LOCUS       XM_006246318            4645 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mitogen-activated protein kinase 9
            (Mapk9), transcript variant X1, mRNA.
ACCESSION   XM_006246318
VERSION     XM_006246318.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006246318.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006246318.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4645
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4645
                     /gene="Mapk9"
                     /gene_synonym="SAPK"
                     /note="mitogen-activated protein kinase 9; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 69 ESTs, 4 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 106 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:50658"
                     /db_xref="RGD:628847"
     CDS             340..1533
                     /gene="Mapk9"
                     /gene_synonym="SAPK"
                     /codon_start=1
                     /product="mitogen-activated protein kinase 9 isoform X1"
                     /protein_id="XP_006246380.1"
                     /db_xref="GeneID:50658"
                     /db_xref="RGD:628847"
                     /translation="MVRQSAAATSLARQSAAFDTVLGINVAVKKLSRPFQNQTHAKRA
                     YRELVLLKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIHMELDHERM
                     SYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYV
                     VTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGCVIFQGTDHIDQWNKVIEQLGTP
                     SAEFMKKLQPTVRNYVENRPKYPGIKFEELFPDWIFPSESERDKIKTSQARDLLSKML
                     VIDPDKRISVDEALRHPYITVWYDPAEAEAPPPQIYDAQLEEREHAIEEWKELIYKEV
                     MDWEERSKNGVKDQPSDAAVSSKATPSQSSSINDISSMSTEHTLASDTDSSLDASTGP
                     LEGCR"
ORIGIN      
        1 atcctgtatg acactacatc atgagtgaca gtaaaagcga tggccagttt tacagtgtgc
       61 aagtggcaga ctcaactttc actgttctaa aacgttacca gcagttgaaa ccaattggct
      121 ctggagccca aggaattgtt tggcgccatc agtgcagtgc cttgccattc attggcagga
      181 tgaggccagg cagtgtcatt atcacaccat ggattaacca ggaagggatg ctgtgtgagg
      241 ggttgggctg gccgtctcct ctttggtgtc tctcttcaac tatgtgtcca gcccaggacg
      301 tcagaaccat tggtctgacc ctgaacctta ggctcttgca tggtaagaca gtcagctgct
      361 gcgacatcac tggccagaca aagtgctgct tttgatacag ttcttggaat aaatgttgct
      421 gtcaagaagt taagtcgtcc ttttcagaac caaacgcatg caaagagagc ctaccgtgaa
      481 cttgtcctcc taaagtgtgt caatcataaa aatataatta gcttgttaaa tgtgttcaca
      541 ccacaaaaaa cgctagaaga attccaagat gtgtacttgg ttatggagtt aatggacgct
      601 aacttatgtc aggttattca tatggagctg gaccatgaaa gaatgtcata cctcctctac
      661 cagatgcttt gtggcattaa gcacctgcat tcagctggca taattcatag ggatttgaag
      721 cctagcaaca ttgtagtaaa atcagactgt actctcaaga tccttgactt tggcctggca
      781 cggacagcct gtaccaactt tatgatgact ccctatgtgg taactcgcta ctatcgggct
      841 ccagaagtca tcctgggcat gggctacaag gagaatgttg atatctggtc agtgggttgc
      901 atcatgggag agctggtgaa aggttgtgtg atattccaag gtactgacca tattgatcaa
      961 tggaataaag ttattgaaca gctaggaaca ccatccgcag agttcatgaa gaaacttcag
     1021 ccaactgtaa ggaattatgt ggaaaacaga ccaaagtacc ctggaatcaa atttgaagag
     1081 ctctttccag attggatatt tccgtcagaa tccgaacgag acaaaataaa aacaagtcaa
     1141 gccagagatc tgttatcgaa aatgttagtg attgatccgg acaagcggat ctctgtggac
     1201 gaagccttgc gccacccgta tattactgtt tggtatgacc ccgctgaagc agaagcgcca
     1261 ccacctcaaa tttatgatgc ccagttggaa gaaagagagc atgcgattga agagtggaaa
     1321 gaactaattt acaaagaagt gatggactgg gaagaaagaa gcaagaatgg ggtgaaagac
     1381 cagccttcag atgcagcagt aagcagcaag gctactcctt ctcagtcgtc atccatcaat
     1441 gacatctcat ccatgtccac tgagcacacc ctggcctcag acacagacag cagtctcgat
     1501 gcctcaaccg gacccctgga aggctgccga tgaaacctcg cagatggcgc acttgtctgt
     1561 gaaggactct ggcttccatg gccctgagca catgggagct ggtggaacca aatcaagaag
