LOCUS       NM_001025013            1702 bp    mRNA    linear   ROD 06-OCT-2024
DEFINITION  Rattus norvegicus MAGE family member B16 (Mageb16), mRNA.
ACCESSION   NM_001025013
VERSION     NM_001025013.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1702)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079208.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079208.1, CV126300.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq21"
     gene            1..1702
                     /gene="Mageb16"
                     /gene_synonym="Snca"
                     /note="MAGE family member B16"
                     /db_xref="GeneID:317274"
                     /db_xref="RGD:1562365"
     exon            1..65
                     /gene="Mageb16"
                     /gene_synonym="Snca"
                     /inference="alignment:Splign:2.1.0"
     exon            66..143
                     /gene="Mageb16"
                     /gene_synonym="Snca"
                     /inference="alignment:Splign:2.1.0"
     exon            144..1676
                     /gene="Mageb16"
                     /gene_synonym="Snca"
                     /inference="alignment:Splign:2.1.0"
     CDS             149..1231
                     /gene="Mageb16"
                     /gene_synonym="Snca"
                     /note="MAGE-B16 antigen; melanoma antigen family B, 16"
                     /codon_start=1
                     /product="melanoma-associated antigen B16"
                     /protein_id="NP_001020184.1"
                     /db_xref="GeneID:317274"
                     /db_xref="RGD:1562365"
                     /translation="MSQKNPEYAADHDHTREEMQNLQVAPASSDVEEPCSSSHLMASS
                     LKGHTSEETQVPEDMEEPCSSSQLLTASNQEDPAYETPSTSRGLQHPYVSSSESAKGL
                     GNKEMQGNSVIPPDQPDLPVMTIDGKVNFLVNYMLYKYQVKEMMSMNDIMTLIVREDE
                     HHFHEILMRASERMEMVFGLEVREVDPVNHFYALFIKLGLTYDGMRADEYSFPKTGLL
                     ILILGVVFMKGNRATEEEIWEVLNPMGIYAGMNHFIFGDPRELLTDDFVREQYLAYQP
                     IANSDPIQYEYVWGPRAKAETSKMKVLEFVAKVHGSDPTVFPSQYEEALIEEEERTLA
                     MILEQAGPSSASGESSSDMGSNVPHI"
ORIGIN      
        1 gtttgctgaa ttaaattcct cgaagttggc agagaaagat aatttccttt tcagtcatca
       61 aacagtgagc tgttgccttt gattggaagc actagaacca gacaattaaa agggaagaca
      121 ccaaggtgct ttccaaattt aagtcaccat gtctcagaag aatccagaat atgcagctga
      181 ccacgaccat acccgtgaag agatgcagaa cctacaggtt gcaccagcct ccagcgatgt
      241 tgaggagcca tgttcctcat ctcatcttat ggctagtagt ctgaagggcc ataccagtga
      301 agagacccag gtccctgagg atatggaaga accatgttcc tcctctcaac ttcttactgc
      361 tagcaaccag gaagatcctg catatgagac acccagtact tctaggggtc ttcagcatcc
      421 ctatgtctct tcaagtgagt ctgccaaggg tcttggtaac aaagaaatgc agggtaactc
      481 agtcattcca ccagatcagc cagatttacc tgtgatgacc atagatggga aagttaattt
      541 cttggtgaat tatatgctgt acaaatatca ggtgaaagag atgatgagca tgaacgatat
      601 aatgacactc attgtcagag aagatgaaca tcattttcat gaaatcctca tgagagcttc
      661 tgagcgcatg gaaatggtct ttgggcttga agtgagggaa gtagatcctg tcaaccattt
      721 ctatgctctc tttatcaaat taggtctcac ctatgatggg atgagagctg atgagtatag
      781 ctttcctaag actggtctcc tgatactcat cctgggtgta gtcttcatga agggcaaccg
      841 tgcaactgaa gaggagattt gggaagtgtt aaatccaatg ggaatctatg ctggaatgaa
      901 tcatttcatc tttggggacc ccagagagct gctaactgat gactttgtga gggagcaata
      961 cctggcatac cagccaatag ccaatagtga tcccatacag tatgaatatg tgtgggggcc
     1021 acgggctaaa gctgaaacta gtaagatgaa agtgttagag tttgtggcca aggttcatgg
     1081 gtcagaccct actgtgttcc cttctcagta tgaagaggct ctgatagaag aagaagagag
     1141 aacccttgcc atgattttag aacaagctgg cccgagttct gcttctggtg aaagttctag
     1201 tgacatgggc agcaatgtcc ctcacatcta gtacaataag agatagatta cttctgtata
     1261 gtttgcacag aatttttaga gttaaagtag atatttagag aagggagagt cttatctgca
     1321 tagttctaat ttgtataagt accatgctat ttttctttca ttgtttaccc tttatatttg
     1381 aatgtaattg cacttaaaag cattgttgtt tagtctcaaa atctccactt aattccattc
     1441 ataaattaat aataagagct ttgtcatgac ataaaactaa ttgggaaatg ataccatcta
     1501 tctgcgcatt atctagagta gtaaaatatg tattttctaa gattctaaat tttaaacaac
     1561 tttgttctaa ttatgttctt tgtacctttc cgtttttagt aaaatttcat gctttatgtg
     1621 gagttgttta ctttatagtt gccaaggcta ataaaattca agaaacttta cctcaaaaaa
     1681 aaaaaaaaaa aaaaaaaaaa aa
//
