDSGISDWTHQQVPSMSGAPLPPQGLREATHQPLGTRPEDVERSHPASELLWQ
                     ESPQKEAWGKDRLGSEEEVDEDITMDESSQESPPSQASLAPGTATPQARSVSASGVSG
                     ETTSIPGFPAEGSIPLPADFFSKVSAETQASPPEGPGTGPSEEGHEAAPEFTFHVEIK
                     ASAPKEQDLEGATVVGAPAEEQKARGPSVGKGTKEASLLEPTDKQPAAGLPGRPVSRV
                     PQLKARVAGVSKDRTGNDEKKAKGADGKTGAKIATPRGAATPGQKGTSNATRIPAKTT
                     PSPKTPPGSGEPPKSGERSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPK
                     SPSASKSRLQTAPVPMPDLKNVRSKIGSTENLKHQPGGGKVQIVYKPVDLSKVTSKCG
                     SLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFREN
                     AKAKTDHGAEIVYKSPVVSGDTSPRHLSNVSSTGSIDMVDSPQLATLADEVSASLAKQ
                     GL"
ORIGIN      
        1 cacagtctcc gccacccacc agctccagca ccagcagcag cgccggcgcc accgcccacc
       61 ttctgctgtc gccgccgcca caaccacctt cccctccgct gtcctcttct gtcctcgcct
      121 cctgtcgatt atcaggcttt gaagcagcat ggctgaaccc cgccaggagt ttgacacaat
      181 ggaagaccag gccggagatt acactatgct ccaagaccaa gaaggagaca tggaccatgg
      241 cttaaaagag tctcccccac agcccccagc cgatgatgga tcagaagaac cagggtcgga
      301 gacctctgat gctaagagca ctccaactgc tgaagctgaa gaagcaggca tcggagacac
      361 cccgaacatg gaggaccaag ctgctgggca tgtgactcaa gaaccgcaga aggtcgagat
      421 tttctcacaa agtttgcttg tcgaaccagg gcgtcgtgaa ggccaggccc cagattcagg
      481 gatctcagac tggacccacc aacaggtgcc tagcatgtct ggggctcccc tcccgccaca
      541 aggcctcaga gaggctacac accaaccttt gggaacaaga cctgaggatg tagagagaag
      601 tcacccggcc tctgagctgc tgtggcaaga gtcacctcag aaggaagcct ggggcaaaga
      661 caggctggga agtgaggagg aggtggacga agacatcacc atggatgaat cgtcccagga
      721 atcccctccc tcccaagcct ccctggcccc tggcacggcc acccctcagg cccgctccgt
      781 ttctgcttcc ggggtctctg gggagaccac tagcatccct ggattcccag ctgagggttc
      841 catcccactt cctgctgatt tcttctccaa agtctccgca gagacccagg cctcaccgcc
      901 agaagggcct ggcacggggc cctcggagga agggcacgag gctgcccctg agttcacatt
      961 ccacgtggaa atcaaagcca gcgcgccgaa ggaacaggat ttggaagggg ctacagtggt
     1021 gggggcccct gcagaggagc aaaaggcccg aggcccctct gtgggaaagg gcacgaaaga
     1081 ggctagcctt ctggaaccaa ctgacaagca acctgcagcc ggcctgccag gaaggccagt
     1141 cagtcgggtt cctcaactta aagctcgagt ggccggcgta agcaaagaca ggacaggaaa
     1201 tgacgagaag aaagccaagg gcgccgatgg caaaacgggg gcgaagatcg ccacacctcg
     1261 gggagcagcc actccgggcc agaaaggcac atccaatgcc accaggatcc cagccaagac
     1321 cacacccagc ccaaagactc ctccaggatc aggtgaacca ccaaaatccg gagaacgaag
     1381 cggctacagc agccccggct cgcccggaac ccctggcagt cgctcccgta ccccatccct
     1441 accaacgccg cccacccgag agcccaaaaa ggtggcagtg gttcgcactc cccctaagtc
     1501 accgtctgcc agtaagagcc gcctacagac tgcccctgtg cccatgccag acctaaagaa
