LOCUS       NM_001024905            1107 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 18 open reading frame
            21 (C18h18orf21), mRNA.
ACCESSION   NM_001024905 XM_574111
VERSION     NM_001024905.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1107)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097984.1.
            
            On Jun 17, 2005 this sequence version replaced XM_574111.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097984.1, CV108267.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p12"
     gene            1..1107
                     /gene="C18h18orf21"
                     /note="similar to human chromosome 18 open reading frame
                     21"
                     /db_xref="GeneID:498830"
                     /db_xref="RGD:1564673"
     exon            1..152
                     /gene="C18h18orf21"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..732
                     /gene="C18h18orf21"
                     /codon_start=1
                     /product="UPF0711 protein C18orf21 homolog"
                     /protein_id="NP_001020076.1"
                     /db_xref="GeneID:498830"
                     /db_xref="RGD:1564673"
                     /translation="MRQKYYIEAAARGLVGSCPGQARYLLWAYSSTHEDNSTFQETCP
                     HCFQLLVLDNSRVRLKPKAKLTPKIQKLLNREARNYTLSFKETKLLRKYRDSASVLLI
                     TCRTCNRTVRHHGKSRSFLSALRSSRAASAASKASPKTPKRAAAGSTNISQSVHGSKG
                     RSPSSTVRTPTSGQSTPICSSRNGSKRKKHFSQLKALLSQSASDKNPTLDFRHFLSSL
                     "
     exon            153..175
                     /gene="C18h18orf21"
                     /inference="alignment:Splign:2.1.0"
     exon            176..375
                     /gene="C18h18orf21"
                     /inference="alignment:Splign:2.1.0"
     exon            376..578
                     /gene="C18h18orf21"
                     /inference="alignment:Splign:2.1.0"
     exon            579..1080
                     /gene="C18h18orf21"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggatggttac actgagaaag ccgacttccg gcgtggcgtt caatcgcagc gtttgggcga
       61 ctgtgctctg gagcaatgcg gcagaagtat tatattgaag cggctgctcg gggtctggtg
      121 ggaagctgcc ctggccaggc ccgctacctc ctgtgggcct acagttcgac acacgaggat
      181 aacagcactt ttcaggaaac atgtccacac tgcttccaat tgttggttct ggataattct
      241 agagtgcgcc tcaaacccaa agccaaattg acaccaaaga tacagaaact tcttaatcga
      301 gaagcaagaa attatacact cagttttaaa gaaacaaagc tgttgagaaa gtacagagac
      361 tccgcaagtg tgctgctgat tacctgcaga acatgcaaca gaacggtgag acaccacggt
      421 aagagtagaa gcttcctgtc ggcactgagg agcagccgtg ctgccagtgc tgcaagcaaa
      481 gccagcccca agacgccaaa gagagcggct gcaggctcta caaacatcag tcagagtgtg
      541 catggctcca aaggcaggag cccctcctcg accgtcagaa cacctacatc tggacagtca
      601 acacccattt gctcctcaag gaatgggagc aaaagaaaga aacacttctc tcaactaaaa
      661 gcactgctaa gtcagagtgc atctgacaag aacccaacgc tagacttcag gcacttctta
      721 tcttctctgt gaagagaatg gcctctgaaa gaaggaactg tctagtgcag cttctgaaat
      781 ggaagttaac agcttttgtc ctctgtgaga agcaagctgt tctcgccatc cttcggtgct
      841 taggggaaac acctcattaa attgagcaac ttgtgcctcc ctgggtgaat gcgaagatca
      901 aaaagtaaat gagcacaggt ggaggtgctg ctgctgctgc caggcctaca gcctgtattt
      961 catctccagg accggaccaa tggagcagaa agaatcctgt tctacaggtt gtgctctgag
     1021 ctccacacga gtgcccctca cagaagatga ataaatgtaa taaagggttt tataaactaa
     1081 aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
