LOCUS       NM_001108687            3767 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus mannosidase, alpha, class 1C, member 1 (Man1c1),
            mRNA.
ACCESSION   NM_001108687 XM_001067370 XM_342943
VERSION     NM_001108687.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3767)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473968.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_342943.3, XM_001067370.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3767
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..3767
                     /gene="Man1c1"
                     /note="mannosidase, alpha, class 1C, member 1"
                     /db_xref="GeneID:362625"
                     /db_xref="RGD:1309672"
     CDS             1..1878
                     /gene="Man1c1"
                     /EC_number="3.2.1.113"
                     /codon_start=1
                     /product="mannosyl-oligosaccharide 1,2-alpha-mannosidase
                     IC"
                     /protein_id="NP_001102157.1"
                     /db_xref="GeneID:362625"
                     /db_xref="RGD:1309672"
                     /translation="MLVRKVPGFVPASSWGLRLPQKFLFLLFLSGLVTLCFGALFLLP
                     HSSRLKRLFSASRTQQPGLEVMAEIAGHHSVSEQEPPPNPAPAAPAPGEDDSGRLVGV
                     LRRKGWLRRTRPTGPREEGNRVSALRPQEESVRFSFDYNSFRSRLRHPVLGTRTDESQ
                     ESQSLVRAQREKIKEMMRFSWQSYRRYAMGKNELRPLTKDGFEGSMFGGLSGATIIDS
                     LDTLYLMELKEEFQEAKAWVQDSFHLNVSGEASLFEVNIRYIGGLLSAFYLTGEEVFR
                     VKAIKLGEKLLPAFNTPTGIPKGVVNFKSGSWGWATAGSSSILAEFGSLHLEFLHLTE
                     LSGNPIFAEKVRNIRKVLREIDKPFGLYPNFLSPVSGNWVQHHVSVGGLGDSFYEYLI
                     KSWLMSAKTDMEAKTMYYEALEAIETYLVNVSPGGLTYIAEWRGGILDHKMGHLACFS
                     GGMIALGAEDAKEDKRAYYRELAAQITRTCHESYARSDTKLGPEAFWFNSGREAVATQ
                     LSESYYILRPEVVESYMYLWRQTHDPIYREWGWEVVMALEKHCRTEGGFSGIQDVYSS
                     NPNHDNRQQSFFLAETLKYLYLLFSEDDVLSLEDWVFNTEAHPLPVNRSDSSSVAGHR
                     H"
     exon            1..525
                     /gene="Man1c1"
                     /inference="alignment:Splign:2.1.0"
     exon            526..622
                     /gene="Man1c1"
                     /inference="alignment:Splign:2.1.0"
     exon            623..738
                     /gene="Man1c1"
                     /inference="alignment:Splign:2.1.0"
     exon            739..819
                     /gene="Man1c1"
                     /inference="alignment:Splign:2.1.0"
     exon            820..914
                     /gene="Man1c1"
                     /inference="alignment:Splign:2.1.0"
     exon            915..1032
                     /gene="Man1c1"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1126
                     /gene="Man1c1"
                     /inference="alignment:Splign:2.1.0"
     exon            1127..1242
                     /gene="Man1c1"
                     /inference="alignment:Splign:2.1.0"
     exon            1243..1462
                     /gene="Man1c1"
                     /inference="alignment:Splign:2.1.0"
     exon            1463..1635
                     /gene="Man1c1"
                     /inference="alignment:Splign:2.1.0"
     exon            1636..1751
                     /gene="Man1c1"
                     /inference="alignment:Splign:2.1.0"
     exon            1752..3767
                     /gene="Man1c1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgctggtga ggaaagtgcc gggcttcgtc ccggcctcgt cgtgggggct gcggttgccg
       61 cagaagttcc tttttctgct cttcctctcg ggcctcgtta ccctgtgctt cggtgccctg
      121 ttcctgctgc cccactcctc tcgcctcaag cgcctcttct cggcctcgcg gacgcagcag
      181 cccggcctgg aggtgatggc cgaaatcgcc ggccaccact cggtgtcaga gcaagagccg
      241 cctcccaacc ctgcccctgc ggctccggcc ccgggtgagg acgattccgg ccgcctggtg
      301 ggtgtcctcc gtaggaaagg gtggctgcgg cgaacccgcc ccaccgggcc ccgggaggag
      361 ggcaacaggg tttcagccct ccggccgcag gaagagagcg tccggttcag tttcgactac
      421 aatagtttcc gcagccgcct tcgacacccg gtcttgggga caaggactga tgagagtcag
      481 gagtcccaga gtctagtgag agctcagaga gagaaaatca aagagatgat gcggttttcg