     1561 cgtcaggtcc aagattggct ccactgagaa cctgaagcac cagccgggag gcggcaaggt
     1621 gcaaatagtc tacaagccag tggacctgag caaggtgacc tccaagtgtg gttccttagg
     1681 gaacatccat cacaagccag gaggtggcca ggtagaagta aaatcagaga agctggactt
     1741 caaggataga gtccagtcga agattggctc cttggataac atcacccatg tccctggagg
     1801 agggaataag aagattgaaa cccacaagct gaccttcagg gagaatgcca aagccaagac
     1861 agaccatgga gcagaaatcg tgtacaagtc acctgtggtg tctggggaca catctccacg
     1921 gcacctcagc aacgtctcct ccacgggcag catcgacatg gtggactctc cacagcttgc
     1981 cacgttagcc gatgaagtgt ccgcctcttt ggccaagcag ggtttgtgat caggcccctg
     2041 gggccgtcac tgatcatgga gagaagagag agtgagagtg tggaaaaaaa aaaaaaaaaa
     2101 agaatgacct ggcccctcac cctctgccct ccccgctgct cctcatagac aggctgacca
     2161 gcttgtcacc taacctgctt ttgtggctcg ggtttggctc gggacttcaa aatcagtgat
     2221 gggaaaaagt aaatttcatc tttccaaatt gatttgtggg ctagtaataa aatattttta
     2281 aggaaggaaa aaaaaaaaaa cacgtaaaac catggccaaa caaaacccaa catttccttg
     2341 gcaattgtta ttgaccccgc cccccccctc tgagttttag agggtgaagg aggctttgga
     2401 tggaggctgc ttctggggat tggctgaggg actagggcaa ctaattgccc acagccccat
     2461 cttaggggca tcagggacag cggcagcaat gaaagacttg ggacttggtg tgtttgtgga
     2521 gccgtaggca ggtgatgtta actttgtgtg ggtttgaggg aggactgtga tagtgaaggc
     2581 tgagagatgg gtgggctggg agtcagagga gagaggtgag gaagacaggt tgggagaggg
     2641 gacattggct ccttgccaag gagcttggga agcacaggta gccctggctg cctgcagcag
     2701 tcttagctag cacagatgcc tgcctgagaa agcacagtgg ggtacagtgg gtgtgtgtgc
     2761 cccttctgaa gggcagccca tgggagaagg ggtattgggc agaaggaagg taggccagaa
     2821 ggtggcacct tgtagattgg ttctctgaag gctgaccttg ccatcccagg gcactggctc
     2881 ccaccctcca gggagggagg tcctgagctg aggagcttcc ctttgctctc acaggaaaac
     2941 ctgtgttact gagttctgaa gtttggaact acagccatga ttttggccac catacagacc
     3001 tgggacttta gggctaacca gttctttgta aggacttgtg cctcttgcgg gaacatctgc
     3061 ctgttctcaa gcctggtcct ctggcacttc tgcagtgtga gggatggggg tggtattctg
     3121 ggatgtgggt cccaggcctc ccatccctcg cacagccact gtatcccctc tacctgtcct
     3181 atcatgccca cgtctgccat gagagccagt cactgccgtc cgtacatcac gtctcaccgt
     3241 cctgagtgcc cagcctcccc aagccccatc cctggcccct gggtagttat ggccaatatc
     3301 tgctctacac taggggttgg agtccaggga aggcaaagat ttgggccttg gtctctagtc
     3361 ctacgttgca cgaatccaac cagtgtgcct cccacaagga accttacaac cttgtttggt
     3421 ttgctccatc atttcccatc gtggatggga gtccgtgtgt gcctggagat taccctggac
     3481 acctctgctt tttttttttt actttagcgg ttgcctccta ggcctgactc cttcccatgt
     3541 tgaactggag gcagccacgt taggtgtcaa tgtcctggca tcagtatgaa cagtcagtag
     3601 tcccagggca gggccacact tctcccatct tctgcttcca ccccagcttg tgattgctag
     3661 cctcccagag ctcagccgcc attaagtccc catgcacgta atcagccctt cataccccaa
