LOCUS       NM_001191105             630 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus mago homolog B, exon junction complex subunit
            (Magohb), mRNA.
ACCESSION   NM_001191105 XM_001074029
VERSION     NM_001191105.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Zhan,X., Yan,C., Zhang,X., Lei,J. and Shi,Y.
  TITLE     Structure of a human catalytic step I spliceosome
  JOURNAL   Science 359 (6375), 537-545 (2018)
   PUBMED   29301961
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Zhang,X., Yan,C., Hang,J., Finci,L.I., Lei,J. and Shi,Y.
  TITLE     An Atomic Structure of the Human Spliceosome
  JOURNAL   Cell 169 (5), 918-929 (2017)
   PUBMED   28502770
REFERENCE   3  (bases 1 to 630)
  AUTHORS   Singh,K.K., Wachsmuth,L., Kulozik,A.E. and Gehring,N.H.
  TITLE     Two mammalian MAGOH genes contribute to exon junction complex
            composition and nonsense-mediated decay
  JOURNAL   RNA Biol 10 (8), 1291-1298 (2013)
   PUBMED   23917022
REFERENCE   4  (bases 1 to 630)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   5  (bases 1 to 630)
  AUTHORS   Tange,T.O., Nott,A. and Moore,M.J.
  TITLE     The ever-increasing complexities of the exon junction complex
  JOURNAL   Curr Opin Cell Biol 16 (3), 279-284 (2004)
   PUBMED   15145352
  REMARK    Review article
REFERENCE   6  (bases 1 to 630)
  AUTHORS   Monshausen,M., Gehring,N.H. and Kosik,K.S.
  TITLE     The mammalian RNA-binding protein Staufen2 links nuclear and
            cytoplasmic RNA processing pathways in neurons
  JOURNAL   Neuromolecular Med 6 (2-3), 127-144 (2004)
   PUBMED   15970630
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Jul 17, 2010 this sequence version replaced XM_001074029.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.6713.1,
                                           SRR26643286.15278.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760386,
                                           SAMN12840105 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-94                JAXUCZ010000004.1  166773247-166773340 c
            95-153              JAXUCZ010000004.1  166770213-166770271 c
            154-264             JAXUCZ010000004.1  166769215-166769325 c
            265-347             JAXUCZ010000004.1  166766796-166766878 c
            348-630             JAXUCZ010000004.1  166765618-166765900 c
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..630
                     /gene="Magohb"
                     /note="mago homolog B, exon junction complex subunit"
                     /db_xref="GeneID:690303"
                     /db_xref="RGD:1597384"
     CDS             1..447
                     /gene="Magohb"
                     /note="mago-nashi homolog B; mago homolog B, exon junction
                     complex core component"
                     /codon_start=1
                     /product="protein mago nashi homolog 2"
                     /protein_id="NP_001178034.1"
                     /db_xref="GeneID:690303"
                     /db_xref="RGD:1597384"
                     /translation="MALASDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKN
                     DVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFT
                     TSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI"
     exon            1..94
                     /gene="Magohb"
                     /inference="alignment:Splign:2.1.0"
     exon            95..153
                     /gene="Magohb"
                     /inference="alignment:Splign:2.1.0"
     exon            154..264
                     /gene="Magohb"
                     /inference="alignment:Splign:2.1.0"
     exon            265..347
                     /gene="Magohb"
                     /inference="alignment:Splign:2.1.0"
     exon            348..630
                     /gene="Magohb"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggctttgg ctagtgattt ctacctgcgg tactacgtcg ggcacaaggg caagtttggg
       61 cacgagtttc tggagttcga gtttcggccg gacgggaagc ttagatatgc caacaacagc
      121 aattataaaa atgatgtgat gatcagaaaa gaggcttatg tccacaagag tgtaatggaa
      181 gaactgaaaa ggatcattga cgacagtgaa attacaaagg aggacgacgc tctgtggccg
      241 cctcctgaca gggttggccg gcaggaactt gaaatcgtaa tcggggatga acacatttct
      301 tttaccacat caaaaatagg ttctctcatt gatgtaaatc agtcaaaaga tcccgaaggc
      361 ctccgtgtat tttactattt ggtgcaagac ctgaaatgtt tagtgttcag cctcattggt
      421 ctacacttca agattaagcc gatttgaatg ggatgttttt gaggttattt atatatttaa
      481 ttaaaagaag ggttttttat taataatttc gggattttta tgaatgtgaa acttttgtat
      541 ataaactcaa tatatgaaaa aaaacaacag gttaaatggt ttttatttct tgcctccacg
      601 tggaatggac agttcttata tataattgat
//
