LOCUS       XM_039101390            3513 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MAM domain containing 2 (Mamdc2),
            transcript variant X1, mRNA.
ACCESSION   XM_039101390
VERSION     XM_039101390.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101390.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3513
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3513
                     /gene="Mamdc2"
                     /note="MAM domain containing 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 41 ESTs, 7 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     39 samples with support for all annotated introns"
                     /db_xref="GeneID:309410"
                     /db_xref="RGD:1305129"
     CDS             491..2551
                     /gene="Mamdc2"
                     /codon_start=1
                     /product="MAM domain-containing protein 2"
                     /protein_id="XP_038957318.1"
                     /db_xref="GeneID:309410"
                     /db_xref="RGD:1305129"
                     /translation="MLLVGVLLVVQALLLANALDLPAGSCAFEEGTCGFDSVFAFLPW
                     ILNEEGHYVYVDTSFAKQGEKAVLLSSDLQAEEWNCLRLVYQITTPLGSVSEPSQLNL
                     YVRFEDESFDRLLWSTKEPSDSWLIASLDLQNSSKKFKILIEGVLGQGNTASIALFEI
                     KMTTGYCIDCDFEENHLCGFVNRWNPNVNWFVGGGTAKNTHSILPWDHTFRSEQGHYM
                     YVDSVYVKHFQEVAQLISPMTTAPMSGCLSFYYQLQQGNDNVFSLYTRDMAGLYEEIW
                     KVDSPGNAVWNLAEVEFSAPYPMEVIFEVAFNGPKGGYVALDDISFSPVHCQNQTGLP
                     FSAVGTSCDFEKDLCNFYQDKEGPGWTRVRVKANMYRTGDHTTGTGHYLLANTKFTSQ
                     PGYIGRLYGPSLPGNMQYCVRFHYAIIGFLKMSDTLAVYIFEENHVVQEKIWSVLESP
                     RGVWMQAEVSFKKPMPTKVVFMSLCKSFWDCGLVALDDITIQLGNCRSPERLPPPPGE
                     CTFDQDECAFTQEKRNRSSWHRGRGETPTSYTGPKGDHTTGVGYYMYIEASHMVYGQK
                     AHLLSQPLRGVPGKHCLIFFYHMYGAGTGLLSVYLKREEDSKESLLWRRKGEQSISWL
                     RALVEYSSRRQHQIIFEAIRGVSIRSDIAIDDVKFQAGPCEEMEDTSQQSSGYSEDLN
                     EIDY"
ORIGIN      
        1 cccccctccc cgagagattt acaagctaca ggcagggaag gctgtcccct gaaataagct
       61 gtttcccacc acggatgggc ggggcaggag cctctggtcg caacccagca gagggactgc
      121 cccttccaag tgtatgcaag aggtctggtc cccagcttta aaaatttgga cgaaggcacg
      181 gcttgctgac ctctcctctt ccccaagtgg tggctggccc ttctcaagtg tgcagttgtc
      241 tcctccctgt tcagtccggc ggtcgtccct ggcccaactg ggctacgagt ggccgggcgc
      301 tgcagccctg tgcagcgcgc tctgcacaca ggcgccttgg cttgcagctc ctcggacgaa
      361 tttgagcagc ctgtggcatc tctagcaggt ccccagctcc ttgcctagca ccctcccttc
      421 cctggagcag cgggcctcag cgagccagca gccagcagcc ctcgcgggtc ctcctgcctg
      481 aagttctact atgctgctag tgggagtcct gctagtagtg caagccttgc tgcttgccaa
      541 tgccctggac ctgcccgctg gctcctgtgc ctttgaagaa ggcacatgtg gctttgactc
      601 ggtgtttgcg tttctgcctt ggattctaaa cgaggaaggt cattatgttt atgtggacac
      661 ctcttttgcc aagcaagggg agaaggcagt gctgctgagt tctgatttgc aggctgagga
      721 gtggaactgt ttgcgcctgg tctatcagat aaccacacct ctggggtctg tgtcagagcc
      781 cagccagctg aacctgtatg tgagatttga ggatgaaagt tttgatcgtt tgctctggtc
      841 cactaaggag ccttcagaca gctggctcat agccagtctg gatcttcaaa acagctccaa
      901 gaaattcaag attttgatag aaggtgtcct gggacaagga aacacagcta gcattgccct