     3721 tttggggaac ataccccttg attgaaatgt tttccctcca gtcctatgga agcggtgctg
     3781 cctgccctgc tggagcagcc agccatctcc agagacgcag ccctttctct cctgtccgca
     3841 ccctgttgcg ctgtagtcgg attcgtctgt ttgtctgggt tcaccagagt gactatgata
     3901 gtgaaaagaa aaagaaaaag aaaaaagaaa aaagaaaaaa aaaaaaggac gcatgttatc
     3961 ttgaaatatt tgtcaaaagg ttgtagccca ccgcagggat tggagggcct ggatattcct
     4021 tgtcttcttc gtgacttagg tccaggccgg tgcagtgcta ccctgctggg acatcccatg
     4081 ttttgaaggg tttcttcttc atctgggacc ctgcagacac tggattgtga cattggaggt
     4141 ctatgacatt ggccaaggcc tgaagcacag gacccgttag aggcagcagg ctccgactgt
     4201 cagggagagc ttgtggctgg cctgtttctc tgagtgaaga tggtcctctc taatcacaac
     4261 ttcaagtccc acagcagccc tggcagacat ctaagaactc ctgcatcaca agagaaaagg
     4321 acactagtac cagcagggag agctgtggcc ctagaaattc catgactctc cactacatat
     4381 ccgtgggtcc tttccaagcc ttggcctcgt caccaagggc ttgggatgga ctgccccact
     4441 gatgaaaggg acatctttgg agaccccctt ggtttccaag gcgtcagccc cctgaccttg
     4501 catgacctcc tacagctgta aggatgaggc ctttaaagat taggaacctc aggcccaggt
     4561 cggccacttt gggcttgggt acagttaggg acgatgcggt agaaggaggt ggccaacctt
     4621 tcccatataa gagttctgtg tgcccagagc taccctattg tgagctcccc actgctgatg
     4681 gactttagct gtccttagaa gtgaagagtc caacggagga aaaggaagtg tggtttgatg
     4741 gtctgtggtc ccttcatcat ggttacctgt tgtggttttc tctcgtatac ccatttaccc
     4801 atcctgcagt tcctgtcctt gaataggggt gggggtactc tgccatatct cttgtagggc
     4861 agtcagcccc caagtcatag tttggagtga tctggtcagt gctaataggc agtttacaaa
     4921 ggaattctgg cttgttactt cagtgaggac aatcccccaa gggccctggc acctgtcctg
     4981 tctttccatg gctctccact gcagagccaa tgtctttggg tgggctagat agggtgtaca
     5041 atttgcctgg ttcctccaag ctcttaatcc actttatcaa tagttccatt taaattgact
     5101 tcaatgataa gagtgtatcc catttgagat tgcttgtgtt gtggggtaaa ggggggagga
     5161 ggaacatgtt aagataattg acatgggcaa ggggaagtct tgaagtgtag cagttaaacc
     5221 atcttgtagc cccattcatg atgttgacca cttgctagag agaagaggtg ccataaggct
     5281 agaacctaga ggcttggctg tcccaccaac aggcaggctt ttgcaaggca gaggcagcca
     5341 gctaggtccc tgacttccca gccaggtgca gctctaagaa ctgctcttgc ctgctgcctt
     5401 cttgtggtgt ccagagccca cagccaatgc ctcctcaaaa ccctggcttc cttccttcta
     5461 atccactggc acatcagcat cacctccgga ttgacttcag atccacagcc tacactacta
     5521 gcagtgggta agaccacttc ctttgtcctt gtctgttctc cagaaaagtg ggcatggagg
     5581 cggtgttaat aactataggt ctgtggcttt atgagccttc aaacttctct ctagcttctg
     5641 aaagggttac ttttgggcag tattgcagtc tcaccctccc gatgggctgt agcctgtgca
     5701 gttgctgtac tgggcatgat ctccagtgct tgcaagtccc atgatttctt tggtgatttt
     5761 gagggtgggg ggagggacat gaatcatctt agcttagctt cctgtctgtg aatgtccata
     5821 tagtgtactg tgttttaaca aacgatttac actgactgtt gctgtacaag tgaatttgga
     5881 aataaagtta ttactctgat taaa
//