     1621 ctccatgttc tgcatgtaag aaacacgacg ccttgccccc actcagttcc agtaggattg
     1681 cctgcgtaga ctgtaacatg aggcagacga tgtctggaga aaaagtacaa accacactgt
     1741 tagaaatttt gttcaagatc atttcaggtg agcaattaga atagccgagt ttctttttcc
     1801 agtcgtgtgg tgtccttggt gacagatcat gtgtaactgt ggggactcgt atgcatgtga
     1861 ccacaaatgc ttgcttgaac ttgcccatgt agcactttgg gaatcagtat ttaaatgcca
     1921 aataatcttc caggtagttc tgcttctaga ataatctctt aatcctcttt agtaatttgg
     1981 tgtctgtcca caaaaaaata gatcatgtgt atgaattggc cactatcata ttatcatatt
     2041 ttacccactt ttatggtatg atttattctg tcttttgtat ttcagaagga atataattaa
     2101 atttatttaa taaataaaac tacagctttt cttaaatttg tgatgtttta ggctgagaat
     2161 taccactgct ttatatcgac actctgtgtc ctttaaactg cccactatgg gaaactttac
     2221 gtacagcttt ctgcatgaca aagttccaag ttgtatttca ctctgcttaa cgacttatgt
     2281 caccttgaat cctgaccaca catttccttt ttcttggtcc tctgaacttg gatctagaat
     2341 ccctcacaga acttcacctt ctttatcaca aagcacccca tctcagtaga atgaatcggc
     2401 agattcctga gccccgctgc ctaatgtaga gctgacaggg tggcttcccc agaacggtgg
     2461 gtgggtgcct ccttccctga gcccacccat cctttgctcc cctctcttta tttaaggtga
     2521 aaggtgattg ggtctcatag cctttccttt tgtagcattg cctaacttgt ctttctcact
     2581 gacagaagcc accacgtcca gccagagcac atggtctctt aggagaccgg gcttacttac
     2641 catgcatgtt tgctgctgtc cttttccatt ttgtggaggc atttcctttt tctaagggaa
     2701 ttcctcagat gttctagaaa cattcagaag aacgcagaag aaatattcta gagaattagg
     2761 ggttcattct tgaatatttt ctgatttaaa actgctcacc tgaaattgat actttcagat
     2821 cctgatctgt aaattactcg agatttggta agatgctgag ttctctgtgt tgttgcagaa
     2881 ttggagttgg gatgatcata ccttggctac ctgcgctcag agcatttcct tcttgagctt
     2941 attttgttaa caattcatat cttgtgttca gttactttgg gagctatgga gtgtgttata
     3001 gaaggaaatt tgataagaac ttttatggaa agtaccatct aatacgtgat tctgtctgca
     3061 ccagttgtat cctaatggtt ggtctgatca ttggaacctt taatgaacaa tgttaatctg
     3121 aagtaaggat tagctttata tcacatgtgg acactttcag ttacaaatgc tagtgcgggt
     3181 gagggcagag acacctgcct atggcttcag gttattgggc cctgggaggc tgaagtttca
     3241 cagcgtcata ctgtgctctt ccctcggatg cacattcttg aaatgacttc cctgaaactt
     3301 aaggaggaaa tcagaaaggc actgcattat ctgccctaca ctgtaagggg agcatgctgt
     3361 gatagaggct cgccctggtc ccacagacag gaggcagctg tgagtggatc caggcgccct
     3421 caaagagtgg ctttctcccc ccttactctg cctatctatc aacactgttt tggatggagc
     3481 ctgtgctggt gtggacaggg tctcatgcca agactctcct ccatcaggca agtgcaccta
     3541 ggactggcca cagcgcccca aagaaatacc tcaccccagt ttcagggtcc tccctcctga
     3601 gcctagcttt gccagggtcc tgggacaatg cgaatggttt tgagctgacc tctgtaggca
     3661 aatgctgatg ttggataaag aactgaaaaa tgtgctcaac tttctcatct tttctatttt
     3721 atttttgtaa tttatattgt acacaccctg gaagtcacta ttttggacat gtatttttat
     3781 aaaccgggta actaatgatt atctggaatt tgcactaggt tagtttttgt tgttgttggc
     3841 ttaattttca gccaaaagtg gaatgactgc cccttccagg tctgagtttt catttcaagc
     3901 gcaggtctgg agggcagaca tgtccagcca gggtaggagc gcggcctcag aactcgggct
     3961 gcagagtgcc tcaagcactg ggcctgcagt cagaactgtg ctctcatctt tagaacacaa
     4021 agaccagtcc ccggtgttag aaagagaaag ccctccattg gcccttgttg acagccaggg
     4081 cctgcatcta aagtaaaaag cccaacactg gtttcatctg ggctgggtgt gtgagtctgt
     4141 ctgctatgac tcctctgatg cctcatgctg gtggtaagta cagtatgacc tttcaggttg
     4201 tgtatctcaa aagtaactgc ctaatgtttt ataataaaat atatcatgtg ttttgattgg
     4261 tggaaaaata atacaaacta cattttaaaa gagaaatgta cagcatgtcc aatccctgtg
     4321 tgtttcaaag tgacaattga ctgactgtat ctttccacat caccattttg attacaaact
     4381 taacacgaat agatgttgaa gtgtcgtaat ttcagacatt caaaagtgtt ttcaaaccca
     4441 aagttaggag tgctgctgtt cgttctctca cagagaagct cttgcaaatc tctgcacctg
     4501 ttttcaaaac aatgacagtc agttttgact ttaagaaaat tgtacaatat ggttggaata
     4561 ttggtgacgt tgtattctcc caggatgtaa ccaggagaac ctgccaagct gtctttatgt
     4621 atacgtctaa aagccattaa tggtg
//
