LOCUS       XM_039082636            8896 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus microtubule-associated protein 4
            (Map4), transcript variant X17, mRNA.
ACCESSION   XM_039082636
VERSION     XM_039082636.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082636.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8896
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8896
                     /gene="Map4"
                     /gene_synonym="Mtap4"
                     /note="microtubule-associated protein 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 104 ESTs, 21 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:367171"
                     /db_xref="RGD:1564359"
     CDS             515..6694
                     /gene="Map4"
                     /gene_synonym="Mtap4"
                     /codon_start=1
                     /product="microtubule-associated protein 4 isoform X17"
                     /protein_id="XP_038938564.1"
                     /db_xref="GeneID:367171"
                     /db_xref="RGD:1564359"
                     /translation="MADLSLVDALTEPPPEIEGEIKRDFMAALEAEPYDDIVGETVEK
                     TEFIPLLDGDEKSGNSESKRKPCVDTSQVEDIPSSKPTLLANGDHGVEGNNTTGSPTD
                     FLVENVDYEDYQNSQSWPEDASFCFQPQQVLDTNQADPFNVHHDDGLADLLFVSSGPT
                     NASAFIEENNPLEDSYGVLPCDSFAPTAVVSQEWSVGAPDSPHSEPCVSPEVTIETAQ
                     PATELSKAVDLESVKEQLPAKALEMMAGQTTDAVPSKESEGSPDTDAAPGPDTDVTLT
                     KDIEESSSPDVISANVTQPFTESDMFLTQEMELLIGTEAAQVKDTMSSVEPDISSAKN
                     TAPPTEEETVPGKDMTFPKEAETALPIEMDLAPPEDVALPKETELELAPAAGTAPLSE
                     TEVALAKDEEPSTGIPAAQEMLLSSETEVVLPSDSIMTLTKEVTVPLEAAGPLVSDMT
                     AILETEMTLGGGTATPTETKLGKVKDMAPLPESEVALGKDVVTLPETKVTEFNNVTPL
                     SEEEVASIKDVSPSPETETAKNADLHSGTELTLDNSMTPPSDPALPLETKVATVQIKD
                     KETVQTQEELSEDSQLESVQLEGQSAVPPCTISPEPVKAADQKSTLPVDEGSPLEKLE
                     QKETSGSQPPELCSGFPSSQGKHACRPSDRRSARSKPPRVPPELLEGSSPWKILDPRL
                     GPCPFSELGWVSGSSSCGEHGTQRKVTHAEFLAQRDPGREARDVASMPLVTKKKKKKP
                     KERRRPQARAGGPGDEDNVDGRQDHHPVAHEPQKSGPGPSQPSTVSTEYGCVSREILK
                     QDCAESPRVTSCPEQPPEVMVKAQLKPRVEDDHRDKSPLSENQDNLLQQEEERSPAVL
                     HPKPLVDTGRAVSPSSVKGAPVDSSAHEVSTLRGGCSPLLGQEIMNRVPKPTTEKVQS
                     SLTLPSVANHPLEDGLKEERAGSRATALQVCPNAAGDFRGRRLDTCPEPKQGTSLLAS
                     KEPKEQELIQAPGSQCESFKKMTGDGKSRKGRGPGKVRAGSGKSGGKSEVPFLLDSNK
                     EGRAVPLPSEPVSETGVVSIKDPRRGLCLESSKQPGAITDLSEAVLRVAKEVADGGVG
                     GTMQPLIPLESGSSLSQTLDGRTERRAEVKNVDVSNQSKEGKCTWMNHESTSWITEKT
                     KKRGNEGRNKRFKNNYPVQPSRMEGREEIVSPPCIEKQSNDGNVAHKNSVLGQISPKI
                     HTPLFSHTSSTATEEVADTKSKKVESNSVTLGNPAGNETNSVQNSSVTTEPAAKVTDV
                     SPQDPIQGAGFVPLVKSEENTGQTAVVGKPNKRSNDGKYKKVKNSFPEKHILEINTET
                     TNPMKTTGDCRIEGMGYMDENRNITFTSGRAPSGLMSKSAPLEAIESAGCEMLPCPTP
                     QVGKEDNSFPDSSRKSEQDNNFKLFAQDMCSKDGVPGQENPKAPPAAVPSTTSTEGVA
