LOCUS       NM_001289778            4067 bp    mRNA    linear   ROD 07-JAN-2025
DEFINITION  Rattus norvegicus MAP7 domain containing 2 (Map7d2), mRNA.
ACCESSION   NM_001289778 XM_039099841
VERSION     NM_001289778.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4067)
  AUTHORS   Kikuchi,K., Sakamoto,Y., Uezu,A., Yamamoto,H., Ishiguro,K.I.,
            Shimamura,K., Saito,T., Hisanaga,S.I. and Nakanishi,H.
  TITLE     Map7D2 and Map7D1 facilitate microtubule stabilization through
            distinct mechanisms in neuronal cells
  JOURNAL   Life Sci Alliance 5 (8), e202201390 (2022)
   PUBMED   35470240
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4067)
  AUTHORS   Pan,X., Cao,Y., Stucchi,R., Hooikaas,P.J., Portegies,S., Will,L.,
            Martin,M., Akhmanova,A., Harterink,M. and Hoogenraad,C.C.
  TITLE     MAP7D2 Localizes to the Proximal Axon and Locally Promotes
            Kinesin-1-Mediated Cargo Transport into the Axon
  JOURNAL   Cell Rep 26 (8), 1988-1999 (2019)
   PUBMED   30784582
REFERENCE   3  (bases 1 to 4067)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On or before Sep 2, 2022 this sequence version replaced
            XM_039099841.1, NM_001289778.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.2469475.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-366               JAXUCZ010000021.1  39296330-39296695   c
            367-444             JAXUCZ010000021.1  39251247-39251324   c
            445-608             JAXUCZ010000021.1  39249825-39249988   c
            609-720             JAXUCZ010000021.1  39233270-39233381   c
            721-819             JAXUCZ010000021.1  39231936-39232034   c
            820-930             JAXUCZ010000021.1  39229688-39229798   c
            931-1061            JAXUCZ010000021.1  39222697-39222827   c
            1062-1186           JAXUCZ010000021.1  39220222-39220346   c
            1187-1485           JAXUCZ010000021.1  39204798-39205096   c
            1486-1612           JAXUCZ010000021.1  39203771-39203897   c
            1613-1838           JAXUCZ010000021.1  39198001-39198226   c
            1839-1943           JAXUCZ010000021.1  39196748-39196852   c
            1944-2000           JAXUCZ010000021.1  39195000-39195056   c
            2001-2079           JAXUCZ010000021.1  39194414-39194492   c
            2080-2266           JAXUCZ010000021.1  39193722-39193908   c
            2267-2542           JAXUCZ010000021.1  39184376-39184651   c
            2543-4067           JAXUCZ010000021.1  39181091-39182615   c
FEATURES             Location/Qualifiers
     source          1..4067
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq14"
     gene            1..4067
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /note="MAP7 domain containing 2"
                     /db_xref="GeneID:317508"
                     /db_xref="RGD:1564852"
     exon            1..366
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     CDS             225..2516
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /note="brain-enriched E-MAP-115-like protein"
                     /codon_start=1
                     /product="MAP7 domain-containing protein 2"
                     /protein_id="NP_001276707.1"
                     /db_xref="GeneID:317508"
                     /db_xref="RGD:1564852"
                     /translation="MERSGGNGAGARAGAPSEGAAKGSSLLSAKSTEGATGRFSQSTP
                     RPTGMDGFLKSDERQRLAKERREEREKCLAAREQQILEKQKRAKLQYEKQIEERWRKL
                     EEQRQREDQKRAAVEEKRKQKLREEEERLEAMMRRSLERTQQLELKKKCSWAGSAASG
                     PGGRDGESENTPPLPLTLAASIPPSDTGTATAAAESTNACDKLSTSTMNLPKQTEPPM
