LOCUS       XM_039085762            5115 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus microtubule-associated protein tau
            (Mapt), transcript variant X29, mRNA.
ACCESSION   XM_039085762
VERSION     XM_039085762.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5115
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5115
                     /gene="Mapt"
                     /gene_synonym="MAPT_0N4R; Mtapt; pTau; RNPTAU; Tau"
                     /note="microtubule-associated protein tau; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 80 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     20 samples with support for all annotated introns"
                     /db_xref="GeneID:29477"
                     /db_xref="RGD:69329"
     CDS             167..1240
                     /gene="Mapt"
                     /gene_synonym="MAPT_0N4R; Mtapt; pTau; RNPTAU; Tau"
                     /codon_start=1
                     /product="microtubule-associated protein tau isoform X24"
                     /protein_id="XP_038941690.1"
                     /db_xref="GeneID:29477"
                     /db_xref="RGD:69329"
                     /translation="MTRRKPSPAVCPEPATSPKYVSSVTPRNGSPGTKQMKLKGADGK
                     TGAKIATPRGAATPGQKGTSNATRIPAKTTPSPKTPPGSASKQPQRKLPPAGAKTERG
                     EPPKSGERSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSASKSRLQ
                     TAPVPMPDLKNVRSKIGSTENLKHQPGGGKVQIINKKLDLSNVQSKCGSKDNIKHVPG
                     GGSVQIVYKPVDLSKVTSKCGSLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSLDNI
                     THVPGGGNKKIETHKLTFRENAKAKTDHGAEIVYKSPVVSGDTSPRHLSNVSSTGSID
                     MVDSPQLATLADEVSASLAKQGL"
ORIGIN      
        1 atgctccaag accaagaagg agacatggac catggcttaa aagagtctcc cccacagccc
       61 ccagccgatg atggatcaga agaaccaggg tcggagacct ctgatgctaa gagcactcca
      121 actgctgaag ctcgagtggc cggcgtaagc aaagacagga caggaaatga cgagaagaaa
      181 gccaagccct gccgtgtgcc ctgagccagc cacctctcct aaatacgtct cttctgtcac
      241 accccgaaat ggcagtcctg gaacaaagca gatgaaactc aagggcgccg atggcaaaac
      301 gggggcgaag atcgccacac ctcggggagc agccactccg ggccagaaag gcacatccaa
      361 tgccaccagg atcccagcca agaccacacc cagcccaaag actcctccag gatcagcttc
      421 caagcaaccg cagagaaaac taccccctgc aggggcaaaa actgagagag gtgaaccacc
      481 aaaatccgga gaacgaagcg gctacagcag ccccggctcg cccggaaccc ctggcagtcg
      541 ctcccgtacc ccatccctac caacgccgcc cacccgagag cccaaaaagg tggcagtggt
      601 tcgcactccc cctaagtcac cgtctgccag taagagccgc ctacagactg cccctgtgcc
      661 catgccagac ctaaagaacg tcaggtccaa gattggctcc actgagaacc tgaagcacca
      721 gccgggaggc ggcaaggtgc agataattaa taagaagctg gatcttagca acgtccagtc
      781 caagtgtggc tcaaaggaca atatcaaaca cgtcccgggc ggaggcagtg tgcaaatagt
      841 ctacaagcca gtggacctga gcaaggtgac ctccaagtgt ggttccttag ggaacatcca
      901 tcacaagcca ggaggtggcc aggtagaagt aaaatcagag aagctggact tcaaggatag
      961 agtccagtcg aagattggct ccttggataa catcacccat gtccctggag gagggaataa
     1021 gaagattgaa acccacaagc tgaccttcag ggagaatgcc aaagccaaga cagaccatgg
     1081 agcagaaatc gtgtacaagt cacctgtggt gtctggggac acatctccac ggcacctcag
     1141 caacgtctcc tccacgggca gcatcgacat ggtggactct ccacagcttg ccacgttagc
     1201 cgatgaagtg tccgcctctt tggccaagca gggtttgtga tcaggcccct ggggccgtca
     1261 ctgatcatgg agagaagaga gagtgagagt gtggaaaaaa aaaaaaaaaa aagaatgacc
     1321 tggcccctca ccctctgccc tccccgctgc tcctcataga caggctgacc agcttgtcac
     1381 ctaacctgct tttgtggctc gggtttggct cgggacttca aaatcagtga tgggaaaaag
     1441 taaatttcat ctttccaaat tgatttgtgg gctagtaata aaatattttt aaggaaggaa
     1501 aaaaaaaaaa acacgtaaaa ccatggccaa acaaaaccca acatttcctt ggcaattgtt
     1561 attgaccccg ccccccccct ctgagtttta gagggtgaag gaggctttgg atggaggctg
     1621 cttctgggga ttggctgagg gactagggca actaattgcc cacagcccca tcttaggggc
     1681 atcagggaca gcggcagcaa tgaaagactt gggacttggt gtgtttgtgg agccgtaggc
     1741 aggtgatgtt aactttgtgt gggtttgagg gaggactgtg atagtgaagg ctgagagatg
     1801 ggtgggctgg gagtcagagg agagaggtga ggaagacagg ttgggagagg ggacattggc