                     GTCTEAQKKFSSLGDHSLKNKGGLADYSANGEGLTPKSHAVGEPESEQHGSSEHPAQH
                     ATEPAKGYLLPGVLTESQSLPEEVRVLDSYADSGDLPVSLMKEEKRTEKDSAPVRNPD
                     PLRQKAQKFSLCDNQNKKERDSKGPESLDKKVDITLLPPENEKAKLKETNLSCEVTKL
                     ECISMLTTALQSDFSCDSVEGESNVVVTAYKDPQVPEFKGNEVEAPQKITGKSELKVL
                     DERKKEDKSKMAVKGYMRPTKSRGPTPHQPKSASQERERAKLLKASGVSRQEEGKAAV
                     GLTGNDIATPPNKELPPSPEKKAKPITETKVAEKRTSPSKPSSAPALRPGPKTTPTIS
                     KATSPSTLVSTGSSSRSPSTTLPKRPTTTKTEGKPADVKRMTAKSATADLSRSKTTSA
                     SSVKRNTTPTGATPPAGMASTRVKPMSAPCRSSVALSVDKKPTSTKPSSSAPRVSRLA
                     TTVSAPDLKSVRSKVGSTENMKHQPGGGRVQIQNKKVDISKVSSKCGSKANIKHKPGG
                     GDVKIESQKLNFKEKAQAKVGSLDNVGHLPAGGTVKTEGGGSEAPPCPGPPAGEEPAI
                     PEAAPDAGAPTSASGLSGHTTLSGGGDQREPQTLDSQIQETSI"
ORIGIN      
        1 ccaccagtca gggccggcgg ggcccactca ggcccacccg cacgcaggcc gcgtgcgcct
       61 gacactacca tcctctctgc tggaaaagga agcggcggcc atctcagaac ggcggaggcg
      121 gcctgaggct cgccattcgc tgagacatcc gcgggcggga ggccgtggtc tagacccccg
      181 acgcgcgcct cgccaacggt ccaccgctcg tgccgctttc acggagaggt cgaggagcag
      241 gggtcggcgt ggattggttc gtgacgcctc ggcccgccct tccctggcgc ccattggctg
      301 aggcggcacc cgctgacggc gaggacgctc cgccttcgtg cgggccttca agagggcgac
      361 gaggaagcgg ccacctccct gtgccccgcc cctccggcta gctctgtggc ttctgcggct
      421 cctcccggct gctccgggct cctctctgcc ctctcccggc tttctgcggc tccagcttgg
      481 gctcggcggc ggcgggcagt cgcagtggta aagaatggcg gacctcagcc ttgtggatgc
      541 attgacagag ccacctccag aaattgaagg agagataaag cgagacttta tggctgcgct
      601 ggaggcagag ccctatgatg acattgtggg agaaactgtg gagaagactg agtttattcc
      661 tctcctggat ggtgatgaga aatctgggaa ctcagagtcc aaaaggaaac catgtgtaga
      721 cactagccag gttgaagata tcccatcttc taaaccaaca cttctagcca atggtgatca
      781 tggagtggag gggaataaca ctacagggtc tccaactgac ttcctcgtag agaacgtgga
      841 ctatgaggac tatcagaaca gccagagctg gccggaagat gcaagctttt gtttccagcc
      901 tcagcaagtg ctggacacta accaggctga tccctttaac gtgcaccatg atgatggtct
      961 tgcagatctg ctctttgtct ccagtggacc cacaaatgct tctgcattta tagaggaaaa
     1021 caatcctttg gaagacagtt atggtgtgct tccctgtgac tcgtttgctc ccacggctgt
     1081 tgtatctcag gagtggtctg tgggagcccc agactctcca cactcagagc cctgcgtttc
     1141 cccagaggtt actatagaaa ctgcacagcc agcaacagag ctatccaagg cagtcgactt
     1201 ggagtcagta aaagagcagc tgccagctaa agcattggaa atgatggcag gacaaaccac
     1261 tgatgcggtg ccatctaaag aatcagaggg ctctccagac acagatgcag caccaggtcc
     1321 agacacagac gtgacactga ctaaagacat agaagagagc agcagtccag atgtgatatc
     1381 ggcaaatgtc acacagccat tcactgaatc agatatgttc ctgacccagg aaatggaact
     1441 actcatagga acagaggcag cccaggttaa agacaccatg tcgtctgtag aaccagatat
     1501 atcttcagcc aagaacacag caccgcctac agaagaagaa acggtcccag gcaaggatat
     1561 gacattcccc aaagaagcag agacagcact tccaatagaa atggatttgg caccacctga
     1621 ggatgtggca cttcccaaag aaacagagct agaactagcc ccagccgcgg gcacggctcc