                     SKHLSSSIVAISYSPDRALRSPLKSSYKSSPTRTTEKKKNTLLSGVGDAGKGAMTGGE
                     PSQMEKVKKGRGATSVSSGGLGSPLRRCEPPENISKRSSSPVKSKVTAKTYPQSPKTV
                     KPTYIGSPVKYYFPPTPSEETLKKKAEKEKSNKEKEGATGRQTTVLPREETLEKPMAD
                     KDATEKYVADKHATEKHSATGGKAEHSAGKSTAGTTDAGEAAKILAEKRRQARLQKEQ
                     EEQERLEKEEQERLEKEELKRKAEEERLRIEKQEEEKKQQEEEEKRKAEEKAKEKAEE
                     ELLSKEEQEKEKQEKEKKEKAMIEKQIQAEKEAAEAKAQDAAKQMRLEREQIMLQIEQ
                     ERLERKKRIDEIMKRTRKSDASLEVKKEDPKVEIQPLPDVENKIKPVVPNKIEINVLN
                     TCQKVNVSERAAPETFPQDIFSNGLKPVGGPVHPDVLDGKSNSLDDSTEEVQSMDVSP
                     VSKEELISIPEFSPVSEMIPGMSLDQNGTGNARALQDILDFTGPPAFPKKSSENLSLD
                     DCNKNLIEGFNSPGQETTLNTFC"
     exon            367..444
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            445..608
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            609..720
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            721..819
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            820..930
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            931..1061
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            1062..1186
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            1187..1485
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            1486..1612
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            1613..1838
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            1839..1943
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            1944..2000
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            2001..2079
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            2080..2266
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            2267..2542
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
     exon            2543..4067
                     /gene="Map7d2"
                     /gene_synonym="Brelin; Mtap7d2; RGD1564852"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtgagcaca gagcacgtgc agttcccttt gcgcgcccac gcgcccgcgc acccgctggc
       61 ggctgaggag tgacgcaccg gcgagtgcgg gagggtccgt gcagcgagcc caggcagggt
      121 gaggacagcg cacaaggtgg gaggccgcgt gcgcatgcgg acacgcgcgg agccggtgcg
      181 acacagcggg ccggacagtg cgcctgtgca gcccgctcat cccgatggag cgcagcggtg
      241 ggaacggcgc cggagccaga gccggagccc cctctgaggg ggctgcgaag ggctcttcgc
      301 tgctgtctgc gaagtccacg gaaggggcca cggggcgatt ctcgcagtcc accccccggc
      361 ctacaggaat ggatggattt ttaaaatcag atgagagaca aagattagcc aaagagagac
      421 gagaagaaag agaaaagtgt ctggctgctc gggaacaaca gatcttagag aaacagaaaa
      481 gagctaagct tcagtatgag aaacaaattg aggagcgatg gagaaaactt gaggagcagc
      541 gccagcgtga ggatcagaag agggcagcag tggaagaaaa gaggaagcag aagctccggg
      601 aagaagagga gcgtctggaa gcaatgatgc gccgctccct ggagcgtaca cagcagctag
      661 agctgaagaa gaagtgctca tgggcaggat cagcagcttc agggcctgga ggacgtgatg
      721 gtgaatcaga aaatacccca ccccttcctc taactttagc agccagcata cccccttcgg
      781 acacagggac cgctacagct gctgccgagt ccaccaacgc atgtgacaaa ctttcaacat
      841 caaccatgaa tttgccaaag cagacggaac ctcctatgag taaacacctg tcttcatcca
      901 tcgtggcaat atcttattcc ccagaccgag ctctcaggag ccctctcaaa tcgtcataca
      961 agtcctctcc aacccggacc actgagaaaa agaagaatac acttttatct ggtgtgggag
     1021 atgctgggaa gggagccatg actggaggag agccttcaca gatggagaaa gtgaagaagg
     1081 gacgaggggc aacttctgtt tcttctgggg gtcttgggtc cccactgaga agatgcgagc
     1141 ctcctgaaaa catttccaag aggtcatctt ctcctgtgaa atccaaggta actgcaaaaa
