LOCUS       NM_001173380            1106 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus mannosidase beta like (Manbal), mRNA.
ACCESSION   NM_001173380 XM_001067976 XM_002726286 XM_002729245 XM_575279
VERSION     NM_001173380.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1106)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1106)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FM056386.1 and BC091276.1.
            
            On or before May 13, 2010 this sequence version replaced
            XM_002729245.1, XM_575279.3, XM_002726286.1, XM_001067976.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ209453.1, CF976794.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-56                FM056386.1         1-56
            57-1106             BC091276.1         1-1050
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..1106
                     /gene="Manbal"
                     /note="mannosidase beta like"
                     /db_xref="GeneID:499934"
                     /db_xref="RGD:1561447"
     exon            1..31
                     /gene="Manbal"
                     /inference="alignment:Splign:2.1.0"
     exon            32..239
                     /gene="Manbal"
                     /inference="alignment:Splign:2.1.0"
     CDS             90..347
                     /gene="Manbal"
                     /note="mannosidase, beta A, lysosomal-like; mannosidase
                     beta A like"
                     /codon_start=1
                     /product="protein MANBAL"
                     /protein_id="NP_001166851.1"
                     /db_xref="GeneID:499934"
                     /db_xref="RGD:1561447"
                     /translation="MASDLDFSPPEVPEPTFLENLLRYGLFLGAIFQLICVLAIIVPI
                     PKSQEAEAEPSEPRSAEVPKKPKAPIPSTNKRPKKETKKKR"
     exon            240..1084
                     /gene="Manbal"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttccgttgc ggcggcacgg tgttaccgga gaacttggtt ctggagagca gtggatctca
       61 agagacgcct ggcagtggtg ccttgggcca tggcctctga cctggatttc tcgcctcccg
      121 aagtgcctga gcccaccttc ctggagaact tgctgcggta tgggctcttc ctgggagcca
      181 tcttccagct catctgtgtc ctggccatca tcgtacccat tcccaagtcc caggaggcgg
      241 aggcagaacc gtctgagccc aggagtgcag aggtgcccaa gaagcccaag gctcccatcc
      301 cttccaccaa caagaggcca aagaaggaga ccaaaaagaa gcggtagact cagaggcctg
      361 aggagcccaa ggccctagcc ttggggacag ccctcctggg aaccagcatc ctgtttgctc
      421 tcaaagactg tctctctcct tggctcagag tctgagatga ttgaaactcc cttgactgca
      481 gagatctgag cagtcgctaa gccccagctg tgcagaccac cacttcctct tccttctctc
      541 ttgtggtaca caagagattc ccgagaccaa gcactgctct gagggttctg aagtcagatc
      601 aagctcacag ggcaaactat tcacattagt cctctagccc aatgcgtcac taagtgtgga
      661 attgttgcct aaggctgcag acacaccctc tcccatggct tggccacatt tgttacttct
      721 gtatgcacag aacttctcgt gagttcaggt caggatgcat ggctctgcag tgtggagcta
      781 gcccactcac tgcagcagcc aggtcctgaa gatgttgggg gttggtgggg gagggacagt
      841 cgaaggcctg ggcccagtga tgcctgcagg agaaggtact ggctgaatga ggccagattt
      901 cccgagcaca gcctttgtaa gcctttgaag taggcttgtc actttcagac caacctcttt
      961 gtaacccatt ttaacattca aagtgccttt gacttcagcc tgtcctcccc acatctctca
     1021 ttccctgacc agtaaaggaa atgatgtgga gaagtcaaag caaataaagt gtcccgcatg
     1081 ctgaaaaaaa aaaaaaaaaa aaaaaa
//