     1681 actctcagaa acagaagtgg ccctggcaaa ggatgaggag ccttctacag gaatacctgc
     1741 ggctcaggag atgctcttgt cctcagaaac agaggtggta ctgccctcag attccataat
     1801 gacactgaca aaggaagtga cagtaccctt agaagcagct ggacccctgg tgtcggacat
     1861 gactgcaatt ctggaaacag aaatgaccct aggcgggggg acagctacac ccacagaaac
     1921 aaaattgggc aaggtcaaag acatggctcc actcccagaa tcagaagtgg ctctgggcaa
     1981 ggacgtggtc acacttccag aaacaaaggt tactgaattt aacaatgtga ctccactttc
     2041 agaagaagag gtagcctcaa tcaaggacgt atctccgtct ccagaaacag agacggctaa
     2101 gaatgctgat ctgcactcag gaacagagtt gactctagac aacagcatga ctcccccctc
     2161 ggatcctgca ctgcccctgg aaacaaaagt agccacagtt caaattaaag acaaagaaac
     2221 tgtgcagacc caagaagagc taagtgaaga ctcccagtta gagtctgtgc agctcgaggg
     2281 acagtcagca gtacctcctt gcacgatttc cccagaacca gtgaaagctg cagaccaaaa
     2341 gtctactttg ccagtagatg aaggttctcc attagagaaa ttagagcaga aggaaacatc
     2401 tggcagtcag cctcctgagc tttgctcagg tttcccttcc tcacaaggta aacacgcttg
     2461 cagacccagt gaccgcaggt cagcccggtc taagcctccc agggtccctc ctgagctgct
     2521 ggaaggttct tctccatgga agattcttga tcccaggctg ggcccctgcc cattttctga
     2581 gttgggttgg gtctctggtt cgtcttcctg tggcgagcat gggacccaaa gaaaagttac
     2641 tcatgctgag ttcctagccc agagagatcc tggcagggaa gccagggatg tagcgagcat
     2701 gccgctggtg acgaagaaaa agaagaagaa accaaaggaa agaagacgcc ctcaggcccg
     2761 agctggaggc cctggggatg aggataatgt tgatggacgg caggaccatc atcctgtagc
     2821 tcatgagccc cagaagtcag gtccgggccc cagccagcct tctactgtga gcacagaata
     2881 tggatgtgta tccagagaaa tcttgaagca ggactgtgct gagagtccta gggttacttc
     2941 atgtccagag cagcctccag aagtcatggt aaaagctcag ctcaagccga gagtagaaga
     3001 tgaccacaga gataaaagcc cactgtcaga gaaccaagat aacttgttgc agcaagagga
     3061 agagagatcc ccagctgtat tacacccgaa gcctttagtg gatacaggca gggcagtgag
     3121 tccatctagt gtgaaaggag ccccagttga cagctctgca cacgaagtgt cgactctgcg
     3181 aggggggtgt tcccctttat tgggtcaaga gattatgaat agagttccaa aacctacaac
     3241 agagaaagtt cagtcaagtc tgaccctccc ttcagtagca aaccatccat tagaagatgg
     3301 tctgaaagaa gagcgtgctg gaagtagagc tactgctctg caagtgtgtc ctaatgcagc
     3361 gggggacttt agagggcgaa gactagacac atgccccgag ccaaaacaag gaaccagcct
     3421 gcttgcttct aaggagccga aagaacaaga attaattcag gctcctgggt cacagtgtga
     3481 gtcatttaag aaaatgacag gtgatggcaa aagcaggaag ggaaggggtc ctgggaaagt
     3541 cagagcaggc tcagggaagt caggagggaa atctgaggtg ccattccttc tggacagcaa
     3601 caaggagggg agagccgtac ctttgccaag tgagccagtt tctgaaactg gagtagtgag
     3661 tataaaggat cctagaagag ggctatgctt ggagtcttca aagcaaccag gggccattac
     3721 agatctcagt gaggcagtgc taagggtggc taaagaggtg gctgatggtg gtgtgggagg
     3781 caccatgcag ccattaattc ctttggaaag tgggtcaagt ttgtctcaga ctttggatgg
     3841 tagaacagaa agaagagctg aggttaagaa tgtggacgtc agtaaccaga gcaaggaagg
     3901 gaagtgtact tggatgaatc acgagtcaac ttcctggatt actgaaaaga ctaaaaagag
     3961 aggtaatgaa ggcagaaaca aaaggtttaa aaataattac cccgtacagc ccagcagaat
     4021 ggagggcaga gaggaaatcg tcagcccacc ttgtatagaa aagcagagca atgatggtaa