      961 ctttgaaatc aagatgacaa ccggctactg tattgactgt gactttgaag aaaaccatct
     1021 ctgcggcttt gtgaaccgct ggaatcccaa tgtgaactgg ttcgttggag gaggaactgc
     1081 gaagaacacc cactccatcc tcccatggga tcacaccttc aggagtgagc agggccacta
     1141 catgtacgtg gactctgttt atgtcaagca cttccaggaa gtggcccagc tcatctcccc
     1201 aatgaccaca gcccccatgt ctggctgcct ctcattctat taccagcttc agcagggcaa
     1261 tgacaatgtc ttctctcttt acactcggga catggctggc ctatacgagg agatctggaa
     1321 agtggacagc ccaggcaatg cggtctggaa ccttgcagag gtggagttca gtgctcctta
     1381 tcccatggag gttatttttg aagttgcctt caatggtccc aaaggaggct atgtcgccct
     1441 ggatgatatt tctttctctc ctgttcactg ccaaaatcag acagggcttc ctttcagtgc
     1501 tgtgggaaca agctgcgatt ttgagaaaga cctctgcaac ttttatcaag acaaagaggg
     1561 tccgggttgg accagagtaa gagtcaaagc aaacatgtat cggacaggag accacacgac
     1621 aggaacaggg cattacctgc tggccaacac gaagtttaca tcccagcctg gctacatcgg
     1681 aaggctttac ggtccctctc taccaggaaa catgcagtac tgtgtacgct tccattatgc
     1741 catcattggg tttttgaaaa tgagtgacac cctagccgtt tatatctttg aagaaaacca
     1801 cgtggttcaa gagaagatct ggtctgtgct cgagtcccca aggggtgttt ggatgcaagc
     1861 agaagtcagc tttaagaagc ccatgcccac gaaggtggtc tttatgagcc tatgcaaaag
     1921 cttttgggac tgtggactgg tagccctgga tgacattacc attcaactag gaaactgccg
     1981 gtctccagag agacttccac ctccacctgg agagtgcact tttgatcaag atgaatgtgc
     2041 gtttacacag gagaaaagga accggagcag ctggcacagg gggaggggag aaacacccac
     2101 ctcctacaca ggacccaagg gagatcacac tactggggta ggttactaca tgtatatcga
     2161 ggcctcgcac atggtatatg gacaaaaagc gcaccttttg tcccagcctc tgagaggcgt
     2221 ccctgggaaa cactgcttga tttttttcta ccacatgtac ggagcaggaa ctggcctgct
     2281 gagtgtttac ttgaaaaggg aagaagacag taaggagtcc ttgttgtgga gaagaaaagg
     2341 ggaacagagc atctcctggc tgcgggcact ggttgaatac agctctagga gacaacacca
     2401 gataattttt gaagctattc ggggagtgtc aataagaagt gatattgcca ttgatgatgt
     2461 taaatttcag gcaggaccat gtgaagaaat ggaagataca agtcaacaat cctcaggata
     2521 ttctgaagac ttaaatgaaa ttgactatta agaaattacc taacttggag taagaagaca
     2581 aaagctgtac ctctcttcag tcacagcgaa agcagaagaa aggatagtgg atagtcttaa
     2641 cgattgcata agttgaactg acttcagaag gccctctttc atttcttttg aaaactatgt
     2701 ctctgtatat tgactcaggg cttccctctg ttcccccctg cacatctgac aactgttact
     2761 agaagtacaa gctattgggt ttacagaaac catttcatct taatgttggt gccagttgaa
     2821 atacaaatgt actgtgttac cgtcacttta caggataaag ggcacagtca gaatgagtgt
     2881 gcttattagt ctgcattcag tgaatgtact gggaggcgag gtcttggtgg ttttcctttt
     2941 gagtttcaag aatgaaaagt tttcttaata atgcaaggtc agtaatgcct gcaaaatgaa
     3001 tgcagtgttg tatggtaaca agttcttctg gaaatgaggt cacatttgta tacttgtttc
     3061 gcagagagag cgacaagtct ttactatttc accagaggta agagaaaggt gttttcgtag
     3121 agccccaggg taggtctgta ctaactcatg ctgccttaca aggccgtgcc gccgtcttcc
     3181 ttcttctccc tttgaattgc cttggacagt ggccaggagc gcctgggcag aaatgcacct
     3241 tttcaacaag gcaagcttga cttttttttt cttaaaaatg tacatacacc caacaatttt
     3301 tataaatgtg ttaagcaatt tgactgactt ttatcataaa tagttttagt gaaatttttc
     3361 gtagtacgag ttccaccaca tttgctaaag tatggttttc tattgattta tttagagagt
     3421 ttatatgtgt gcaattgtgt ggctaatcag ctgtctaaaa cttcaaaatt acccaataaa
     3481 agatcatttg aaaatccttt ccttagcaat aaa
//