     1201 catatccaca gtctccaaag acagtgaagc ccacatacat agggtctcct gtgaagtatt
     1261 actttccacc cactccaagt gaagaaacac tcaagaagaa ggcagaaaaa gagaagagta
     1321 ataaggaaaa ggaaggtgcc actggtcggc agaccactgt tctacccaga gaagaaaccc
     1381 tggagaagcc catggctgac aaggatgcca ctgagaagta tgtagctgat aagcatgcaa
     1441 ctgagaaaca ttctgccacc ggagggaagg ctgagcacag tgcaggaaaa tccacagcag
     1501 gcaccacaga tgcaggggag gctgcaaaga tcctagctga aaagagacgt caggctcggc
     1561 tacagaagga acaggaggag caagaacggc tggagaagga agaacaagag aggctggaaa
     1621 aagaggaatt gaaaagaaag gcagaagagg aaaggctgcg catagaaaaa caagaagaag
     1681 aaaagaagca gcaggaggaa gaagagaaaa gaaaggcaga agagaaggca aaagagaagg
     1741 ctgaggagga gctgttgtca aaagaggagc aagaaaagga aaaacaagaa aaagaaaaga
     1801 aggaaaaagc catgattgaa aagcagatac aagctgagaa agaagcagca gaagcaaagg
     1861 cgcaggatgc cgctaaacag atgcgtttag aaagagaaca gatcatgctg cagattgagc
     1921 aggaacgact ggagaggaag aagagaatag atgaaatcat gaagagaaca aggaagagtg
     1981 atgcgtctct agaagtgaag aaggaagacc ccaaagtgga gattcagcct cttccagatg
     2041 tcgaaaataa gataaaacca gttgtcccca acaaaataga aatcaatgtg ttgaacacct
     2101 gccagaaagt aaatgtctca gagcgtgctg ctccagaaac cttcccccaa gacattttct
     2161 ctaatggtct taaaccagtt gggggacctg ttcatccgga tgtccttgat gggaagtcaa
     2221 acagtctgga tgattcaact gaagaagttc aatctatgga tgtgagtcct gtttccaaag
     2281 aagagcttat ctccatccca gaattttcac cagtgagtga aatgattcct gggatgtctc
     2341 tggatcaaaa tggaactggt aatgcccggg cacttcaaga tattttagat ttcactggcc
     2401 ctccagcatt ccccaagaaa tccagtgaaa acctcagcct tgatgactgt aacaaaaacc
     2461 tcatcgaagg atttaacagt cctgggcaag aaactacgct gaacaccttc tgttgacaaa
     2521 gaaaacattt ctttaatgaa aggtggtatt tggatcgccc atgaagctgt cagtgttgaa
     2581 tctgagctgc tggccaccta aagaagcttc ttttgccctt aactgctgga ttccaaattg
     2641 ctagattcaa aatgtaactg tattattcct aggtagtttg gcaaacactg gtctcttggt
     2701 agaaaccttg agatttttgc tttgtggggc tttagcaaag tttcatttta tggttctact
     2761 tatgagcttc agctgctgct aaagcacttt cttgaccttc tctactattg taacctgtgt
     2821 aatgctgtct gggaacccga ctttaggaca ctcaagtttc cagagttgga gcacagggac
     2881 atttagatgt ctctccctat aaaaatcttc tatttaccca tactctagtt aaacgtgcac
     2941 tactcaacct gggctgctta tctccctgtc tttgtgtctt tgtgtgtgcg tgtgcatgca
     3001 cgtgcacatt cgcgtgccag agagagagag agagagagag agagagagag agtgagtgtg
     3061 agtgtgagtg agagcgcaag tgcgagcgag agagtgtgtg agtatggggt gggggaaatc
     3121 tagctacttt ctctccatct caggtttctg ttattttatt attaagcttc atcatctgca
     3181 gaacattacc ctcctttact gtttagggat tgaagaaatg tttagttgaa taaataatta
     3241 aatagtggca attatttctt ttcccttatg ggaactcaaa tctagcaatg atgctttcat
     3301 gtcataccct taaaaccccc gaattgtcac tccaaaccat tgaatggctt ttcagctgaa
     3361 tgaatcaagt aacatacagg tggttatttt catggttttg ctgttgtttt tctattagac
     3421 ttggtatttt ctttttgctc ctgtgtttaa ctaactgtaa taaaaaggag tcagtgcttt
     3481 gaaagggggc ccaagttggt tccagtatgt cactttaata ggctttaaac attaaaaagt
     3541 ctgaacaagg aaaaatgaca ctagaatgta taactccgtg tatgccatat gctatattta
     3601 aattttcatt tcttgtggtg aaatgtagct ttactattaa aaatgacttt ttctttggaa
     3661 ctttttgttt tgacttgtac cttaaagctt ttgaaaagat ccttaattct gagatttaca
     3721 aacagaagat acaaagaagt cttaaagctg gtacagttga agaatgtatt agtctaacaa
     3781 actatgtatg tttatgtgat ataatctaaa taaaatacat acctctaaga atgctgtgcc
     3841 attgaccttg atgaatactt aaggagataa atcttttatg acaaacacac aaaagatagc
     3901 atagtctgac atctaaaaca tacctggcta tttttcttaa cactttattt tcctgggtgt
     3961 ctatttcatt gagctccatt gtacctctca acacaattgt gatcacgtga tgcctcattt
     4021 gcataatgtg tacattttgt ctaatgttaa tacattttca ctgaaga
//