     4081 tgttgcccat aaaaacagtg tactagggca gatttcccct aaaatacaca ctcctttgtt
     4141 ctcacacacg tcatctacag ccacagagga agtcgctgac accaagagta agaaggtgga
     4201 gtctaattct gttacacttg ggaatcctgc agggaatgaa acaaactcag tccaaaattc
     4261 ttctgttact actgaaccgg ctgccaaggt gacagatgtg agtccccaag acccaatcca
     4321 aggggcaggg tttgttccct tagtaaaatc tgaggaaaac acaggacaga ctgcagtggt
     4381 tgggaaacct aataaaagga gtaatgatgg gaaatacaaa aaggttaaaa atagttttcc
     4441 tgagaagcat attttggaga ttaatacaga gacaacaaat cccatgaaaa ctacaggaga
     4501 ctgcagaatt gaaggaatgg gatatatgga tgaaaataga aatattacat ttacctctgg
     4561 gagagcgcct tcggggctga tgagtaaatc agctccccta gaggctatag aatcggcagg
     4621 ctgtgaaatg ctgccctgtc ctactcctca agtaggaaag gaagataatt ccttcccaga
     4681 cagttccaga aaaagtgagc aagataataa tttcaaatta tttgcacaag atatgtgtag
     4741 caaagatgga gtcccgggtc aagaaaaccc caaggctccc cctgctgctg tgccctccac
     4801 cactagtaca gaaggagttg ctgggacttg cacagaagcc caaaagaagt ttagcagtct
     4861 tggagatcac tctcttaaga ataaaggtgg gcttgctgat tacagtgcaa atggagaagg
     4921 gctaacccct aaaagtcatg cagtagggga acctgagtca gagcagcatg ggtcctctga
     4981 gcatccagca cagcatgcca cagagccagc taagggatac ttgcttcctg gtgtgctcac
     5041 agaaagccag agccttccag aagaggtcag agtcctagac tcatatgcag atagtggtga
     5101 tttgccagtg tctctgatga aggaagagaa gagaacggag aaagactctg ccccagttag
     5161 aaaccctgac cctcttagac agaaagcaca gaaattcagt ttgtgtgaca accaaaataa
     5221 gaaagagaga gattctaagg gcccagagag tttggataag aaggtagata taactctttt
     5281 gcctccagaa aatgagaagg ctaaattaaa agaaactaat ctgtcatgtg aagtcacaaa
     5341 attggaatgc atttccatgt taacaacagc acttcagtct gatttctcgt gtgacagtgt
     5401 tgagggggaa agtaacgtag tggtgactgc ttacaaggat cctcaagtcc cagagttcaa
     5461 aggtaacgag gtcgaagctc ctcagaagat aacagggaag tcagaactga aggtgctgga
     5521 tgaaaggaag aaggaagata aaagcaaaat ggcagtgaaa ggctacatga gacccaccaa
     5581 gtctcgggga cctactccac atcagcccaa gtctgcaagt caggaaagag agagagccaa
     5641 gctgctcaag gccagtggag tatcccggca agaagaagga aaggctgctg ttggtctgac
     5701 tggaaatgac atcgccactc caccaaacaa ggagctacca ccaagcccag aaaagaaagc
     5761 aaagccaatt acagaaacta aggttgctga aaagcggacc tcgccatcca agccttcatc
     5821 tgcccccgcc ctcagacctg gacctaaaac caccccaacc atttctaaag ccacatctcc
     5881 ctcaactctt gtttccactg gatcaagtag tagaagtcca tctacgactc tgcctaagag
     5941 gcctaccacc accaagactg agggaaaacc tgctgatgtc aaaaggatga ctgctaagtc
     6001 tgccacagct gacttgagtc gctcaaagac cacctctgcc agttctgtga agagaaacac
     6061 cactcccact ggggcaacac ccccagcagg gatggcttcc actcgagtca agcccatgtc
     6121 tgcaccttgc cggtcttctg tggctctttc cgtggacaag aagcccacct ccactaagcc
     6181 tagctcctct gctcccaggg tgagccgttt ggccacaact gtttctgccc ctgatctgaa
     6241 gagtgtccgc tccaaggtcg gctccacaga gaacatgaag caccagccag gaggaggccg
     6301 ggttcagatt cagaacaaga aagtggacat atccaaggtc tcctccaagt gtgggtccaa
     6361 agctaatatc aaacacaagc ctggtggagg agatgtcaag atcgaaagtc agaagttgaa
     6421 tttcaaggag aaggctcaag ccaaagtggg gtcccttgat aacgttggcc acttgcctgc
