LOCUS       XM_039111233            2887 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mannosidase, endo-alpha-like (Maneal),
            transcript variant X1, mRNA.
ACCESSION   XM_039111233
VERSION     XM_039111233.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111233.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2887
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2887
                     /gene="Maneal"
                     /note="mannosidase, endo-alpha-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 9 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 138
                     samples with support for all annotated introns"
                     /db_xref="GeneID:366466"
                     /db_xref="RGD:1563973"
     CDS             142..1500
                     /gene="Maneal"
                     /codon_start=1
                     /product="glycoprotein endo-alpha-1,2-mannosidase-like
                     protein isoform X1"
                     /protein_id="XP_038967161.1"
                     /db_xref="GeneID:366466"
                     /db_xref="RGD:1563973"
                     /translation="MARRRRRACIALFLVLLFAFGTLMGLRTLKAPDGLPALGPGPEL
                     APFERRPEGNPAPARAPAAPAAPPPPPPRTAAPRASLGPVEADPAPRQSQRVYSDLHA
                     FYYSWYGSPRREGHYIHWDHVMVPHWDPKISASYPRGRHSPPDDLGSSFYPELGPYSS
                     RDPDVLREHMIQLKEAAIGVLVLSWYPPGMADDNGEPTDDLVPAILDSAHQYNIQVAF
                     HIQPYKGRDDITVHDNIKYIIDTYGSHGAFYRYKNSMGKSLPLFYIYDSYLTSPEAWA
                     HLLTQNGPHSIRNTPYDGVFIALLVEESHTHDILAAGFDGMYTYFASNGFSFGSSHQN
                     WKAVKNFCDTNNLMFIPSVGPGYIDTSIRPWNNHNTRNRVNGKYYETALQAALTVRPE
                     IVSITSFNEWHEGTQIEKAVPKTTPTRLYLDYLPHQPSLYLELTRRWAEHFIKEKEQW
                     LM"
ORIGIN      
        1 cgggcccgcc cgcactgcgg ggacaggcgc ggagccgccc tgggcgcccg gcactcgctg
       61 gccgtggtct gggacgcgcg ggcgggcgga atggcgcgga tccgaggctg ttagcgcggc
      121 ggccggcacc gcgggaaagc catggcccgg cggcgacgtc gcgcctgcat cgccctcttc
      181 ctggtgctgc tcttcgcctt cggcacgctc atggggctgc gcacgctcaa ggccccggac
      241 gggctgcctg cactgggccc aggcccggaa ctagcaccgt tcgagcggcg tcccgagggg
      301 aaccctgctc ccgctcgggc cccggctgcc cccgctgcgc cgccgccgcc tccgccgcgc
      361 accgccgccc cgcgcgcctc gctgggcccg gtcgaggccg atcccgcgcc ccggcagagc
      421 cagcgtgtct actccgatct gcacgccttt tactactcgt ggtacgggag tccgcggcgc
      481 gagggccact acatccactg ggaccatgtc atggtgccgc actgggatcc caagatctcg
      541 gccagctacc cgcgtggccg ccacagccct ccagatgact tgggctccag cttctacccg
      601 gagctggggc cttacagctc gcgggacccc gacgtgctac gagagcatat gatccagctc
      661 aaagaagcag ccatcggcgt tttggttctc tcctggtatc cacctggtat ggctgatgac
      721 aacggggagc ccacagacga cctggtacct gccattctgg actctgccca tcagtacaac
      781 atccaggtgg ccttccatat ccaaccctac aagggccggg atgacatcac tgtccatgac
      841 aacatcaagt acatcattga cacgtatggc tcccatggtg cattttatcg gtataagaat
      901 agcatgggca agagcctccc actcttttat atctacgact cctatctgac atcccccgag
      961 gcctgggccc acctcctgac acaaaacggg cctcactcta tccgcaacac tccctatgat
     1021 ggggtcttca tagctctgct tgtggaggag agccacaccc acgacatcct tgctgcggga
     1081 ttcgacggaa tgtacaccta ctttgcctcc aatggcttct cctttggctc ctcccaccag
     1141 aactggaaag ctgtgaagaa tttctgtgat accaacaacc tcatgttcat ccctagtgtg
     1201 gggcctgggt acattgacac cagcatccgg ccctggaaca accataatac tcgaaacaga
     1261 gtcaacggca agtactatga gacagccctg caggcagccc tgactgtgag gcctgagata
     1321 gtctccatca cctccttcaa tgagtggcac gagggcacac aaatcgagaa agctgtcccc
     1381 aagacgacgc caactcgcct gtatctggac tacctgcctc accagcccag cctttattta
     1441 gagctgaccc gacgctgggc agagcacttc atcaaggaaa aggagcaatg gctgatgtga
     1501 ggggaccatc actatcaccc aaacaaacct caacagatca ccaagctggt tcagctgagg
     1561 atacaggcac tcactggtcc caagcagcag ctgggagctt gtgggtagac cagctagctc
     1621 acggagaaca gagcctggca cttgaactgg tggtgctggg aagcaaggca tgatgaagca
     1681 ggaggggaca aatgactgca atggcttaag gaagctccac ggccctcagc tttcagcttc
     1741 ggcaggcagt tgtatagtgg agttgtgcga gccactctgc ttggaagggt ctcagggttc
     1801 taagctagca tgcaccgtac ttcctttgga cagccaccct gccacatctt cccgaacaca
     1861 gggaacattt gacacttcta agaggacttt aaggtcctgc cagtagactc ctgtgcccgt
     1921 aatcaggagt actgagcacc cacactcatt atcaagcacc tgctgtcagg tgctggggaa
     1981 ctggagcaag gtttctttcc caaagcttat aggatcctgc ttttggttta atcgtgtagc
     2041 tagcacatcg gctgttttcg ctctttacag ctacacccag gcctgggagt tcagctattt
     2101 tctccttcaa gacaatacct ctgtgcttcg gagtctttcc cagatgaaca tttagctgta
     2161 gaggcgacta ggtcacacct tttagcggtt taggccaggg aggccacttt cagtgctact
     2221 gtgatttgta ctaaatacga aatggttttt gccggtgcac attcctcttg cagccctcat
     2281 aaatgctgac catggtcagt ttgtgacaaa tcagtgtacg gctgggctta gtcacagaag
     2341 attctaggag ctaacatgcc agagcttatt tacaaataaa ctaatgttac atgcaaggat
     2401 ccttgttcaa gtaaaacccg atgaatgttt ttagcaagat tcttgaaaag gaaatgttca
     2461 ctggaaccta ctggactggt ttacaggcta aagctgagcc gtaactctgg gaaatggatg
     2521 gagacagagg atgaggtgga atactggtca tttcaaggac aaccagccca gtcactgaca
     2581 ctaaacccca cctgacagat cagctgggct gaccacccag cttgtagctt agccaaaagg
     2641 gctggattta atcagtgata attttatccc atgcacgcac actcgcgcgc gcgcgcacac
     2701 acacacacac acacacacac acacacacac acacacacac acacacactg gatatgatat
     2761 agcaaggcaa caggcaggca tcctcagtga aacttagctt ttctgaaggc tagcctacat
     2821 caacagccat aatgcacatg tgcacatgta tatcttgacc gagaaatcct accctaagga
     2881 aatagat
//