      541 tggcagagtt accgccgtta tgcgatgggg aagaacgagc ttcggccact cacaaaggac
      601 ggcttcgagg gcagcatgtt tggcggtctc agtggggcga ccatcatcga ttctctcgac
      661 accctctacc tcatggagct gaaagaggag ttccaggagg ccaaggcctg ggtgcaagac
      721 agtttccacc tgaacgtgag tggagaagca tctttgtttg aagtgaacat ccggtatatc
      781 ggaggactgc tctcggcctt ctacctgaca ggagaagagg tgttccgagt gaaggccatc
      841 aagctgggtg agaaactgct gcccgccttc aacacaccca cgggcatccc caagggcgtg
      901 gtgaacttca aaagcggtag ctggggctgg gccaccgcgg gcagcagcag catcctggcg
      961 gagtttgggt ccctgcactt ggaattcttg catctcactg aactctctgg caatccaatc
     1021 tttgcagaaa aggtcagaaa tatccgcaag gtcctcaggg agattgacaa acccttcggc
     1081 ctctacccca acttcctcag cccagtgagc gggaactggg tacagcatca cgtctcagtc
     1141 gggggacttg gggacagttt ttatgaatat ttgatcaagt cctggttgat gtctgccaaa
     1201 acagatatgg aggctaaaac catgtactac gaagccttag aggccataga gacctatctg
     1261 gtgaatgtct ctccgggggg cctgacctac attgctgagt ggcgaggagg aattctggac
     1321 cacaagatgg gacaccttgc ttgcttctcg gggggcatga tcgcccttgg tgctgaggat
     1381 gccaaggaag ataaaagggc ctactaccga gagcttgcag cccagatcac caggacctgc
     1441 cacgagtcct acgcccgctc agacaccaag ctggggcctg aggccttctg gttcaactct
     1501 ggccgagagg cggtggccac acagctgagc gagagctatt acatcctgcg acctgaggtg
     1561 gtggagagct acatgtacct gtggcggcag acacacgacc ccatctacag ggagtggggc
     1621 tgggaggtgg tgatggcctt ggagaaacac tgccggacgg aaggtggctt ctcggggatc
     1681 caggacgtgt atagcagtaa ccccaaccac gacaacaggc aacagagctt cttcctggct
     1741 gagacactga aatatctcta tcttctgttc tctgaagatg atgtgctgtc gctggaagac
     1801 tgggtgttca acaccgaggc tcatccactg cccgtcaacc gctcggacag ctccagcgtg
     1861 gctgggcacc gccactgacc actgtctcca cgcccgtgtc tcagggacgc ctctactttc
     1921 ttgggatccg ggaccgttct cagaggcact ggggacggaa agcccactat gggcagaccc
     1981 tggacggatg tgtcggacag acgacttttt ttcctctgtg aggagacagg agctggtgac
     2041 gtaccagcat gggacccggg ctgtggtccc cggcgcctac gcgttccttt ctacggggga
     2101 atttctgtgc ccccacactt gctgtcactg ggccaaagga ctggaggttt gcatatccat
     2161 ctcatgtatt tgattccgtt tcctttttgg tttcaggagt tcagttttgc ttgactttac
     2221 tttttttttt cctctctacc catttgagtt ttatggtgat cataattttc aaaatcacgg
     2281 tgtcacctaa ctcaaggaga ccataagtgt ttgcgcgcac acacacacac acacacacac
     2341 acacacacac acacacacac acacacgacc catctgcttt caatgccttt cactcgttgt
     2401 agactctgtc ccactttgtg tcacctaccc catcattcga ggaaacgctt cccctttgct
     2461 ttggtcccaa atgttacaaa tcactgatgt tattttcatt actgtaatgg aaaaaaatat
     2521 atgtgaagta gaataaagga gttcattgaa taagaagtaa gatcggactc attggccacc
     2581 agtggctcct ggggaaaaaa tgtccctaca gtgtcatcag aagcagtcac cgtctgcctc
     2641 gccgccgagc ttctctgtct cccttcaatt agccccagaa atccagaaaa tgggaagcca
     2701 gccctttggg tagagttggg taggcatact ctgatggagg ctgggaagaa ttccagggag
     2761 gtgactctgt ttgcctgagg tcacacagcc agaggaagag gcaggagtaa gccttgcctc
     2821 cggaatctcc tggccaccag gtcctttgtt cctctgctgt caatcatcga tgcttgatga
     2881 gcccctcccc tcaccggggt tagatggtct ctgccctgca gtcaggtcgc taggatcata
     2941 catgatgccc gcctatgtca gtgggaaggc taccgacaag gacacaggag gctaagacaa
     3001 caatagcctg tccccggggt tagggacaat aaggactttt aagccaagag ccaaagacaa
     3061 gtagtagcta tgtacagaca gggacagaaa tagtgtgatg atgtcttcta acccagaccc
     3121 cttgtcagtc tctctgtgcc catctatgaa cccagaagcc atccgcatgc tgaggaggcc
     3181 cagtccctac cctgaactag caggctttcc tttccaacag atccacttgc agcctggaca
     3241 cagctgaagt cctgggtaat gttgactctc tcccagcccc ttcggtagac agtgcttgtc
     3301 aactggccat caagataatg ggactccggg cctgctgacc cactgtgtga gcccagacca
     3361 gtcacctcac ctcactgggc tcttttctat cagcagaagt cccacctgct aaggttgcta
     3421 tgaaaaccag caagatgctc ctgataccct gtggtccagc atccactgcc tccttgttct
     3481 ggaggctccg gcggcccagc tcttcctgaa cagagagttg cgcttgcaca gtccctgtag
     3541 caggaacccc ggccctcaga gcatcagtca cacactatga tcaggtgtca cagaacagag
     3601 tctcctgcta cccatagcac acaagtcaaa ggaaaaggga cactcgctgc acaaacactg
     3661 taggacaatt aagaaaccaa gctaatcgga aaggaaatac agttaccatc ctactctccg
     3721 gaattaatac ggttatattt tcttctagat ctttttctat gaatata
//