     6481 aggaggaacc gtgaagactg agggcggtgg cagtgaggcc cctccgtgtc caggcccccc
     6541 cgctggggag gagccagcca tccctgaggc tgcgcctgac gctggcgccc ctacttcagc
     6601 cagtggcctc agtggccaca ccaccctgtc agggggtggt gaccaaaggg agccccagac
     6661 cttggacagc cagatccagg agacaagcat ctaatgatga cattctggtc tcgtcttcca
     6721 tctcccctgt gttccctctc ttgtctcccc ccttgttgcc ctctcccatc cctcctcacg
     6781 tgtcactgca gattgagacc tacaggctga cgttccgggc aaatgccagg gcccgcaccg
     6841 accatggggc tgacattgtc tcccggcctc cccacttccc tggtggccca agcttggggt
     6901 ctcgggccct gggctccttt tcccgggctg tctactagac ttgtaagctc ttgggtgctg
     6961 ggcagcccct ttaggcctcc ttccctcctg tctcgcttgc tcaaggcagc cgcagccctg
     7021 ctgccttcac acctccttcc accctttctg ggcccagctc caacttcact atcgcaccct
     7081 tcactgctct atggagaaag gtgggagggg gtgggagtct aatgggatct ctgtgggatc
     7141 taggggtgag gggctggatt ccagccttgg ccgtttggtt tttttggacc aaacccaaaa
     7201 gaaactgaca aaccctccct ctcttccctg gctcaccctc gagagactag taaaggtgaa
     7261 ctccgagtgg agaccagcac cgaccgaacc ccctggaacc caaactactg cctctccttg
     7321 accccatgct agaggccacc atggaggtgt caccaggccc ttttgctgcc ctgcctcaag
     7381 ttagtcaagg ttcagtcctc cttgtcccca ctgcttattg tacctgaata gctgctgtct
     7441 cacttttttc cttcttttcc ccttcccaat aacctatgaa ctggtggtgt agtttgcagg
     7501 ttgaagctat gtctaaaaga gagttctcag taggtggtga aggaagcaga ggaggagatc
     7561 ctgagtctcc actgaggagg ctgtcaggca ttggggtctg ccctactctg ggcagcttgg
     7621 atcctgtggg aagaagtgga ctattgccta gtggagttgg acagccaggt ggtcagcgtg
     7681 atggctgtgt tgtgtatatt tgctgctttt ctaacaagag gctggttttg gcatctatct
     7741 cattccctgg gaatccggtg gttaatgtgt gatacaaaac cagggctgga gaaacagaaa
     7801 tgaaggtcaa agtccctggt ctgtacctgc aggccatggc acccaaatcc tcatatctag
     7861 gggagcctga gatgtccaga atgcttgtga acagtgggga atcaggtgtg aaaatttaaa
     7921 actaaaatgc atgagactga ggccatccca cttttcttct ggtgtgactg gagaggagga
     7981 gcaggagagg ccagccgtgg aggtgcagcc atcccagtgt ggtctgctca tggatgggat
     8041 ggctgcaata ttgagaaaat cccgggaatt gtatcaacac aagattctta ttgcacttgt
     8101 attttttgta ttaaagtttg catggtttct aataaagaat tcaaacctaa gtttgtattg
     8161 aaatggcctg ggagtgtcta agggctcctc tggtagggca ttttctgctg ggcagatttg
     8221 cctctcagga ggctgaccca gacttgaccc cccccaggcc ctccttctaa cacagcctcg
     8281 cctctgcttg ggtgtgtttt tgagcaggta gaggtcttca ctatctctct gccaagggag
     8341 ggtatccctg ggcttgaagg tcctctccat ttatgaggta gcagttactt tataatcttg
     8401 acatggaatc cctagctctc taagcacaca caaagaatta ttgcggtctg tagaaaaaag
     8461 gactgccaga actatgcttg gagcctgcat tgtattttgc agcaagaagg gggcctgatg
     8521 gagctgggaa ggacgcagta gggatcaggg tagtgatggc tgagggcata aaggtacttg
     8581 ctaccctcct tgatgttaat cttggggcct tgaagatgct gatgaaattg tcaagaaaca
     8641 agtccattgg ccaaggatta gagaaaggaa ggcagcccaa gctctccagg tagctccccg
     8701 aaaggatgcc acaagccaga gaacctgaga aggctggtct agcagattgg gaccacaggc
     8761 catgtggtgt gcatacttcg aaatgtttgg gaataagatc ttttctgtac tttacagttt
     8821 gctcatggct tagccatttc ctgtgtctgt aattgttgta ctgatttaaa caataaagct
     8881 gcctgacatc ccacca
//