     1861 tccttgccaa ggagcttggg aagcacaggt agccctggct gcctgcagca gtcttagcta
     1921 gcacagatgc ctgcctgaga aagcacagtg gggtacagtg ggtgtgtgtg ccccttctga
     1981 agggcagccc atgggagaag gggtattggg cagaaggaag gtaggccaga aggtggcacc
     2041 ttgtagattg gttctctgaa ggctgacctt gccatcccag ggcactggct cccaccctcc
     2101 agggagggag gtcctgagct gaggagcttc cctttgctct cacaggaaaa cctgtgttac
     2161 tgagttctga agtttggaac tacagccatg attttggcca ccatacagac ctgggacttt
     2221 agggctaacc agttctttgt aaggacttgt gcctcttgcg ggaacatctg cctgttctca
     2281 agcctggtcc tctggcactt ctgcagtgtg agggatgggg gtggtattct gggatgtggg
     2341 tcccaggcct cccatccctc gcacagccac tgtatcccct ctacctgtcc tatcatgccc
     2401 acgtctgcca tgagagccag tcactgccgt ccgtacatca cgtctcaccg tcctgagtgc
     2461 ccagcctccc caagccccat ccctggcccc tgggtagtta tggccaatat ctgctctaca
     2521 ctaggggttg gagtccaggg aaggcaaaga tttgggcctt ggtctctagt cctacgttgc
     2581 acgaatccaa ccagtgtgcc tcccacaagg aaccttacaa ccttgtttgg tttgctccat
     2641 catttcccat cgtggatggg agtccgtgtg tgcctggaga ttaccctgga cacctctgct
     2701 tttttttttt tactttagcg gttgcctcct aggcctgact ccttcccatg ttgaactgga
     2761 ggcagccacg ttaggtgtca atgtcctggc atcagtatga acagtcagta gtcccagggc
     2821 agggccacac ttctcccatc ttctgcttcc accccagctt gtgattgcta gcctcccaga
     2881 gctcagccgc cattaagtcc ccatgcacgt aatcagccct tcatacccca atttggggaa
     2941 catacccctt gattgaaatg ttttccctcc agtcctatgg aagcggtgct gcctgccctg
     3001 ctggagcagc cagccatctc cagagacgca gccctttctc tcctgtccgc accctgttgc
     3061 gctgtagtcg gattcgtctg tttgtctggg ttcaccagag tgactatgat agtgaaaaga
     3121 aaaagaaaaa gaaaaaagaa aaaagaaaaa aaaaaaagga cgcatgttat cttgaaatat
     3181 ttgtcaaaag gttgtagccc accgcaggga ttggagggcc tggatattcc ttgtcttctt
     3241 cgtgacttag gtccaggccg gtgcagtgct accctgctgg gacatcccat gttttgaagg
     3301 gtttcttctt catctgggac cctgcagaca ctggattgtg acattggagg tctatgacat
     3361 tggccaaggc ctgaagcaca ggacccgtta gaggcagcag gctccgactg tcagggagag
     3421 cttgtggctg gcctgtttct ctgagtgaag atggtcctct ctaatcacaa cttcaagtcc
     3481 cacagcagcc ctggcagaca tctaagaact cctgcatcac aagagaaaag gacactagta
     3541 ccagcaggga gagctgtggc cctagaaatt ccatgactct ccactacata tccgtgggtc
     3601 ctttccaagc cttggcctcg tcaccaaggg cttgggatgg actgccccac tgatgaaagg
     3661 gacatctttg gagaccccct tggtttccaa ggcgtcagcc ccctgacctt gcatgacctc
     3721 ctacagctgt aaggatgagg cctttaaaga ttaggaacct caggcccagg tcggccactt
     3781 tgggcttggg tacagttagg gacgatgcgg tagaaggagg tggccaacct ttcccatata
     3841 agagttctgt gtgcccagag ctaccctatt gtgagctccc cactgctgat ggactttagc
     3901 tgtccttaga agtgaagagt ccaacggagg aaaaggaagt gtggtttgat ggtctgtggt
     3961 cccttcatca tggttacctg ttgtggtttt ctctcgtata cccatttacc catcctgcag
     4021 ttcctgtcct tgaatagggg tgggggtact ctgccatatc tcttgtaggg cagtcagccc
     4081 ccaagtcata gtttggagtg atctggtcag tgctaatagg cagtttacaa aggaattctg
     4141 gcttgttact tcagtgagga caatccccca agggccctgg cacctgtcct gtctttccat
     4201 ggctctccac tgcagagcca atgtctttgg gtgggctaga tagggtgtac aatttgcctg
     4261 gttcctccaa gctcttaatc cactttatca atagttccat ttaaattgac ttcaatgata
     4321 agagtgtatc ccatttgaga ttgcttgtgt tgtggggtaa aggggggagg aggaacatgt
     4381 taagataatt gacatgggca aggggaagtc ttgaagtgta gcagttaaac catcttgtag
     4441 ccccattcat gatgttgacc acttgctaga gagaagaggt gccataaggc tagaacctag
     4501 aggcttggct gtcccaccaa caggcaggct tttgcaaggc agaggcagcc agctaggtcc
     4561 ctgacttccc agccaggtgc agctctaaga actgctcttg cctgctgcct tcttgtggtg
     4621 tccagagccc acagccaatg cctcctcaaa accctggctt ccttccttct aatccactgg
     4681 cacatcagca tcacctccgg attgacttca gatccacagc ctacactact agcagtgggt
     4741 aagaccactt cctttgtcct tgtctgttct ccagaaaagt gggcatggag gcggtgttaa
     4801 taactatagg tctgtggctt tatgagcctt caaacttctc tctagcttct gaaagggtta
     4861 cttttgggca gtattgcagt ctcaccctcc cgatgggctg tagcctgtgc agttgctgta
     4921 ctgggcatga tctccagtgc ttgcaagtcc catgatttct ttggtgattt tgagggtggg
     4981 gggagggaca tgaatcatct tagcttagct tcctgtctgt gaatgtccat atagtgtact
     5041 gtgttttaac aaacgattta cactgactgt tgctgtacaa gtgaatttgg aaataaagtt
     5101 attactctga ttaaa
//
